Wall clock time and date at job start Tue Mar 31 2020 10:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46857 * 2 1 4 4 H 1.09004 * 109.46578 * 305.37507 * 3 2 1 5 5 C 1.50701 * 109.46934 * 185.37927 * 3 2 1 6 6 H 1.07995 * 119.99706 * 239.99026 * 5 3 2 7 7 C 1.37876 * 119.99898 * 60.00458 * 5 3 2 8 8 N 1.31516 * 120.00267 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99809 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46840 * 89.99666 * 9 7 5 11 11 H 1.48494 * 109.46731 * 209.99634 * 9 7 5 12 12 H 1.48497 * 109.46928 * 329.99384 * 9 7 5 13 13 N 1.46890 * 109.47212 * 65.37789 * 3 2 1 14 14 C 1.46897 * 111.00202 * 205.56866 * 13 3 2 15 15 H 1.08999 * 109.47421 * 322.19417 * 14 13 3 16 16 C 1.53005 * 109.47305 * 82.19324 * 14 13 3 17 17 C 1.50700 * 109.47583 * 202.19421 * 14 13 3 18 18 C 1.38242 * 120.00140 * 339.72346 * 17 14 13 19 19 C 1.38221 * 120.00907 * 179.78882 * 18 17 14 20 20 C 1.38265 * 120.01892 * 0.46859 * 19 18 17 21 21 C 1.38196 * 120.01098 * 359.78669 * 20 19 18 22 22 C 1.38300 * 120.01010 * 159.99907 * 17 14 13 23 23 Br 1.89107 * 120.00729 * 359.97438 * 22 17 14 24 24 H 1.09011 * 109.46767 * 184.60470 * 1 2 3 25 25 H 1.08996 * 109.47407 * 304.59962 * 1 2 3 26 26 H 1.08998 * 109.47568 * 64.60951 * 1 2 3 27 27 H 1.09000 * 109.47552 * 240.00355 * 2 1 3 28 28 H 1.08997 * 109.47469 * 119.99407 * 2 1 3 29 29 H 0.96998 * 120.00033 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00470 * 81.61587 * 13 3 2 31 31 H 1.09007 * 109.46809 * 304.69699 * 16 14 13 32 32 H 1.09005 * 109.46668 * 64.68839 * 16 14 13 33 33 H 1.08993 * 109.47234 * 184.68933 * 16 14 13 34 34 H 1.08002 * 119.99531 * 0.02562 * 18 17 14 35 35 H 1.07997 * 119.99241 * 180.22991 * 19 18 17 36 36 H 1.07998 * 119.99578 * 179.76674 * 20 19 18 37 37 H 1.08000 * 120.00887 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6000 1.9834 -0.8380 5 6 3.5410 1.4447 -0.1332 6 1 4.1510 1.8877 0.6400 7 6 4.1354 0.8813 -1.2424 8 7 3.3925 0.3417 -2.1839 9 14 5.9962 0.8846 -1.4078 10 1 6.5500 -0.3482 -0.7923 11 1 6.3651 0.9289 -2.8455 12 1 6.5524 2.0757 -0.7171 13 7 1.6591 2.0966 1.2590 14 6 1.5660 3.5527 1.0887 15 1 2.3568 3.8916 0.4194 16 6 0.2038 3.9103 0.4908 17 6 1.7189 4.2259 2.4283 18 6 1.4943 3.5119 3.5905 19 6 1.6388 4.1281 4.8193 20 6 1.9986 5.4614 4.8864 21 6 2.2182 6.1774 3.7250 22 6 2.0784 5.5597 2.4950 23 35 2.3789 6.5389 0.9053 24 1 -0.3633 -1.0245 0.0825 25 1 -0.3634 0.5835 0.8459 26 1 -0.3634 0.4406 -0.9284 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.8108 -0.0550 -2.9640 30 1 2.3029 1.8595 1.9988 31 1 0.0584 3.3581 -0.4378 32 1 -0.5835 3.6468 1.1972 33 1 0.1660 4.9803 0.2871 34 1 1.2097 2.4713 3.5384 35 1 1.4669 3.5689 5.7271 36 1 2.1077 5.9435 5.8467 37 1 2.4996 7.2188 3.7775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:19 Heat of formation + Delta-G solvation = 17.150758 kcal Electronic energy + Delta-G solvation = -18379.948944 eV Core-core repulsion = 15588.846837 eV Total energy + Delta-G solvation = -2791.102107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44432 -36.50784 -33.69361 -32.18768 -31.50047 -29.95434 -29.11495 -28.37408 -25.97988 -23.43847 -22.71611 -21.93052 -19.96096 -19.31576 -16.94901 -16.34288 -15.54740 -14.98184 -14.67264 -14.07253 -13.83796 -13.62709 -13.26964 -13.01227 -12.74251 -12.09974 -11.96763 -11.58243 -11.49072 -11.25764 -11.16303 -11.03283 -10.81831 -10.67940 -10.59063 -10.40738 -10.10009 -9.85821 -9.58505 -9.50041 -9.04590 -8.69711 -8.46213 -8.35687 -7.30358 -5.99172 -4.11599 1.24106 1.44070 1.84703 3.27486 3.34797 3.38218 3.76573 4.40499 4.86070 4.91827 5.09832 5.21875 5.29397 5.45252 5.58873 5.77502 5.93589 6.04981 6.16868 6.25177 6.37272 6.40080 6.50370 6.53085 6.57224 6.68944 6.76846 6.82503 6.97879 7.13437 7.18535 7.44978 7.59652 7.78535 8.08107 8.14542 8.32452 8.63478 9.00168 9.56088 11.01100 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.005757 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.771116 B = 4862.449894 C = 5535.275061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.117 3.883 15 H 0.069 0.931 16 C -0.130 4.130 17 C -0.041 4.041 18 C -0.103 4.103 19 C -0.108 4.108 20 C -0.129 4.129 21 C -0.095 4.095 22 C -0.090 4.090 23 Br -0.052 7.052 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.328 0.672 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 11.143 10.446 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.313 5.313 14 C 0.006 3.994 15 H 0.087 0.913 16 C -0.188 4.188 17 C -0.043 4.043 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.148 4.148 21 C -0.115 4.115 22 C -0.170 4.170 23 Br 0.033 6.967 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.074 11.318 9.545 15.651 hybrid contribution 2.056 0.003 0.155 2.062 sum -3.019 11.321 9.699 15.211 Atomic orbital electron populations 1.21719 0.99021 0.98441 1.00388 1.21489 0.92085 0.99189 1.01638 1.19169 0.92815 0.91210 0.86036 0.94658 1.21851 0.92757 1.38280 1.05451 0.92958 1.24899 0.97756 0.94994 0.95691 1.69871 1.34710 1.38309 1.09370 0.86700 0.86296 0.78418 0.77260 1.20665 1.21184 1.20017 1.61088 1.54956 1.04745 1.10532 1.20470 0.98208 0.90063 0.90631 0.91321 1.21738 0.95840 1.00133 1.01071 1.20200 0.95090 0.91738 0.97253 1.21229 0.98941 1.01137 0.90853 1.21293 0.98513 0.94818 0.97977 1.21056 1.01374 0.94735 0.97658 1.21003 0.99715 0.99926 0.90899 1.21725 1.08085 0.95223 0.91990 1.96672 1.95245 1.72286 1.32460 0.95736 0.93101 0.94561 0.89156 0.95195 0.92901 0.85417 0.91769 0.92955 0.93098 0.83841 0.85749 0.85767 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.86 37.15 0.37 -2.42 16 2 C -0.11 -2.47 5.45 -26.73 -0.15 -2.62 16 3 C 0.22 5.17 1.77 -68.86 -0.12 5.05 16 4 H 0.04 0.94 6.89 -51.93 -0.36 0.59 16 5 C -0.54 -14.49 8.28 -34.44 -0.29 -14.78 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 N -0.68 -13.70 4.67 -102.17 -0.48 -14.18 16 14 C 0.12 2.17 2.06 -68.86 -0.14 2.03 16 15 H 0.07 1.47 6.69 -51.93 -0.35 1.12 16 16 C -0.13 -2.24 9.30 37.16 0.35 -1.90 16 17 C -0.04 -0.66 4.99 -104.60 -0.52 -1.18 16 18 C -0.10 -1.49 8.89 -39.59 -0.35 -1.84 16 19 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 20 C -0.13 -1.48 10.05 -39.59 -0.40 -1.88 16 21 C -0.10 -1.22 9.79 -39.56 -0.39 -1.61 16 22 C -0.09 -1.37 6.22 -39.52 -0.25 -1.62 16 23 Br -0.05 -0.78 30.84 -68.01 -2.10 -2.88 16 24 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.05 0.98 7.64 -51.93 -0.40 0.58 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 2.38 5.94 -51.93 -0.31 2.07 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.33 6.58 6.85 -39.29 -0.27 6.31 16 31 H 0.06 1.19 7.17 -51.93 -0.37 0.82 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.81 6.97 -51.93 -0.36 0.45 16 34 H 0.14 2.07 6.77 -52.49 -0.36 1.71 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -27.30 317.35 -9.84 -37.13 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.27 Total: 5.77 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -2.38 Total: -22.66 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.15 Total: -38.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.10 Total: -2.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.30 -9.84 -37.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.283 kcal (2) G-P(sol) polarization free energy of solvation -27.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds