Wall clock time and date at job start Tue Mar 31 2020 10:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47158 * 2 1 4 4 H 1.08997 * 109.47364 * 54.37284 * 3 2 1 5 5 C 1.50707 * 109.47351 * 174.37495 * 3 2 1 6 6 H 1.08001 * 119.99646 * 119.99965 * 5 3 2 7 7 C 1.37878 * 119.99815 * 299.99749 * 5 3 2 8 8 N 1.31512 * 119.99889 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99797 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46953 * 60.00366 * 9 7 5 11 11 H 1.48503 * 109.46630 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47036 * 299.99865 * 9 7 5 13 13 N 1.46897 * 109.47325 * 294.37270 * 3 2 1 14 14 C 1.46905 * 111.00373 * 155.59487 * 13 3 2 15 15 H 1.08994 * 109.46684 * 33.25535 * 14 13 3 16 16 C 1.52998 * 109.47042 * 273.25740 * 14 13 3 17 17 C 1.50697 * 109.47087 * 153.25581 * 14 13 3 18 18 C 1.38240 * 120.00773 * 25.00514 * 17 14 13 19 19 C 1.38224 * 120.01201 * 179.97438 * 18 17 14 20 20 C 1.38260 * 120.01804 * 0.02562 * 19 18 17 21 21 C 1.38194 * 120.01221 * 359.97438 * 20 19 18 22 22 C 1.38307 * 120.00498 * 204.72358 * 17 14 13 23 23 Br 1.89097 * 120.00899 * 0.02831 * 22 17 14 24 24 H 1.08993 * 109.47525 * 65.64611 * 1 2 3 25 25 H 1.09005 * 109.46843 * 185.64564 * 1 2 3 26 26 H 1.08997 * 109.46567 * 305.63914 * 1 2 3 27 27 H 1.09000 * 109.47210 * 239.99914 * 2 1 3 28 28 H 1.09004 * 109.47570 * 120.00070 * 2 1 3 29 29 H 0.97007 * 119.99889 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00081 * 31.64277 * 13 3 2 31 31 H 1.09005 * 109.47251 * 304.96202 * 16 14 13 32 32 H 1.08996 * 109.47313 * 64.96497 * 16 14 13 33 33 H 1.09005 * 109.46899 * 184.96392 * 16 14 13 34 34 H 1.07997 * 119.99418 * 359.97438 * 18 17 14 35 35 H 1.07997 * 119.98867 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.99583 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.00975 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9846 0.8353 5 6 3.5406 1.4448 0.1393 6 1 4.1538 1.8866 -0.6323 7 6 4.1305 0.8829 1.2516 8 7 3.3838 0.3446 2.1908 9 14 5.9906 0.8852 1.4239 10 1 6.4860 2.2851 1.4236 11 1 6.3703 0.2255 2.6990 12 1 6.5940 0.1462 0.2859 13 7 1.6644 2.0946 -1.2615 14 6 1.5976 3.5533 -1.1006 15 1 2.3455 3.8734 -0.3753 16 6 0.2049 3.9485 -0.6054 17 6 1.8667 4.2177 -2.4262 18 6 1.6163 3.5381 -3.6036 19 6 1.8626 4.1476 -4.8195 20 6 2.3600 5.4371 -4.8587 21 6 2.6106 6.1173 -3.6821 22 6 2.3588 5.5097 -2.4650 23 35 2.6947 6.4425 -0.8548 24 1 -0.3634 0.4237 -0.9361 25 1 -0.3633 -1.0227 0.1011 26 1 -0.3632 0.5988 0.8352 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7989 -0.0510 2.9733 30 1 0.7915 1.7292 -1.6116 31 1 -0.5487 3.5519 -1.2857 32 1 0.0447 3.5402 0.3924 33 1 0.1267 5.0352 -0.5702 34 1 1.2281 2.5308 -3.5735 35 1 1.6672 3.6162 -5.7392 36 1 2.5527 5.9128 -5.8089 37 1 2.9988 7.1247 -3.7128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:20 Heat of formation + Delta-G solvation = 18.982461 kcal Electronic energy + Delta-G solvation = -18386.521683 eV Core-core repulsion = 15595.499004 eV Total energy + Delta-G solvation = -2791.022679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.33697 -36.68750 -33.72569 -32.11895 -31.58292 -29.97238 -28.98366 -28.18249 -26.10429 -23.50594 -22.76115 -21.92512 -20.06350 -19.55174 -16.61817 -16.17277 -15.45817 -15.00751 -14.62042 -14.22086 -13.80101 -13.31237 -13.26442 -13.19143 -12.80578 -12.50873 -12.07267 -11.88483 -11.65722 -11.20411 -11.12730 -10.87698 -10.79792 -10.67102 -10.61696 -10.47410 -9.93202 -9.84834 -9.68462 -9.54853 -9.08735 -8.59699 -8.37427 -8.32168 -7.26750 -5.94214 -3.97784 1.33577 1.55295 1.92111 3.37036 3.40449 3.44897 3.86275 4.47640 4.90267 4.99493 5.18214 5.27425 5.35932 5.51028 5.67295 5.74026 5.75841 5.95697 6.05225 6.15207 6.16823 6.22575 6.37394 6.41337 6.47326 6.51963 6.65518 6.81470 6.85980 7.06000 7.10126 7.18114 7.51382 7.78606 7.94312 8.28163 8.40193 8.75136 9.09954 9.67161 11.11112 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.005966 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.955722 B = 4691.914644 C = 5421.598931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.114 3.886 15 H 0.105 0.895 16 C -0.171 4.171 17 C -0.024 4.024 18 C -0.091 4.091 19 C -0.111 4.111 20 C -0.131 4.131 21 C -0.097 4.097 22 C -0.093 4.093 23 Br -0.055 7.055 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.259 0.741 30 H 0.317 0.683 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 10.815 -9.950 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.308 5.308 14 C 0.003 3.997 15 H 0.123 0.877 16 C -0.230 4.230 17 C -0.026 4.026 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.172 4.172 23 Br 0.030 6.970 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.635 11.060 -9.383 15.227 hybrid contribution 0.187 -0.156 0.276 0.368 sum -4.448 10.905 -9.106 14.887 Atomic orbital electron populations 1.21881 0.99630 0.99686 0.99500 1.21766 0.91174 1.00352 1.03111 1.19158 0.95409 0.89871 0.84137 0.97790 1.21165 0.91245 1.36457 1.04207 0.92175 1.24921 0.97935 0.95655 0.95851 1.69857 1.34692 1.39516 1.09589 0.86657 0.86030 0.78229 0.77092 1.20343 1.21481 1.20341 1.60790 1.35376 1.01124 1.33517 1.20570 0.96843 0.90159 0.92082 0.87683 1.22434 0.97288 1.01657 1.01635 1.20039 0.94342 0.91186 0.97061 1.21057 0.99083 1.00042 0.90784 1.21270 0.98573 0.94985 0.98070 1.21013 1.01215 0.95333 0.97444 1.20968 0.99825 0.99903 0.90953 1.21695 1.07560 0.96232 0.91737 1.96661 1.94872 1.74617 1.30831 0.94678 0.94442 0.93873 0.94069 0.88204 0.93074 0.86506 0.93133 0.91875 0.92540 0.84665 0.85950 0.85904 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.64 37.16 0.36 -2.44 16 2 C -0.13 -2.88 5.37 -26.74 -0.14 -3.02 16 3 C 0.22 5.33 1.84 -68.87 -0.13 5.20 16 4 H 0.00 0.12 7.29 -51.93 -0.38 -0.26 16 5 C -0.49 -13.44 8.47 -34.44 -0.29 -13.74 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.90 -25.33 11.29 55.43 0.63 -24.70 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.68 -13.73 5.01 -102.17 -0.51 -14.24 16 14 C 0.11 2.13 2.03 -68.86 -0.14 1.99 16 15 H 0.11 2.27 6.36 -51.93 -0.33 1.94 16 16 C -0.17 -2.79 9.13 37.16 0.34 -2.45 16 17 C -0.02 -0.40 5.06 -104.60 -0.53 -0.93 16 18 C -0.09 -1.37 9.32 -39.59 -0.37 -1.74 16 19 C -0.11 -1.40 10.05 -39.58 -0.40 -1.80 16 20 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 21 C -0.10 -1.29 9.79 -39.56 -0.39 -1.68 16 22 C -0.09 -1.45 6.22 -39.52 -0.25 -1.70 16 23 Br -0.06 -0.85 31.39 -68.01 -2.13 -2.99 16 24 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.32 5.79 5.77 -39.29 -0.23 5.56 16 31 H 0.05 0.74 8.04 -51.93 -0.42 0.33 16 32 H 0.06 1.09 7.61 -51.93 -0.40 0.69 16 33 H 0.06 0.86 7.65 -51.93 -0.40 0.46 16 34 H 0.14 2.00 6.94 -52.49 -0.36 1.64 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -28.06 317.76 -9.92 -37.98 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.24 Total: 5.27 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.43 Total: -22.81 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.11 Total: -38.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -2.13 Total: -2.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.06 -9.92 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.963 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds