Wall clock time and date at job start Tue Mar 31 2020 09:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.47014 * 2 1 4 4 C 1.34773 * 117.00117 * 179.97438 * 3 2 1 5 5 O 1.21526 * 120.00171 * 0.02562 * 4 3 2 6 6 C 1.47243 * 120.00093 * 179.97438 * 4 3 2 7 7 C 1.40039 * 120.61887 * 0.02562 * 6 4 3 8 8 C 1.38311 * 118.37167 * 179.97438 * 7 6 4 9 9 C 1.38420 * 119.52735 * 0.02562 * 8 7 6 10 10 N 1.31814 * 121.24635 * 359.97438 * 9 8 7 11 11 C 1.32510 * 121.77204 * 0.02562 * 10 9 8 12 12 S 1.76200 * 119.84051 * 179.97438 * 11 10 9 13 13 C 1.81001 * 100.00025 * 359.97438 * 12 11 10 14 14 C 1.50697 * 109.47303 * 180.02562 * 13 12 11 15 15 O 1.21218 * 119.99966 * 0.02562 * 14 13 12 16 16 O 1.34308 * 120.00026 * 180.02562 * 14 13 12 17 17 C 1.34922 * 117.00023 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00166 * 0.02562 * 17 16 14 19 19 C 1.38756 * 120.00189 * 180.02562 * 17 16 14 20 20 N 1.31442 * 119.99714 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99944 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47052 * 90.00261 * 21 19 17 23 23 H 1.48504 * 109.47027 * 209.99888 * 21 19 17 24 24 H 1.48498 * 109.47580 * 329.99888 * 21 19 17 25 25 H 1.08998 * 109.46954 * 59.99800 * 1 2 3 26 26 H 1.08996 * 109.46531 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46580 * 299.99516 * 1 2 3 28 28 H 1.09005 * 109.47247 * 240.00373 * 2 1 3 29 29 H 1.08998 * 109.47411 * 119.99924 * 2 1 3 30 30 H 1.08005 * 120.81716 * 359.97438 * 7 6 4 31 31 H 1.07993 * 120.23236 * 179.97438 * 8 7 6 32 32 H 1.07997 * 119.38011 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47209 * 300.00184 * 13 12 11 34 34 H 1.09005 * 109.47109 * 60.00121 * 13 12 11 35 35 H 0.96997 * 119.99727 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3501 1.5456 0.0005 5 8 4.0905 0.5819 0.0005 6 6 3.9129 2.9063 0.0000 7 6 3.0718 4.0260 -0.0005 8 6 3.6502 5.2824 -0.0005 9 6 5.0295 5.3984 -0.0004 10 7 5.8053 4.3328 0.0000 11 6 5.3053 3.1057 0.0000 12 16 6.3898 1.7170 0.0000 13 6 7.9881 2.5664 -0.0008 14 6 9.0985 1.5475 -0.0016 15 8 8.8353 0.3643 -0.0020 16 8 10.3797 1.9505 -0.0017 17 6 11.3247 0.9876 -0.0018 18 1 11.0354 -0.0530 -0.0023 19 6 12.6683 1.3340 -0.0015 20 7 13.0204 2.6004 -0.0004 21 14 13.9766 0.0007 -0.0024 22 1 14.3234 -0.3514 -1.4027 23 1 15.1887 0.4961 0.6981 24 1 13.4579 -1.2024 0.6966 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.9979 3.9113 -0.0010 31 1 3.0300 6.1664 -0.0013 32 1 5.4786 6.3806 0.0000 33 1 8.0675 3.1905 -0.8909 34 1 8.0681 3.1909 0.8891 35 1 13.9596 2.8426 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051774408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:38 Heat of formation + Delta-G solvation = -122.650299 kcal Electronic energy + Delta-G solvation = -22158.394536 eV Core-core repulsion = 18441.868498 eV Total energy + Delta-G solvation = -3716.526038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85804 -39.63568 -38.93357 -36.74837 -35.22041 -33.19124 -32.17172 -32.00317 -31.45299 -29.62985 -25.59110 -25.11559 -24.01746 -23.22653 -21.50180 -20.39000 -18.44445 -17.90146 -17.75171 -17.03243 -16.75876 -16.45286 -16.21885 -15.37015 -15.16975 -14.64154 -14.49842 -14.42381 -14.16521 -13.89900 -13.57575 -13.24800 -13.08879 -12.62285 -12.36998 -12.28244 -12.22307 -11.84823 -11.55681 -11.20814 -11.15418 -10.75554 -10.43917 -10.40365 -10.32062 -9.89326 -9.88175 -9.81117 -9.60270 -9.12417 -8.58486 -7.47411 -6.41399 -4.09537 0.29149 0.90201 1.54237 2.32582 2.39336 2.45684 3.11051 3.20286 3.26831 3.48135 3.48845 3.96619 4.24523 4.48803 4.50912 4.58835 4.66076 4.68229 4.75263 4.92304 5.01128 5.11034 5.15055 5.43165 5.47229 5.60145 5.62989 5.64157 5.76953 5.91888 6.18609 6.24949 6.61931 7.39198 7.49346 7.58561 7.93500 8.65334 9.06643 9.80761 10.76373 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.003058 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.593101 B = 9154.711263 C =10442.555232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.506 3.494 5 O -0.472 6.472 6 C -0.180 4.180 7 C 0.002 3.998 8 C -0.208 4.208 9 C 0.158 3.842 10 N -0.494 5.494 11 C 0.146 3.854 12 S 0.125 5.875 13 C -0.144 4.144 14 C 0.412 3.588 15 O -0.544 6.544 16 O -0.206 6.206 17 C -0.383 4.383 18 H 0.098 0.902 19 C 0.042 3.958 20 N -0.864 5.864 21 Si 0.945 3.055 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.266 1.266 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.166 0.834 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.655 4.844 0.007 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.349 3.651 5 O -0.360 6.360 6 C -0.192 4.192 7 C -0.025 4.025 8 C -0.233 4.233 9 C -0.006 4.006 10 N -0.207 5.207 11 C -0.103 4.103 12 S 0.372 5.628 13 C -0.292 4.292 14 C 0.257 3.743 15 O -0.441 6.441 16 O -0.113 6.113 17 C -0.459 4.459 18 H 0.115 0.885 19 C -0.162 4.162 20 N -0.500 5.500 21 Si 0.770 3.230 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.190 1.190 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.183 0.817 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.419 3.102 0.014 23.624 hybrid contribution 0.032 0.808 -0.011 0.808 sum -23.387 3.910 0.003 23.712 Atomic orbital electron populations 1.21807 0.92574 1.03061 1.03415 1.23069 0.95198 0.79796 1.03110 1.86499 1.23454 1.32679 1.84760 1.20709 0.80888 0.89378 0.74133 1.90868 1.59032 1.41568 1.44541 1.19464 0.92831 0.91742 1.15210 1.21775 1.00429 0.91098 0.89164 1.22010 0.96405 0.98199 1.06656 1.23135 0.90792 0.97624 0.89015 1.68428 1.38713 0.97288 1.16273 1.24239 0.94246 0.98054 0.93720 1.87709 0.92386 0.97834 1.84830 1.23449 0.95196 1.01722 1.08873 1.22160 0.84870 0.87852 0.79422 1.90603 1.84106 1.18527 1.50910 1.83867 1.12667 1.39470 1.75255 1.21286 0.83857 0.88224 1.52527 0.88469 1.25363 0.97098 0.97638 0.96090 1.70002 1.17849 1.15937 1.46259 0.85643 0.78971 0.79636 0.78771 1.19824 1.20292 1.19016 0.91500 0.90129 0.91507 0.90896 0.90896 0.83265 0.83905 0.81695 0.86348 0.86342 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.55 6.20 37.16 0.23 0.78 16 3 O -0.36 -3.93 9.54 -40.69 -0.39 -4.32 16 4 C 0.51 7.01 7.88 34.39 0.27 7.28 16 5 O -0.47 -7.99 13.59 -19.29 -0.26 -8.25 16 6 C -0.18 -2.38 5.91 -104.65 -0.62 -3.00 16 7 C 0.00 0.02 9.73 -38.88 -0.38 -0.36 16 8 C -0.21 -1.68 10.09 -39.49 -0.40 -2.08 16 9 C 0.16 1.60 11.16 -17.49 -0.20 1.40 16 10 N -0.49 -7.08 9.13 -11.66 -0.11 -7.18 16 11 C 0.15 2.26 7.02 -16.35 -0.11 2.15 16 12 S 0.13 2.38 18.12 -107.50 -1.95 0.43 16 13 C -0.14 -2.92 5.43 36.00 0.20 -2.73 16 14 C 0.41 10.73 7.92 36.00 0.29 11.02 16 15 O -0.54 -15.32 15.10 -19.06 -0.29 -15.61 16 16 O -0.21 -6.10 9.75 -20.70 -0.20 -6.30 16 17 C -0.38 -11.61 9.65 30.92 0.30 -11.31 16 18 H 0.10 2.96 6.86 -52.49 -0.36 2.60 16 19 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 20 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 21 Si 0.95 21.70 29.55 -169.99 -5.02 16.67 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.15 1.00 7.70 -52.48 -0.40 0.60 16 31 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 2.25 8.12 -51.92 -0.42 1.83 16 34 H 0.12 2.25 8.12 -51.91 -0.42 1.83 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -36.32 332.46 -6.29 -42.60 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.70 Total: -1.90 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.14 Total: 3.79 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.65 Total: -32.13 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.14 Total: -34.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.95 Total: 0.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.32 -6.29 -42.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051774408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.047 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds