Wall clock time and date at job start Tue Mar 31 2020 10:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46879 * 2 1 4 4 H 1.09000 * 109.47236 * 305.17915 * 3 2 1 5 5 C 1.50691 * 109.47069 * 185.17537 * 3 2 1 6 6 H 1.08001 * 120.00323 * 240.00380 * 5 3 2 7 7 C 1.37885 * 120.00019 * 60.00631 * 5 3 2 8 8 N 1.31513 * 119.99568 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00115 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47156 * 89.99748 * 9 7 5 11 11 H 1.48501 * 109.46880 * 209.99606 * 9 7 5 12 12 H 1.48500 * 109.46980 * 329.99514 * 9 7 5 13 13 N 1.46898 * 109.46858 * 65.17799 * 3 2 1 14 14 C 1.46897 * 111.00163 * 205.75322 * 13 3 2 15 15 H 1.09002 * 109.47057 * 325.62003 * 14 13 3 16 16 C 1.53006 * 109.46906 * 85.61452 * 14 13 3 17 17 C 1.50702 * 109.47585 * 205.61570 * 14 13 3 18 18 C 1.38236 * 119.99185 * 139.99738 * 17 14 13 19 19 C 1.38217 * 120.01134 * 179.97438 * 18 17 14 20 20 C 1.38327 * 119.98879 * 0.02562 * 19 18 17 21 21 Br 1.89099 * 120.00921 * 180.02562 * 20 19 18 22 22 C 1.38326 * 119.97928 * 359.97438 * 20 19 18 23 23 C 1.38222 * 119.99131 * 359.97438 * 22 20 19 24 24 H 1.08999 * 109.47618 * 64.61764 * 1 2 3 25 25 H 1.08996 * 109.46704 * 184.61958 * 1 2 3 26 26 H 1.08995 * 109.46822 * 304.61415 * 1 2 3 27 27 H 1.09005 * 109.46735 * 240.00694 * 2 1 3 28 28 H 1.08995 * 109.47383 * 120.00477 * 2 1 3 29 29 H 0.97006 * 119.99992 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99979 * 81.79665 * 13 3 2 31 31 H 1.09000 * 109.46732 * 174.96692 * 16 14 13 32 32 H 1.08999 * 109.47175 * 294.96560 * 16 14 13 33 33 H 1.08994 * 109.47000 * 54.96804 * 16 14 13 34 34 H 1.08001 * 119.99581 * 0.02562 * 18 17 14 35 35 H 1.07996 * 120.00813 * 179.74886 * 19 18 17 36 36 H 1.07996 * 120.00534 * 180.02562 * 22 20 19 37 37 H 1.07997 * 119.99252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6029 1.9825 -0.8400 5 6 3.5415 1.4445 -0.1282 6 1 4.1490 1.8883 0.6467 7 6 4.1397 0.8799 -1.2347 8 7 3.3999 0.3391 -2.1780 9 14 6.0010 0.8817 -1.3933 10 1 6.5516 -0.3510 -0.7749 11 1 6.3753 0.9246 -2.8297 12 1 6.5555 2.0729 -0.7014 13 7 1.6550 2.0980 1.2570 14 6 1.5582 3.5535 1.0838 15 1 2.3107 3.8850 0.3682 16 6 0.1654 3.9135 0.5627 17 6 1.7904 4.2337 2.4084 18 6 2.5371 5.3955 2.4670 19 6 2.7498 6.0200 3.6816 20 6 2.2158 5.4819 4.8386 21 35 2.5058 6.3362 6.5005 22 6 1.4686 4.3193 4.7794 23 6 1.2555 3.6961 3.5642 24 1 -0.3634 0.4405 -0.9284 25 1 -0.3632 -1.0243 0.0828 26 1 -0.3633 0.5837 0.8457 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8207 -0.0585 -2.9564 30 1 2.2981 1.8640 1.9985 31 1 0.0630 4.9978 0.5189 32 1 0.0314 3.4953 -0.4349 33 1 -0.5903 3.5039 1.2329 34 1 2.9537 5.8158 1.5636 35 1 3.3367 6.9254 3.7279 36 1 1.0510 3.8991 5.6824 37 1 0.6718 2.7886 3.5179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049525847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:13 Heat of formation + Delta-G solvation = 10.899094 kcal Electronic energy + Delta-G solvation = -18041.460885 eV Core-core repulsion = 15250.087685 eV Total energy + Delta-G solvation = -2791.373200 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43488 -36.55801 -33.82102 -31.87151 -31.17877 -30.94895 -29.24848 -28.10028 -25.99197 -23.27031 -22.81940 -22.20972 -19.95915 -19.39293 -16.90782 -16.33177 -15.50317 -15.08926 -14.72015 -14.08368 -13.69586 -13.68491 -13.31969 -13.08495 -12.77376 -12.22689 -12.17339 -11.64715 -11.50087 -11.30011 -11.23741 -11.12091 -10.78038 -10.72193 -10.61476 -10.39082 -10.30977 -10.12971 -9.61988 -9.53469 -9.08706 -8.91567 -8.43092 -8.40085 -7.35486 -6.03321 -4.16204 1.20024 1.42334 1.63225 3.24556 3.32096 3.34631 3.74352 4.36636 4.83919 4.96772 5.01595 5.19154 5.26256 5.52086 5.55331 5.74035 5.96162 5.97100 6.08923 6.21138 6.29000 6.37254 6.38233 6.50068 6.52219 6.65068 6.71923 6.83527 6.95860 7.09669 7.15498 7.41632 7.56120 7.74708 8.04922 8.10260 8.28432 8.60149 8.96094 9.51799 10.96834 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019776 B = 0.003577 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.542923 B = 7824.849880 C = 8647.159987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.121 3.879 15 H 0.059 0.941 16 C -0.130 4.130 17 C -0.053 4.053 18 C -0.111 4.111 19 C -0.094 4.094 20 C -0.099 4.099 21 Br -0.068 7.068 22 C -0.095 4.095 23 C -0.096 4.096 24 H 0.035 0.965 25 H 0.024 0.976 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 11.003 13.627 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.311 5.311 14 C 0.011 3.989 15 H 0.077 0.923 16 C -0.188 4.188 17 C -0.054 4.054 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.178 4.178 21 Br 0.017 6.983 22 C -0.115 4.115 23 C -0.115 4.115 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.879 11.119 13.955 18.498 hybrid contribution 2.088 0.010 -0.589 2.170 sum -2.790 11.130 13.366 17.616 Atomic orbital electron populations 1.21716 0.99007 0.98478 1.00351 1.21491 0.92095 0.99187 1.01659 1.19180 0.92780 0.91261 0.86014 0.94771 1.21860 0.92747 1.38422 1.05496 0.92922 1.24914 0.97833 0.94954 0.95686 1.69874 1.34784 1.38152 1.09407 0.86679 0.86161 0.78438 0.77221 1.20631 1.21193 1.20095 1.61077 1.54992 1.04582 1.10446 1.20406 0.97299 0.90089 0.91132 0.92338 1.21754 0.96203 0.99289 1.01512 1.20442 0.94398 0.94252 0.96322 1.21134 0.98806 0.95677 0.97410 1.21011 0.99233 0.99921 0.91219 1.21682 1.05847 0.99143 0.91132 1.96648 1.96151 1.79494 1.26007 1.21105 0.97703 0.93861 0.98796 1.21160 0.99344 1.00123 0.90855 0.94579 0.95716 0.93107 0.89184 0.95163 0.92866 0.85323 0.93654 0.92185 0.92464 0.85266 0.85499 0.85417 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.86 37.16 0.37 -2.36 16 2 C -0.11 -2.44 5.45 -26.73 -0.15 -2.58 16 3 C 0.22 5.04 1.78 -68.87 -0.12 4.91 16 4 H 0.03 0.89 7.20 -51.93 -0.37 0.51 16 5 C -0.55 -14.20 8.30 -34.44 -0.29 -14.49 16 6 H 0.05 1.38 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.73 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -13.15 4.83 -102.17 -0.49 -13.65 16 14 C 0.12 2.09 2.62 -68.86 -0.18 1.91 16 15 H 0.06 1.15 7.52 -51.93 -0.39 0.76 16 16 C -0.13 -2.03 9.36 37.16 0.35 -1.68 16 17 C -0.05 -0.80 4.71 -104.62 -0.49 -1.30 16 18 C -0.11 -1.54 9.67 -39.59 -0.38 -1.93 16 19 C -0.09 -1.20 9.79 -39.56 -0.39 -1.59 16 20 C -0.10 -1.27 6.22 -39.52 -0.25 -1.51 16 21 Br -0.07 -0.77 33.70 -68.01 -2.29 -3.06 16 22 C -0.09 -1.21 9.79 -39.55 -0.39 -1.60 16 23 C -0.10 -1.33 8.99 -39.59 -0.36 -1.69 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.95 7.64 -51.93 -0.40 0.56 16 27 H 0.09 2.34 5.95 -51.93 -0.31 2.03 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.33 6.50 7.64 -39.29 -0.30 6.20 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.02 7.55 -51.93 -0.39 0.63 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.13 1.67 8.04 -52.49 -0.42 1.24 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.14 1.92 7.72 -52.49 -0.41 1.52 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -26.15 324.63 -10.14 -36.29 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.49 Total: 5.65 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.37 Total: -22.17 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.13 Total: -37.38 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.15 -10.14 -36.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049525847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.192 kcal (2) G-P(sol) polarization free energy of solvation -26.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds