Wall clock time and date at job start Tue Mar 31 2020 10:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47160 * 2 1 4 4 H 1.08999 * 109.47138 * 175.23220 * 3 2 1 5 5 C 1.50701 * 109.46938 * 55.23010 * 3 2 1 6 6 H 1.08003 * 119.99939 * 245.76741 * 5 3 2 7 7 C 1.37870 * 120.00308 * 65.77378 * 5 3 2 8 8 N 1.31519 * 119.99756 * 5.53743 * 7 5 3 9 9 Si 1.86800 * 120.00268 * 185.54441 * 7 5 3 10 10 H 1.48502 * 109.46819 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47007 * 299.99302 * 9 7 5 12 12 H 1.48496 * 109.47250 * 59.99871 * 9 7 5 13 13 N 1.46903 * 109.46567 * 295.23386 * 3 2 1 14 14 C 1.46897 * 110.99946 * 279.73488 * 13 3 2 15 15 H 1.08997 * 109.47286 * 39.70072 * 14 13 3 16 16 C 1.53006 * 109.47298 * 279.70601 * 14 13 3 17 17 C 1.50701 * 109.47464 * 159.70455 * 14 13 3 18 18 C 1.38236 * 119.98774 * 39.71944 * 17 14 13 19 19 C 1.38226 * 120.01025 * 179.77169 * 18 17 14 20 20 C 1.38318 * 119.98564 * 0.50965 * 19 18 17 21 21 Br 1.89098 * 120.01004 * 179.76646 * 20 19 18 22 22 C 1.38328 * 119.98470 * 359.74796 * 20 19 18 23 23 C 1.38223 * 119.98719 * 359.97438 * 22 20 19 24 24 H 1.09008 * 109.46904 * 184.94895 * 1 2 3 25 25 H 1.08997 * 109.47308 * 304.94602 * 1 2 3 26 26 H 1.08997 * 109.47444 * 64.95152 * 1 2 3 27 27 H 1.08998 * 109.47696 * 239.99572 * 2 1 3 28 28 H 1.08998 * 109.46968 * 119.99600 * 2 1 3 29 29 H 0.97003 * 120.00091 * 355.17018 * 8 7 5 30 30 H 1.00907 * 110.99695 * 155.78674 * 13 3 2 31 31 H 1.09003 * 109.46971 * 299.99894 * 16 14 13 32 32 H 1.09000 * 109.47194 * 59.99342 * 16 14 13 33 33 H 1.08996 * 109.47037 * 179.97438 * 16 14 13 34 34 H 1.08002 * 119.99589 * 0.03166 * 18 17 14 35 35 H 1.07998 * 120.00320 * 180.23297 * 19 18 17 36 36 H 1.07993 * 120.01044 * 179.97438 * 22 20 19 37 37 H 1.07995 * 119.99321 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0854 5 6 1.4435 2.1862 1.1671 6 1 0.7586 3.0031 0.9939 7 6 1.7721 1.8238 2.4561 8 7 2.6874 0.9033 2.6673 9 14 0.9172 2.6400 3.9026 10 1 1.4455 2.0776 5.1714 11 1 1.1701 4.1029 3.8659 12 1 -0.5439 2.3880 3.8206 13 7 1.6465 2.1009 -1.2529 14 6 2.5543 1.7341 -2.3480 15 1 2.8086 0.6770 -2.2705 16 6 3.8301 2.5735 -2.2557 17 6 1.8775 1.9924 -3.6695 18 6 1.0987 3.1221 -3.8377 19 6 0.4816 3.3619 -5.0511 20 6 0.6349 2.4659 -6.0937 21 35 -0.2144 2.7900 -7.7518 22 6 1.4100 1.3329 -5.9232 23 6 2.0313 1.0969 -4.7113 24 1 -0.3633 -1.0239 0.0887 25 1 -0.3634 0.5886 0.8423 26 1 -0.3634 0.4351 -0.9310 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0809 0.4296 1.9178 30 1 1.6052 3.1025 -1.1375 31 1 3.5759 3.6307 -2.3332 32 1 4.3197 2.3867 -1.2999 33 1 4.5039 2.3010 -3.0680 34 1 0.9758 3.8195 -3.0223 35 1 -0.1237 4.2464 -5.1836 36 1 1.5296 0.6329 -6.7368 37 1 2.6368 0.2126 -4.5782 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049525849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:16 Heat of formation + Delta-G solvation = 10.991930 kcal Electronic energy + Delta-G solvation = -18088.462828 eV Core-core repulsion = 15297.093654 eV Total energy + Delta-G solvation = -2791.369174 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51100 -36.96852 -34.17915 -31.90691 -31.04272 -30.95505 -29.26803 -27.99348 -25.40669 -23.64080 -23.21084 -22.52802 -20.49439 -19.02225 -17.38377 -16.39933 -15.42693 -15.15004 -14.33769 -14.24371 -13.80660 -13.61806 -13.42901 -13.24852 -12.96819 -12.71748 -12.21475 -12.11517 -11.73521 -11.45519 -11.17682 -10.87881 -10.78570 -10.70806 -10.65187 -10.34903 -10.17607 -10.12075 -9.89337 -9.76199 -8.96714 -8.59351 -8.45984 -8.35430 -7.44398 -6.37289 -4.09717 1.16618 1.37392 1.59579 3.40979 3.43639 3.61323 3.68925 4.47849 4.74652 4.88996 4.92143 5.17978 5.35249 5.38857 5.46309 5.53691 5.59348 5.78046 5.92013 5.99118 6.15157 6.22335 6.24601 6.32637 6.38470 6.44012 6.58902 6.73173 6.88568 6.94062 7.04047 7.23146 7.40638 7.54334 7.82038 8.04777 8.45006 8.53212 8.84152 9.60939 10.99245 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.030778 B = 0.003084 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.518458 B = 9076.809992 C = 9254.679134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.205 3.795 4 H -0.005 1.005 5 C -0.591 4.591 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.669 5.669 14 C 0.113 3.887 15 H 0.083 0.917 16 C -0.174 4.174 17 C -0.034 4.034 18 C -0.093 4.093 19 C -0.092 4.092 20 C -0.100 4.100 21 Br -0.067 7.067 22 C -0.092 4.092 23 C -0.115 4.115 24 H 0.016 0.984 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.271 0.729 30 H 0.334 0.666 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 3.032 -19.392 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.013 0.987 5 C -0.629 4.629 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.300 5.300 14 C 0.002 3.998 15 H 0.101 0.899 16 C -0.233 4.233 17 C -0.035 4.035 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.180 4.180 21 Br 0.018 6.982 22 C -0.112 4.112 23 C -0.134 4.134 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.323 2.740 -18.488 18.983 hybrid contribution 0.964 0.279 -1.128 1.510 sum -2.359 3.019 -19.616 19.986 Atomic orbital electron populations 1.21447 0.96405 0.97857 1.02020 1.21540 0.96494 0.98334 0.98233 1.19263 0.93355 0.91554 0.86165 0.98736 1.21891 1.30566 1.18759 0.91700 0.92833 1.25683 0.95497 0.96908 1.00061 1.70807 1.24149 1.24121 1.35739 0.83587 0.75743 0.75452 0.75823 1.20903 1.21590 1.21374 1.60734 1.49735 1.13431 1.06065 1.20535 0.90320 0.99891 0.89046 0.89900 1.22469 0.98463 1.00267 1.02140 1.20175 0.94909 0.93314 0.95070 1.21002 0.96235 0.97722 0.96245 1.21078 0.99402 0.98529 0.92184 1.21654 1.04041 0.99787 0.92472 1.96651 1.79351 1.96180 1.26031 1.20988 0.96446 0.95812 0.97986 1.21033 1.00348 0.99655 0.92410 0.96486 0.91802 0.93610 0.96214 0.92417 0.91736 0.84754 0.92653 0.91700 0.92943 0.85021 0.85411 0.85484 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.53 37.16 0.35 -2.26 16 2 C -0.11 -2.44 5.45 -26.73 -0.15 -2.58 16 3 C 0.20 4.74 1.78 -68.86 -0.12 4.62 16 4 H 0.00 -0.12 6.30 -51.93 -0.33 -0.45 16 5 C -0.59 -15.34 6.92 -34.44 -0.24 -15.58 16 6 H 0.05 1.40 7.75 -52.48 -0.41 0.99 16 7 C 0.02 0.63 5.28 -17.82 -0.09 0.53 16 8 N -0.91 -26.20 13.20 55.43 0.73 -25.46 16 9 Si 1.07 24.34 29.91 -169.99 -5.08 19.25 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.67 -12.92 5.10 -102.17 -0.52 -13.44 16 14 C 0.11 1.84 2.63 -68.86 -0.18 1.66 16 15 H 0.08 1.42 6.62 -51.93 -0.34 1.07 16 16 C -0.17 -2.63 9.13 37.16 0.34 -2.29 16 17 C -0.03 -0.49 4.96 -104.62 -0.52 -1.01 16 18 C -0.09 -1.29 9.32 -39.59 -0.37 -1.66 16 19 C -0.09 -1.17 9.79 -39.56 -0.39 -1.56 16 20 C -0.10 -1.25 6.22 -39.52 -0.25 -1.50 16 21 Br -0.07 -0.74 33.70 -68.01 -2.29 -3.03 16 22 C -0.09 -1.12 9.79 -39.55 -0.39 -1.51 16 23 C -0.12 -1.50 9.67 -39.59 -0.38 -1.88 16 24 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 25 H 0.06 1.52 6.89 -51.93 -0.36 1.16 16 26 H 0.04 0.96 7.89 -51.93 -0.41 0.55 16 27 H 0.02 0.41 6.97 -51.93 -0.36 0.04 16 28 H 0.06 1.43 6.18 -51.93 -0.32 1.11 16 29 H 0.27 7.73 5.63 -40.82 -0.23 7.50 16 30 H 0.33 6.40 7.30 -39.29 -0.29 6.11 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.10 7.05 -51.93 -0.37 0.74 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.13 1.78 7.09 -52.49 -0.37 1.41 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.13 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -27.41 317.96 -9.87 -37.28 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.11 Total: 5.62 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -2.38 Total: -25.01 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.21 Total: -38.91 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.25 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.41 -9.87 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049525849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.273 kcal (2) G-P(sol) polarization free energy of solvation -27.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds