Wall clock time and date at job start Tue Mar 31 2020 09:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76200 * 103.00002 * 2 1 4 4 C 1.39097 * 120.00679 * 0.29602 * 3 2 1 5 5 C 1.38182 * 120.22665 * 180.25866 * 4 3 2 6 6 C 1.38030 * 120.23825 * 359.44244 * 5 4 3 7 7 N 1.48024 * 119.99784 * 180.25715 * 6 5 4 8 8 O 1.21804 * 119.99581 * 353.44489 * 7 6 5 9 9 O 1.21793 * 120.00599 * 173.44049 * 7 6 5 10 10 C 1.39640 * 120.01147 * 0.27951 * 6 5 4 11 11 C 1.47747 * 120.11353 * 180.02562 * 10 6 5 12 12 O 1.21466 * 120.00206 * 304.69218 * 11 10 6 13 13 O 1.34712 * 119.99856 * 124.69034 * 11 10 6 14 14 C 1.45195 * 116.99814 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46966 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47364 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99849 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00268 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47219 * 89.99905 * 20 18 16 22 22 H 1.48499 * 109.46976 * 209.99639 * 20 18 16 23 23 H 1.48500 * 109.47182 * 329.99884 * 20 18 16 24 24 C 1.38689 * 120.00931 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47655 * 299.99883 * 1 2 3 26 26 H 1.08996 * 109.47225 * 60.00492 * 1 2 3 27 27 H 1.09010 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.88396 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.88102 * 179.72329 * 5 4 3 30 30 H 1.08995 * 109.47775 * 300.00171 * 14 13 11 31 31 H 1.09005 * 109.46906 * 60.00430 * 14 13 11 32 32 H 1.09001 * 109.47330 * 299.99795 * 15 14 13 33 33 H 1.08998 * 109.47550 * 60.00239 * 15 14 13 34 34 H 0.96996 * 119.99699 * 179.97438 * 19 18 16 35 35 H 1.08003 * 120.12203 * 0.04320 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1931 2.6656 0.0062 5 6 1.4988 4.0132 0.0009 6 6 2.8155 4.4273 0.0009 7 7 3.1368 5.8723 0.0009 8 8 2.2460 6.6942 -0.1196 9 8 4.2919 6.2394 0.1214 10 6 3.8445 3.4834 0.0005 11 6 5.2547 3.9242 0.0011 12 8 5.6560 4.6774 -0.8632 13 8 6.0955 3.4907 0.9602 14 6 7.4664 3.9651 0.8987 15 6 8.2642 3.3711 2.0613 16 6 9.6869 3.8639 1.9979 17 1 9.9918 4.5335 1.2071 18 6 10.5998 3.4592 2.9487 19 7 10.2287 2.6436 3.9113 20 14 12.3635 4.0696 2.8695 21 1 12.4867 5.3293 3.6462 22 1 13.2688 3.0427 3.4449 23 1 12.7369 4.3220 1.4546 24 6 3.5365 2.1225 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 0.1610 2.3479 0.0106 29 1 0.7046 4.7450 0.0012 30 1 7.9155 3.6571 -0.0455 31 1 7.4779 5.0528 0.9688 32 1 7.8150 3.6796 3.0053 33 1 8.2527 2.2834 1.9917 34 1 10.8710 2.3586 4.5799 35 1 4.3281 1.3878 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053942039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:41 Heat of formation + Delta-G solvation = -61.587198 kcal Electronic energy + Delta-G solvation = -22651.402777 eV Core-core repulsion = 18937.524633 eV Total energy + Delta-G solvation = -3713.878144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.28990 -40.34452 -39.15035 -36.62098 -36.06521 -33.37760 -32.71005 -32.31321 -30.26493 -29.62689 -27.09747 -25.42450 -24.26443 -23.02279 -21.62306 -20.77928 -19.43391 -18.63887 -18.53781 -17.58484 -17.24913 -16.48051 -16.23397 -15.98891 -15.74037 -15.38202 -14.88989 -14.56992 -14.49553 -13.73242 -13.68577 -13.35301 -13.17094 -12.77346 -12.45384 -12.35688 -11.57835 -11.35634 -11.14591 -11.08558 -11.05941 -10.95716 -10.84430 -10.71873 -10.69716 -10.41183 -9.91318 -9.66286 -9.64821 -9.30138 -8.43387 -8.20748 -6.09626 -4.13797 -0.59910 0.25214 0.66569 1.05326 1.25469 1.62754 2.24925 2.58482 2.92120 3.30590 3.36436 3.40705 3.84595 4.06638 4.30566 4.31061 4.39389 4.40543 4.42288 4.76450 4.95908 5.02134 5.09133 5.18901 5.27238 5.27510 5.65326 6.03755 6.11804 6.27573 6.62551 6.81370 7.53310 7.59890 7.61575 7.83915 8.01681 8.23799 8.91597 9.50629 11.01912 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003331 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.119054 B = 8404.876896 C = 9944.048992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 S -0.061 6.061 3 C -0.049 4.049 4 C -0.123 4.123 5 C -0.033 4.033 6 C -0.019 4.019 7 N 0.023 4.977 8 O -0.165 6.165 9 O -0.122 6.122 10 C -0.013 4.013 11 C 0.496 3.504 12 O -0.469 6.469 13 O -0.345 6.345 14 C 0.075 3.925 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.061 0.939 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.058 4.058 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.463 -6.073 -8.018 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 S 0.185 5.815 3 C -0.163 4.163 4 C -0.148 4.148 5 C -0.054 4.054 6 C -0.105 4.105 7 N 0.544 4.456 8 O -0.377 6.377 9 O -0.344 6.344 10 C -0.018 4.018 11 C 0.336 3.664 12 O -0.356 6.356 13 O -0.261 6.261 14 C 0.003 3.997 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.079 0.921 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.082 4.082 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.135 0.865 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.788 -7.762 -8.109 26.304 hybrid contribution 0.238 1.841 -0.008 1.857 sum -23.551 -5.921 -8.118 25.604 Atomic orbital electron populations 1.23879 0.94446 1.08105 1.06283 1.86012 1.06485 0.99219 1.89782 1.22216 0.96149 0.99051 0.98865 1.21301 0.99590 0.91230 1.02719 1.20842 0.93922 0.97066 0.93532 1.21034 0.94970 0.80636 1.13893 1.43445 1.01016 1.02706 0.98434 1.94496 1.41601 1.48104 1.53498 1.94723 1.04116 1.84411 1.51115 1.19053 0.91457 0.92968 0.98333 1.20485 0.85797 0.78779 0.81363 1.90902 1.77031 1.30926 1.36706 1.86618 1.24712 1.66869 1.47883 1.23813 0.73700 0.99681 1.02503 1.19189 0.93205 0.97150 0.91654 1.20972 0.93680 1.29441 1.12254 0.92110 1.24979 0.99186 0.94877 0.95095 1.69974 1.35167 1.33363 1.14392 0.86460 0.83815 0.78527 0.78455 1.20433 1.21096 1.19674 1.20979 0.95788 0.93481 0.97991 0.89010 0.89107 0.86517 0.83075 0.81852 0.91961 0.91430 0.95267 0.95352 0.92723 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 9.15 101.05 0.92 0.49 16 2 S -0.06 -0.41 22.56 -107.50 -2.43 -2.84 16 3 C -0.05 -0.42 6.11 -39.10 -0.24 -0.66 16 4 C -0.12 -0.85 9.36 -39.28 -0.37 -1.22 16 5 C -0.03 -0.30 9.54 -39.68 -0.38 -0.67 16 6 C -0.02 -0.26 6.86 -79.50 -0.55 -0.80 16 7 N 0.02 0.37 4.45 34.18 0.15 0.53 16 8 O -0.16 -2.57 18.46 -29.46 -0.54 -3.11 16 9 O -0.12 -2.39 14.98 -37.09 -0.56 -2.95 16 10 C -0.01 -0.19 5.75 -105.01 -0.60 -0.80 16 11 C 0.50 9.25 5.98 34.62 0.21 9.46 16 12 O -0.47 -9.85 14.55 -27.26 -0.40 -10.25 16 13 O -0.34 -7.04 10.23 -40.53 -0.41 -7.45 16 14 C 0.08 1.69 5.41 37.16 0.20 1.89 16 15 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 16 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 24 C -0.06 -0.66 9.53 -38.93 -0.37 -1.03 16 25 H 0.09 0.17 7.73 -51.92 -0.40 -0.23 16 26 H 0.09 0.15 7.76 -51.93 -0.40 -0.25 16 27 H 0.12 0.18 8.14 -51.92 -0.42 -0.25 16 28 H 0.15 0.50 5.86 -52.49 -0.31 0.19 16 29 H 0.16 1.09 7.61 -52.49 -0.40 0.69 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -33.75 330.75 -8.81 -42.55 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: -3.59 Total: -5.98 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.73 Total: -6.34 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.89 Total: -25.12 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -1.91 Total: -23.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.43 Total: -2.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.75 -8.81 -42.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053942039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.034 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds