Wall clock time and date at job start Tue Mar 31 2020 10:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47420 * 2 1 4 4 N 1.46498 * 109.47449 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99614 * 82.93861 * 4 3 2 6 6 H 1.08002 * 119.99631 * 171.91501 * 5 4 3 7 7 C 1.38812 * 120.00369 * 351.91185 * 5 4 3 8 8 N 1.31624 * 119.99855 * 1.08072 * 7 5 4 9 9 Si 1.86798 * 120.00159 * 181.08258 * 7 5 4 10 10 H 1.48498 * 109.47215 * 89.99821 * 9 7 5 11 11 H 1.48502 * 109.46994 * 210.00245 * 9 7 5 12 12 H 1.48501 * 109.46945 * 329.99851 * 9 7 5 13 13 C 1.46493 * 120.00004 * 262.94236 * 4 3 2 14 14 H 1.08998 * 109.47443 * 8.17355 * 13 4 3 15 15 C 1.52998 * 109.47237 * 128.17832 * 13 4 3 16 16 C 1.50707 * 109.46896 * 248.17513 * 13 4 3 17 17 C 1.38235 * 120.00699 * 337.25613 * 16 13 4 18 18 C 1.38214 * 120.00823 * 179.74924 * 17 16 13 19 19 C 1.38256 * 120.02236 * 0.54398 * 18 17 16 20 20 C 1.38196 * 120.00925 * 359.70751 * 19 18 17 21 21 C 1.38309 * 120.00317 * 157.52904 * 16 13 4 22 22 Br 1.89107 * 120.00900 * 0.02562 * 21 16 13 23 23 H 1.08993 * 109.47276 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46865 * 300.00341 * 1 2 3 25 25 H 1.09004 * 109.47345 * 59.99798 * 1 2 3 26 26 H 1.09008 * 109.46670 * 239.99909 * 2 1 3 27 27 H 1.08995 * 109.47452 * 120.00508 * 2 1 3 28 28 H 1.09004 * 109.47027 * 300.00397 * 3 2 1 29 29 H 1.09001 * 109.46895 * 59.99761 * 3 2 1 30 30 H 0.96993 * 119.99874 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47440 * 179.97438 * 15 13 4 32 32 H 1.08998 * 109.47435 * 300.00003 * 15 13 4 33 33 H 1.09004 * 109.47198 * 59.99871 * 15 13 4 34 34 H 1.08005 * 119.99137 * 359.97438 * 17 16 13 35 35 H 1.08007 * 119.98708 * 180.27489 * 18 17 16 36 36 H 1.08001 * 119.99694 * 179.72519 * 19 18 17 37 37 H 1.08004 * 120.00337 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1892 1.2968 -1.1779 6 1 5.2611 1.4268 -1.1991 7 6 3.5050 0.9821 -2.3440 8 7 2.1961 0.8446 -2.3223 9 14 4.4417 0.7537 -3.9439 10 1 4.8379 -0.6703 -4.0866 11 1 3.5748 1.1432 -5.0850 12 1 5.6572 1.6069 -3.9319 13 6 4.2380 1.5981 1.2581 14 1 3.5392 1.5542 2.0934 15 6 5.2653 0.4723 1.3928 16 6 4.9467 2.9282 1.2656 17 6 5.2413 3.5612 0.0725 18 6 5.8866 4.7834 0.0794 19 6 6.2477 5.3683 1.2791 20 6 5.9582 4.7337 2.4721 21 6 5.3073 3.5130 2.4659 22 35 4.9120 2.6436 4.0981 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.7180 0.6250 -3.1371 31 1 5.8110 0.5884 2.3292 32 1 4.7529 -0.4897 1.3874 33 1 5.9642 0.5163 0.5575 34 1 4.9640 3.1022 -0.8650 35 1 6.1127 5.2798 -0.8528 36 1 6.7558 6.3212 1.2838 37 1 6.2399 5.1909 3.4092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052134868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:31 Heat of formation + Delta-G solvation = 60.863375 kcal Electronic energy + Delta-G solvation = -18842.990514 eV Core-core repulsion = 16053.783929 eV Total energy + Delta-G solvation = -2789.206586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.11886 -36.43994 -33.31669 -31.95965 -31.45791 -29.71800 -28.94731 -28.11818 -25.67026 -23.72700 -22.23238 -21.56839 -20.01691 -19.61455 -17.14953 -15.68116 -15.49742 -14.91998 -14.27625 -13.67486 -13.48899 -13.23453 -13.05598 -12.91824 -12.80351 -12.04485 -11.95034 -11.56519 -11.23013 -11.09173 -10.96735 -10.78286 -10.55568 -10.50039 -10.34542 -10.22835 -9.98589 -9.89193 -9.64984 -9.37241 -9.32969 -8.32304 -8.26283 -8.12817 -6.83969 -5.62998 -3.14616 1.59196 1.84292 2.04130 3.34493 3.41027 3.42765 4.15737 4.43101 5.16257 5.20726 5.31793 5.47663 5.62558 5.78089 5.96792 6.09063 6.21022 6.29941 6.33144 6.36650 6.44118 6.57784 6.61488 6.70094 6.74091 6.83392 6.99138 7.02734 7.08777 7.20893 7.34784 7.44976 7.51948 7.60567 7.97091 8.22380 8.45733 9.26764 9.86223 10.29901 11.25552 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.006320 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.202216 B = 4429.664419 C = 5515.072884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.174 3.826 4 N -0.596 5.596 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.006 4.006 8 N -0.898 5.898 9 Si 0.904 3.096 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.201 3.799 14 H 0.072 0.928 15 C -0.146 4.146 16 C -0.051 4.051 17 C -0.101 4.101 18 C -0.117 4.117 19 C -0.134 4.134 20 C -0.106 4.106 21 C -0.096 4.096 22 Br -0.070 7.070 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.008 0.992 28 H 0.105 0.895 29 H -0.005 1.005 30 H 0.249 0.751 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.176 0.824 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 5.105 9.616 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.050 3.950 4 N -0.316 5.316 5 C -0.368 4.368 6 H 0.097 0.903 7 C -0.202 4.202 8 N -0.545 5.545 9 Si 0.734 3.266 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.092 3.908 14 H 0.090 0.910 15 C -0.205 4.205 16 C -0.056 4.056 17 C -0.119 4.119 18 C -0.136 4.136 19 C -0.153 4.153 20 C -0.126 4.126 21 C -0.176 4.176 22 Br 0.015 6.985 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.027 0.973 28 H 0.122 0.878 29 H 0.013 0.987 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.192 0.808 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.506 4.739 10.062 12.001 hybrid contribution 0.587 0.065 -1.097 1.246 sum 5.093 4.803 8.966 11.375 Atomic orbital electron populations 1.21600 0.98891 0.98831 0.99938 1.22307 0.92560 1.00491 1.00488 1.21160 0.80946 0.94655 0.98256 1.44248 1.02032 1.84311 1.01050 1.19207 0.91803 1.40098 0.85724 0.90309 1.24838 0.95903 1.01404 0.98096 1.70201 1.05253 1.53315 1.25750 0.86254 0.78716 0.77981 0.83622 1.21672 1.21766 1.20717 1.19385 0.92554 0.88578 0.90271 0.91037 1.22082 0.99339 0.98849 1.00219 1.21082 0.95134 0.98513 0.90862 1.22425 0.94591 0.93771 1.01082 1.21401 0.98476 0.96120 0.97569 1.21000 1.01986 0.99993 0.92367 1.20868 0.99290 0.93989 0.98445 1.21671 1.07149 0.97772 0.90983 1.96564 1.94137 1.79721 1.28047 0.95297 0.95389 0.92847 0.88390 0.97347 0.87776 0.98697 0.93944 0.93857 0.92544 0.92541 0.80765 0.86304 0.86392 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.91 37.16 0.37 -2.28 16 2 C -0.12 -2.70 5.48 -26.73 -0.15 -2.84 16 3 C 0.17 4.08 4.97 -4.04 -0.02 4.06 16 4 N -0.60 -13.76 2.26 -166.98 -0.38 -14.14 16 5 C -0.24 -5.83 6.31 -15.06 -0.09 -5.92 16 6 H 0.08 1.89 5.88 -52.49 -0.31 1.58 16 7 C -0.01 -0.16 5.25 -17.43 -0.09 -0.25 16 8 N -0.90 -23.12 7.20 55.49 0.40 -22.72 16 9 Si 0.90 20.45 29.55 -169.99 -5.02 15.43 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.20 4.08 2.41 -69.08 -0.17 3.91 16 14 H 0.07 1.46 6.66 -51.93 -0.35 1.11 16 15 C -0.15 -2.78 8.96 37.16 0.33 -2.45 16 16 C -0.05 -0.98 5.07 -104.59 -0.53 -1.51 16 17 C -0.10 -1.93 8.79 -39.59 -0.35 -2.28 16 18 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 19 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 20 C -0.11 -1.60 9.79 -39.56 -0.39 -1.99 16 21 C -0.10 -1.63 6.22 -39.52 -0.25 -1.88 16 22 Br -0.07 -1.06 31.09 -68.01 -2.11 -3.18 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.10 2.51 5.91 -51.92 -0.31 2.20 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.10 2.70 5.85 -51.93 -0.30 2.40 16 29 H -0.01 -0.12 7.85 -51.93 -0.41 -0.53 16 30 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16 31 H 0.04 0.74 7.29 -51.93 -0.38 0.36 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.12 7.02 -51.93 -0.36 0.75 16 34 H 0.18 3.75 4.27 -52.48 -0.22 3.53 16 35 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -24.78 308.60 -9.75 -34.53 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.16 Total: 3.49 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.13 Total: -18.07 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.02 Total: -36.86 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -2.11 Total: -3.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -24.78 -9.75 -34.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052134868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.393 kcal (2) G-P(sol) polarization free energy of solvation -24.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds