Wall clock time and date at job start Tue Mar 31 2020 10:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46983 * 2 1 4 4 H 1.09000 * 109.47758 * 181.42366 * 3 2 1 5 5 C 1.50696 * 109.47407 * 301.42738 * 3 2 1 6 6 H 1.08004 * 120.00544 * 119.99667 * 5 3 2 7 7 C 1.37873 * 120.00002 * 299.99773 * 5 3 2 8 8 N 1.31516 * 119.99945 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00220 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47099 * 59.99932 * 9 7 5 11 11 H 1.48507 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46764 * 299.99849 * 9 7 5 13 13 N 1.46903 * 109.46889 * 61.42502 * 3 2 1 14 14 C 1.46901 * 110.99970 * 86.09420 * 13 3 2 15 15 H 1.09001 * 109.47318 * 327.16383 * 14 13 3 16 16 C 1.52992 * 109.47414 * 87.16672 * 14 13 3 17 17 C 1.50705 * 109.47087 * 207.16904 * 14 13 3 18 18 C 1.38240 * 120.00311 * 339.72323 * 17 14 13 19 19 C 1.38221 * 120.01019 * 179.74982 * 18 17 14 20 20 C 1.38269 * 120.01780 * 0.54865 * 19 18 17 21 21 C 1.38200 * 120.00794 * 359.70219 * 20 19 18 22 22 C 1.38301 * 120.00815 * 159.99849 * 17 14 13 23 23 Br 1.89107 * 120.00769 * 359.97438 * 22 17 14 24 24 H 1.09001 * 109.47007 * 305.37803 * 1 2 3 25 25 H 1.08997 * 109.47298 * 65.38172 * 1 2 3 26 26 H 1.09001 * 109.46624 * 185.38574 * 1 2 3 27 27 H 1.09005 * 109.47144 * 240.00710 * 2 1 3 28 28 H 1.08997 * 109.47460 * 120.00070 * 2 1 3 29 29 H 0.97004 * 120.00373 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00171 * 210.04796 * 13 3 2 31 31 H 1.09001 * 109.47187 * 180.02562 * 16 14 13 32 32 H 1.09000 * 109.47013 * 300.00197 * 16 14 13 33 33 H 1.09009 * 109.47250 * 59.99888 * 16 14 13 34 34 H 1.08004 * 119.99550 * 359.97438 * 18 17 14 35 35 H 1.07996 * 119.99123 * 180.26996 * 19 18 17 36 36 H 1.08000 * 119.99450 * 179.72833 * 20 19 18 37 37 H 1.07994 * 120.00388 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4428 -0.0255 5 6 1.5090 2.1631 -1.2123 6 1 0.8906 3.0403 -1.0915 7 6 1.8126 1.7026 -2.4759 8 7 2.5660 0.6347 -2.6232 9 14 1.1550 2.5962 -3.9788 10 1 1.6504 3.9960 -3.9785 11 1 1.6208 1.9059 -5.2084 12 1 -0.3296 2.5965 -3.9442 13 7 1.5786 2.1250 1.2163 14 6 2.5027 1.8909 2.3340 15 1 2.9406 0.8971 2.2414 16 6 3.6137 2.9424 2.3059 17 6 1.7509 1.9892 3.6364 18 6 0.5411 2.6561 3.6877 19 6 -0.1510 2.7419 4.8810 20 6 0.3717 2.1704 6.0265 21 6 1.5836 1.5079 5.9772 22 6 2.2739 1.4170 4.7818 23 35 3.9322 0.5106 4.7138 24 1 -0.3633 0.5950 0.8379 25 1 -0.3634 0.4281 -0.9342 26 1 -0.3632 -1.0232 0.0965 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.7793 0.3105 -3.5122 30 1 1.4532 3.1125 1.0515 31 1 4.2997 2.7684 3.1350 32 1 4.1574 2.8713 1.3639 33 1 3.1758 3.9363 2.3985 34 1 0.1349 3.1072 2.7943 35 1 -1.0982 3.2592 4.9198 36 1 -0.1673 2.2414 6.9596 37 1 1.9916 1.0613 6.8718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:17 Heat of formation + Delta-G solvation = 18.956059 kcal Electronic energy + Delta-G solvation = -18388.285808 eV Core-core repulsion = 15597.261985 eV Total energy + Delta-G solvation = -2791.023824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39554 -36.64856 -33.81323 -32.18288 -31.29477 -29.99652 -29.05562 -28.11692 -25.82547 -23.41208 -23.23534 -21.99095 -20.40721 -18.80521 -17.01153 -16.07067 -15.42000 -14.90345 -14.75488 -14.05839 -13.80806 -13.38230 -13.23340 -13.16843 -12.79339 -12.45306 -11.93435 -11.90090 -11.66697 -11.23489 -11.01849 -10.90808 -10.79312 -10.65229 -10.57449 -10.32788 -10.08629 -9.87937 -9.68618 -9.35185 -8.78872 -8.65591 -8.49515 -8.43558 -7.28551 -6.01527 -4.07072 1.27328 1.49722 1.82023 3.30298 3.35564 3.37672 3.80886 4.39487 4.85461 4.94292 5.14762 5.25262 5.31538 5.47516 5.63943 5.69858 5.72838 5.91202 6.04889 6.20528 6.32332 6.38505 6.50638 6.57998 6.62851 6.72676 6.75276 6.88972 7.01742 7.27110 7.33525 7.51266 7.74069 7.79429 7.85330 8.25297 8.37500 8.64178 9.01376 9.57597 11.04361 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.021134 B = 0.004694 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.581490 B = 5963.363644 C = 6580.582213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.677 5.677 14 C 0.111 3.889 15 H 0.091 0.909 16 C -0.172 4.172 17 C -0.027 4.027 18 C -0.088 4.088 19 C -0.110 4.110 20 C -0.130 4.130 21 C -0.097 4.097 22 C -0.094 4.094 23 Br -0.058 7.058 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.011 0.989 27 H 0.085 0.915 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.331 0.669 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 1.933 16.851 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.307 5.307 14 C 0.000 4.000 15 H 0.109 0.891 16 C -0.231 4.231 17 C -0.029 4.029 18 C -0.107 4.107 19 C -0.129 4.129 20 C -0.149 4.149 21 C -0.117 4.117 22 C -0.174 4.174 23 Br 0.027 6.973 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.104 0.896 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.326 0.950 16.829 16.859 hybrid contribution 0.023 1.102 -1.066 1.533 sum 0.348 2.052 15.763 15.900 Atomic orbital electron populations 1.21428 0.97560 0.97109 1.01458 1.21437 0.95050 0.98275 0.99326 1.19112 0.93368 0.91436 0.84931 0.97897 1.21118 1.31759 1.11954 0.90332 0.92418 1.24864 0.95061 0.94987 0.98807 1.69878 1.37046 1.22940 1.22773 0.86659 0.79365 0.79701 0.82249 1.20430 1.21391 1.20257 1.60779 1.46926 1.16109 1.06935 1.20567 0.90766 0.99879 0.88790 0.89062 1.22433 0.99282 0.98877 1.02523 1.20033 0.94898 0.94120 0.93898 1.21149 0.93618 0.97931 0.98044 1.21309 0.99713 0.98988 0.92844 1.21037 0.95799 0.99424 0.98656 1.20961 0.95195 0.99428 0.96145 1.21673 0.94470 1.04684 0.96537 1.96648 1.25479 1.76164 1.98992 0.93484 0.92998 0.96964 0.89644 0.97201 0.92917 0.85081 0.92545 0.91564 0.92891 0.84145 0.85870 0.85873 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.47 37.16 0.35 -2.30 16 2 C -0.10 -2.47 5.56 -26.73 -0.15 -2.61 16 3 C 0.22 5.24 2.11 -68.86 -0.14 5.09 16 4 H 0.00 0.09 7.28 -51.93 -0.38 -0.29 16 5 C -0.51 -13.31 7.36 -34.44 -0.25 -13.56 16 6 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.75 11.33 55.43 0.63 -24.12 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.43 4.06 -102.17 -0.41 -13.84 16 14 C 0.11 1.96 2.00 -68.87 -0.14 1.82 16 15 H 0.09 1.78 6.19 -51.93 -0.32 1.46 16 16 C -0.17 -2.80 9.05 37.15 0.34 -2.47 16 17 C -0.03 -0.43 5.09 -104.60 -0.53 -0.96 16 18 C -0.09 -1.29 9.33 -39.59 -0.37 -1.66 16 19 C -0.11 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 21 C -0.10 -1.22 9.79 -39.56 -0.39 -1.61 16 22 C -0.09 -1.37 6.22 -39.52 -0.25 -1.62 16 23 Br -0.06 -0.82 30.85 -68.01 -2.10 -2.92 16 24 H 0.05 1.01 7.49 -51.93 -0.39 0.63 16 25 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 2.29 6.11 -51.93 -0.32 1.97 16 28 H 0.01 0.22 7.52 -51.93 -0.39 -0.17 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 30 H 0.33 6.40 7.54 -39.29 -0.30 6.10 16 31 H 0.06 0.85 6.98 -51.93 -0.36 0.48 16 32 H 0.07 1.18 7.60 -51.93 -0.39 0.78 16 33 H 0.05 0.80 8.13 -51.92 -0.42 0.38 16 34 H 0.14 2.07 6.90 -52.48 -0.36 1.71 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -26.99 315.82 -9.81 -36.80 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.24 Total: 5.36 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.42 Total: -21.86 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.21 Total: -37.96 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -2.10 Total: -2.92 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.99 -9.81 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.755 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds