Wall clock time and date at job start Tue Mar 31 2020 10:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 H 1.08999 * 109.46747 * 183.60929 * 3 2 1 5 5 C 1.50695 * 109.47220 * 303.60375 * 3 2 1 6 6 H 1.08008 * 119.99905 * 114.48584 * 5 3 2 7 7 C 1.37882 * 120.00394 * 294.49414 * 5 3 2 8 8 N 1.31506 * 119.99663 * 348.49860 * 7 5 3 9 9 Si 1.86797 * 119.99977 * 168.50070 * 7 5 3 10 10 H 1.48497 * 109.47168 * 89.99936 * 9 7 5 11 11 H 1.48508 * 109.46935 * 209.99725 * 9 7 5 12 12 H 1.48495 * 109.47259 * 329.99525 * 9 7 5 13 13 N 1.46894 * 109.47252 * 63.60781 * 3 2 1 14 14 C 1.46910 * 111.00012 * 84.29537 * 13 3 2 15 15 H 1.09004 * 109.46828 * 323.45098 * 14 13 3 16 16 C 1.52999 * 109.46971 * 83.44731 * 14 13 3 17 17 C 1.50699 * 109.47108 * 203.45238 * 14 13 3 18 18 C 1.38243 * 119.98649 * 319.72141 * 17 14 13 19 19 C 1.38223 * 120.00525 * 179.76851 * 18 17 14 20 20 C 1.38318 * 119.99253 * 0.51022 * 19 18 17 21 21 Br 1.89100 * 120.01303 * 179.72684 * 20 19 18 22 22 C 1.38327 * 119.97976 * 359.74196 * 20 19 18 23 23 C 1.38224 * 119.98999 * 0.02562 * 22 20 19 24 24 H 1.09003 * 109.47122 * 301.54834 * 1 2 3 25 25 H 1.09004 * 109.46899 * 61.54839 * 1 2 3 26 26 H 1.09002 * 109.47476 * 181.54772 * 1 2 3 27 27 H 1.09002 * 109.46892 * 239.99922 * 2 1 3 28 28 H 1.09004 * 109.47150 * 119.99759 * 2 1 3 29 29 H 0.97001 * 120.00604 * 357.18994 * 8 7 5 30 30 H 1.00891 * 111.00409 * 320.34146 * 13 3 2 31 31 H 1.09003 * 109.46644 * 179.97438 * 16 14 13 32 32 H 1.08994 * 109.47650 * 299.99825 * 16 14 13 33 33 H 1.09004 * 109.47044 * 60.00500 * 16 14 13 34 34 H 1.07997 * 119.99694 * 0.02562 * 18 17 14 35 35 H 1.08004 * 120.00104 * 180.27377 * 19 18 17 36 36 H 1.08003 * 120.00850 * 179.97438 * 22 20 19 37 37 H 1.07994 * 119.99704 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4431 -0.0647 5 6 1.4661 2.1782 -1.1833 6 1 0.7812 2.9990 -1.0286 7 6 1.8150 1.8036 -2.4636 8 7 2.8102 0.9655 -2.6551 9 14 0.8743 2.4865 -3.9257 10 1 1.5176 3.7437 -4.3848 11 1 0.8857 1.4930 -5.0295 12 1 -0.5282 2.7656 -3.5255 13 7 1.6228 2.1094 1.2406 14 6 2.5639 1.8265 2.3326 15 1 2.9231 0.8009 2.2461 16 6 3.7488 2.7906 2.2472 17 6 1.8658 2.0043 3.6562 18 6 0.9863 3.0553 3.8377 19 6 0.3421 3.2161 5.0500 20 6 0.5855 2.3314 6.0850 21 35 -0.2896 2.5553 7.7463 22 6 1.4696 1.2829 5.9046 23 6 2.1098 1.1201 4.6904 24 1 -0.3633 0.5377 0.8758 25 1 -0.3633 0.4896 -0.9036 26 1 -0.3634 -1.0273 0.0278 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3248 0.6426 -1.8990 30 1 0.6832 1.8443 1.4953 31 1 4.4469 2.5810 3.0577 32 1 4.2538 2.6619 1.2899 33 1 3.3897 3.8162 2.3336 34 1 0.7993 3.7485 3.0308 35 1 -0.3484 4.0346 5.1903 36 1 1.6604 0.5921 6.7126 37 1 2.7997 0.3014 4.5493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049525846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:12 Heat of formation + Delta-G solvation = 12.328901 kcal Electronic energy + Delta-G solvation = -18096.334377 eV Core-core repulsion = 15305.023178 eV Total energy + Delta-G solvation = -2791.311199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.59753 -37.02915 -34.13772 -31.93119 -31.13796 -31.06109 -29.11669 -28.05660 -25.63968 -23.63135 -23.10812 -22.56474 -20.45223 -19.22241 -17.18380 -16.37939 -15.68125 -15.27547 -14.50504 -14.01968 -13.87876 -13.65916 -13.47736 -13.16093 -13.06414 -12.78908 -12.15923 -12.02947 -11.70222 -11.41335 -11.22848 -10.99314 -10.78638 -10.74486 -10.63593 -10.39814 -10.25685 -10.10435 -10.04236 -9.83108 -9.03689 -8.75791 -8.55101 -8.19843 -7.40595 -6.32623 -3.98815 1.06764 1.29970 1.53420 3.45096 3.48008 3.61110 3.63713 4.52202 4.69948 4.84678 4.88223 5.04849 5.37109 5.38339 5.41883 5.59274 5.74137 5.82617 5.96559 6.04879 6.09034 6.12303 6.16597 6.22058 6.27701 6.37703 6.58721 6.65227 6.68615 6.82870 6.97135 7.03115 7.22475 7.25285 7.89622 8.24586 8.40904 8.64596 8.91651 9.67897 11.04183 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.031299 B = 0.003087 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.371681 B = 9067.032849 C = 9245.409402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.149 4.149 3 C 0.205 3.795 4 H 0.028 0.972 5 C -0.572 4.572 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.064 2.936 10 H -0.290 1.290 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.669 5.669 14 C 0.116 3.884 15 H 0.044 0.956 16 C -0.130 4.130 17 C -0.058 4.058 18 C -0.093 4.093 19 C -0.093 4.093 20 C -0.097 4.097 21 Br -0.065 7.065 22 C -0.094 4.094 23 C -0.113 4.113 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.019 0.981 29 H 0.268 0.732 30 H 0.330 0.670 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 1.597 19.931 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.189 4.189 3 C 0.096 3.904 4 H 0.046 0.954 5 C -0.611 4.611 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.550 5.550 9 Si 0.893 3.107 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.215 1.215 13 N -0.301 5.301 14 C 0.005 3.995 15 H 0.062 0.938 16 C -0.188 4.188 17 C -0.059 4.059 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.177 4.177 21 Br 0.020 6.980 22 C -0.114 4.114 23 C -0.133 4.133 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.077 2.224 18.724 19.291 hybrid contribution 0.111 -1.031 1.565 1.877 sum -3.965 1.193 20.289 20.707 Atomic orbital electron populations 1.21561 0.96786 0.98522 1.01799 1.22199 0.96103 1.01347 0.99279 1.19350 0.95472 0.88268 0.87282 0.95435 1.21789 1.30005 1.18400 0.90866 0.92643 1.25673 0.96604 0.95878 1.00205 1.70776 1.17490 1.31786 1.34945 0.83625 0.75538 0.75960 0.75598 1.21663 1.21176 1.21465 1.60967 1.03922 1.62617 1.02545 1.20506 0.93851 0.97709 0.87388 0.93841 1.21745 0.96224 0.99589 1.01251 1.20366 0.95597 0.94042 0.95857 1.21210 0.95380 0.97910 0.96714 1.21142 0.99563 0.98327 0.92260 1.21715 1.02517 1.00883 0.92542 1.96665 1.78182 1.97511 1.25597 1.21009 0.95808 0.96625 0.97928 1.21094 1.00097 0.99615 0.92447 0.94665 0.91177 0.95426 0.91610 0.96235 0.92127 0.85032 0.93590 0.91847 0.92149 0.83890 0.85208 0.85383 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.40 37.16 0.35 -2.27 16 2 C -0.15 -3.29 5.49 -26.73 -0.15 -3.44 16 3 C 0.20 4.77 1.77 -68.87 -0.12 4.65 16 4 H 0.03 0.71 6.20 -51.93 -0.32 0.39 16 5 C -0.57 -15.10 7.35 -34.44 -0.25 -15.35 16 6 H 0.06 1.51 7.84 -52.48 -0.41 1.10 16 7 C 0.02 0.55 5.20 -17.82 -0.09 0.46 16 8 N -0.91 -26.35 12.97 55.43 0.72 -25.63 16 9 Si 1.06 24.63 29.92 -169.99 -5.09 19.54 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.67 -13.16 5.41 -102.17 -0.55 -13.71 16 14 C 0.12 1.93 2.63 -68.86 -0.18 1.75 16 15 H 0.04 0.76 6.91 -51.93 -0.36 0.40 16 16 C -0.13 -2.10 9.36 37.16 0.35 -1.75 16 17 C -0.06 -0.83 4.71 -104.62 -0.49 -1.32 16 18 C -0.09 -1.28 9.04 -39.59 -0.36 -1.64 16 19 C -0.09 -1.15 9.79 -39.56 -0.39 -1.54 16 20 C -0.10 -1.18 6.22 -39.52 -0.25 -1.43 16 21 Br -0.06 -0.69 33.70 -68.01 -2.29 -2.98 16 22 C -0.09 -1.11 9.79 -39.55 -0.39 -1.50 16 23 C -0.11 -1.44 9.67 -39.59 -0.38 -1.82 16 24 H 0.03 0.65 6.32 -51.93 -0.33 0.33 16 25 H 0.07 1.56 7.17 -51.93 -0.37 1.18 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.61 6.71 -51.93 -0.35 1.27 16 28 H 0.02 0.39 7.31 -51.93 -0.38 0.01 16 29 H 0.27 7.69 6.33 -40.82 -0.26 7.43 16 30 H 0.33 6.35 5.79 -39.30 -0.23 6.12 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.14 7.30 -51.93 -0.38 0.76 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.14 2.03 7.72 -52.49 -0.41 1.63 16 35 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 37 H 0.13 1.44 8.04 -52.49 -0.42 1.02 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -27.44 317.94 -9.90 -37.34 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.12 Total: 5.86 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -2.35 Total: -25.21 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.17 Total: -39.34 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.54 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.44 -9.90 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049525846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.667 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds