Wall clock time and date at job start Tue Mar 31 2020 10:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46971 * 2 1 4 4 N 1.46888 * 109.47222 * 239.99639 * 2 1 3 5 5 C 1.46904 * 111.00403 * 85.00169 * 4 2 1 6 6 C 1.53006 * 109.47371 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46861 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46912 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99864 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00035 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00050 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00222 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47159 * 90.00088 * 12 10 8 14 14 H 1.48499 * 109.47662 * 210.00480 * 12 10 8 15 15 H 1.48500 * 109.46930 * 330.00674 * 12 10 8 16 16 C 1.50702 * 109.46988 * 119.99180 * 2 1 3 17 17 C 1.38264 * 119.99053 * 80.02277 * 16 2 1 18 18 C 1.38219 * 120.02062 * 180.02562 * 17 16 2 19 19 C 1.38241 * 120.00795 * 359.95644 * 18 17 16 20 20 C 1.38307 * 119.98992 * 359.77080 * 19 18 17 21 21 Br 1.89098 * 120.01041 * 180.24670 * 20 19 18 22 22 C 1.38195 * 119.99764 * 260.00492 * 16 2 1 23 23 H 1.09000 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47272 * 300.00535 * 1 2 3 25 25 H 1.08997 * 109.46775 * 60.00427 * 1 2 3 26 26 H 1.00907 * 111.00572 * 321.04404 * 4 2 1 27 27 H 1.09000 * 109.46648 * 299.99638 * 5 4 2 28 28 H 1.08999 * 109.47312 * 59.99595 * 5 4 2 29 29 H 1.08992 * 109.46710 * 299.99731 * 6 5 4 30 30 H 1.08996 * 109.46697 * 60.00016 * 6 5 4 31 31 H 1.09000 * 109.47051 * 299.99531 * 7 6 5 32 32 H 1.09003 * 109.46949 * 59.99763 * 7 6 5 33 33 H 0.96999 * 120.00202 * 179.97438 * 11 10 8 34 34 H 1.07999 * 119.98996 * 0.02562 * 17 16 2 35 35 H 1.08001 * 119.99807 * 179.97438 * 18 17 16 36 36 H 1.07997 * 120.00466 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.00237 * 359.97099 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0826 0.2225 -2.3469 6 6 2.5952 -0.5334 -3.5744 7 6 2.6600 0.4194 -4.7697 8 6 3.1643 -0.3252 -5.9789 9 1 3.4140 -1.3732 -5.9024 10 6 3.3079 0.3316 -7.1826 11 7 3.7475 -0.3184 -8.2381 12 14 2.8767 2.1443 -7.3148 13 1 4.0777 2.9624 -7.0087 14 1 2.4121 2.4435 -8.6932 15 1 1.7975 2.4682 -6.3475 16 6 2.0323 -0.7102 1.2306 17 6 2.0671 -2.0920 1.2653 18 6 2.5272 -2.7441 2.3938 19 6 2.9537 -2.0148 3.4881 20 6 2.9244 -0.6326 3.4517 21 35 3.5142 0.3656 4.9455 22 6 2.4585 0.0196 2.3240 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.4496 -1.4980 -1.4099 27 1 1.0871 0.6161 -2.5526 28 1 2.7589 1.0461 -2.1183 29 1 3.5904 -0.9274 -3.3690 30 1 1.9184 -1.3568 -3.8028 31 1 1.6645 0.8130 -4.9750 32 1 3.3365 1.2431 -4.5415 33 1 3.8482 0.1436 -9.0850 34 1 1.7346 -2.6620 0.4103 35 1 2.5538 -3.8234 2.4207 36 1 3.3135 -2.5244 4.3697 37 1 2.4320 1.0989 2.2965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:30 Heat of formation + Delta-G solvation = 8.185968 kcal Electronic energy + Delta-G solvation = -17064.251128 eV Core-core repulsion = 14272.760278 eV Total energy + Delta-G solvation = -2791.490850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81006 -37.08058 -34.21641 -32.54352 -32.18552 -30.82659 -29.44528 -28.89979 -26.28755 -23.87579 -22.85919 -22.04156 -20.64415 -19.95048 -17.20214 -16.68431 -15.85743 -15.51012 -15.19811 -14.49479 -14.37213 -14.00678 -13.70250 -13.61882 -13.35238 -12.88111 -12.63894 -12.37143 -12.09433 -11.79184 -11.63911 -11.25842 -11.11727 -10.99851 -10.95648 -10.79973 -10.52586 -9.96677 -9.74482 -9.60853 -9.17768 -9.09823 -8.83740 -8.53146 -8.31580 -6.03449 -4.01291 0.92587 1.07474 1.38798 3.30868 3.38039 3.40383 3.41229 4.17715 4.45631 4.54053 4.61748 4.84503 4.91393 5.05318 5.11355 5.20961 5.30411 5.37398 5.48848 5.60209 5.66991 5.71043 5.77194 5.91210 5.98874 6.14728 6.16187 6.28251 6.54176 6.56684 6.60827 6.90655 7.15144 7.33251 7.41568 7.49954 7.80841 8.55551 9.02037 9.59134 11.10151 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.002399 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.694780 B =11668.695961 C =11968.973025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 H 0.087 0.913 4 N -0.682 5.682 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.519 4.519 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.055 4.055 17 C -0.082 4.082 18 C -0.115 4.115 19 C -0.099 4.099 20 C -0.089 4.089 21 Br -0.059 7.059 22 C -0.089 4.089 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.340 0.660 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 -0.560 29.449 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.008 3.992 3 H 0.106 0.894 4 N -0.312 5.312 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.557 4.557 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.056 4.056 17 C -0.100 4.100 18 C -0.133 4.133 19 C -0.119 4.119 20 C -0.169 4.169 21 Br 0.026 6.974 22 C -0.109 4.109 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.158 0.842 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.123 -0.072 29.968 30.251 hybrid contribution -1.176 0.820 -0.767 1.626 sum -5.299 0.748 29.201 29.688 Atomic orbital electron populations 1.22489 0.96083 1.02533 1.02562 1.20463 0.92749 0.97560 0.88387 0.89446 1.60624 1.56804 1.10049 1.03752 1.22198 0.99177 0.95499 0.90263 1.21442 1.00881 0.98598 0.92810 1.19539 0.96355 0.95332 0.93830 1.21151 1.43514 0.98327 0.92708 0.91030 1.25046 0.94677 0.98128 0.95763 1.69920 1.46925 1.36618 1.00921 0.86763 0.79291 0.85922 0.77189 1.20291 1.21445 1.19101 1.19855 0.97617 0.93849 0.94305 1.21112 0.97312 0.94007 0.97595 1.21174 0.99035 1.00169 0.92971 1.21065 0.99640 0.91828 0.99355 1.21689 1.06497 0.94594 0.94075 1.96702 1.88762 1.72784 1.39165 1.20945 0.98114 1.00172 0.91714 0.92154 0.92011 0.91835 0.84153 0.95523 0.91398 0.91925 0.93015 0.96865 0.97060 0.92770 0.85255 0.85187 0.85334 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.14 37.16 0.34 -1.33 16 2 C 0.12 1.29 2.79 -68.87 -0.19 1.10 16 3 H 0.09 0.97 7.66 -51.93 -0.40 0.57 16 4 N -0.68 -8.79 5.70 -107.95 -0.62 -9.41 16 5 C 0.06 0.88 5.48 -3.82 -0.02 0.86 16 6 C -0.10 -1.92 5.41 -26.73 -0.14 -2.07 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 9 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 12 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 16 C -0.05 -0.58 4.96 -104.63 -0.52 -1.10 16 17 C -0.08 -0.81 9.32 -39.58 -0.37 -1.18 16 18 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 19 C -0.10 -0.92 9.79 -39.55 -0.39 -1.30 16 20 C -0.09 -0.91 6.22 -39.52 -0.25 -1.15 16 21 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.85 16 22 C -0.09 -0.93 9.41 -39.56 -0.37 -1.30 16 23 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 26 H 0.34 4.03 7.82 -39.29 -0.31 3.72 16 27 H 0.03 0.40 7.44 -51.93 -0.39 0.01 16 28 H 0.07 1.06 8.06 -51.93 -0.42 0.65 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.13 1.18 7.25 -52.49 -0.38 0.80 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.13 1.21 8.04 -52.49 -0.42 0.79 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -30.62 326.78 -10.32 -40.94 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.59 Total: -0.66 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.85 Total: -22.75 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.16 Total: -36.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.62 -10.32 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.128 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds