Wall clock time and date at job start Tue Mar 31 2020 09:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00221 * 2 1 4 4 H 1.07998 * 119.99692 * 202.04813 * 3 2 1 5 5 C 1.38806 * 120.00145 * 22.03955 * 3 2 1 6 6 N 1.31619 * 120.00341 * 11.27510 * 5 3 2 7 7 Si 1.86798 * 120.00070 * 191.26789 * 5 3 2 8 8 H 1.48508 * 109.46960 * 90.00499 * 7 5 3 9 9 H 1.48499 * 109.47431 * 210.00138 * 7 5 3 10 10 H 1.48495 * 109.47171 * 330.00604 * 7 5 3 11 11 C 1.46500 * 119.99558 * 179.97438 * 2 1 3 12 12 N 1.46498 * 109.47373 * 270.00345 * 11 2 1 13 13 N 1.40275 * 126.63468 * 269.68610 * 12 11 2 14 14 C 1.29199 * 107.88955 * 179.81959 * 13 12 11 15 15 C 1.50697 * 125.34863 * 180.19255 * 14 13 12 16 16 C 1.50703 * 109.46981 * 90.32300 * 15 14 13 17 17 C 1.33392 * 125.20580 * 89.71758 * 16 15 14 18 18 C 1.38422 * 114.91921 * 179.86027 * 17 16 15 19 19 C 1.33389 * 114.92296 * 0.42882 * 18 17 16 20 20 S 1.75880 * 125.19986 * 270.02391 * 16 15 14 21 21 O 1.34777 * 109.30332 * 0.45188 * 14 13 12 22 22 C 1.34416 * 108.83479 * 359.70782 * 21 14 13 23 23 S 1.71194 * 126.37939 * 180.02562 * 22 21 14 24 24 H 1.08998 * 109.47206 * 274.64535 * 1 2 3 25 25 H 1.08999 * 109.46556 * 34.63801 * 1 2 3 26 26 H 1.08992 * 109.47377 * 154.63711 * 1 2 3 27 27 H 0.96993 * 120.00835 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.46999 * 149.99931 * 11 2 1 29 29 H 1.09001 * 109.46884 * 30.00585 * 11 2 1 30 30 H 1.09003 * 109.47090 * 210.31882 * 15 14 13 31 31 H 1.09000 * 109.47516 * 330.32175 * 15 14 13 32 32 H 1.08004 * 122.53418 * 0.02562 * 17 16 15 33 33 H 1.08001 * 122.53275 * 180.19980 * 18 17 16 34 34 H 1.07998 * 125.20193 * 179.78957 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1705 1.2200 -0.3511 5 6 1.5319 2.3441 0.4511 6 7 0.3786 2.2722 1.0813 7 14 2.3372 4.0049 0.1639 8 1 1.8760 4.5609 -1.1336 9 1 1.9629 4.9329 1.2611 10 1 3.8128 3.8412 0.1358 11 6 2.1974 -1.2688 0.0006 12 7 2.4415 -1.6912 1.3819 13 7 3.5588 -1.3748 2.1689 14 6 3.4002 -1.9301 3.3247 15 6 4.3686 -1.8396 4.4757 16 6 4.0212 -0.6493 5.3321 17 6 3.1818 -0.6664 6.3687 18 6 3.0202 0.5503 7.0086 19 6 3.7215 1.5576 6.4862 20 16 4.6546 0.9768 5.1130 21 8 2.2352 -2.6077 3.3373 22 6 1.6374 -2.4653 2.1419 23 16 0.1358 -3.1392 1.6708 24 1 -0.3633 0.0832 1.0243 25 1 -0.3632 0.8455 -0.5841 26 1 -0.3634 -0.9285 -0.4402 27 1 -0.0530 3.0814 1.3968 28 1 3.1498 -1.1387 -0.5133 29 1 1.6083 -2.0286 -0.5130 30 1 4.3072 -2.7484 5.0746 31 1 5.3818 -1.7264 4.0901 32 1 2.6692 -1.5625 6.6863 33 1 2.3724 0.6754 7.8637 34 1 3.7172 2.5741 6.8509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066793473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:25 Heat of formation + Delta-G solvation = 115.813649 kcal Electronic energy + Delta-G solvation = -21240.845635 eV Core-core repulsion = 18009.705792 eV Total energy + Delta-G solvation = -3231.139843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.050 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.97725 -37.99889 -36.70897 -34.95984 -33.96665 -31.80345 -30.51645 -27.45332 -26.70084 -26.06792 -23.70296 -23.59002 -21.82904 -21.44706 -19.31063 -18.10524 -17.51249 -17.16174 -16.82841 -16.42225 -15.56753 -15.28642 -15.00116 -14.61205 -13.98894 -13.65782 -13.46499 -13.19103 -12.71709 -12.57026 -12.26433 -11.88320 -11.81899 -11.60203 -11.55565 -11.12019 -11.07250 -10.92709 -10.75198 -10.61870 -10.40598 -10.35116 -10.16160 -8.99018 -8.80852 -8.43795 -7.55771 -7.26507 -7.19840 -6.19981 -3.66593 0.84566 1.40068 1.57952 1.71824 1.88811 1.98355 2.53506 2.78809 3.16493 3.21567 3.23501 3.29657 4.12856 4.26984 4.53950 4.91780 5.03745 5.05708 5.06361 5.12190 5.22242 5.46477 5.53133 5.70472 5.95957 5.99739 6.04566 6.21146 6.40731 6.67438 6.78533 7.15310 7.42981 7.58534 7.71199 7.88424 8.70850 9.27078 9.72504 10.79205 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.007074 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.734890 B = 3957.122790 C = 5919.611601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.529 5.529 3 C -0.278 4.278 4 H 0.084 0.916 5 C 0.020 3.980 6 N -0.874 5.874 7 Si 0.917 3.083 8 H -0.279 1.279 9 H -0.286 1.286 10 H -0.272 1.272 11 C 0.327 3.673 12 N -0.351 5.351 13 N -0.260 5.260 14 C 0.204 3.796 15 C 0.053 3.947 16 C -0.198 4.198 17 C -0.116 4.116 18 C -0.140 4.140 19 C -0.209 4.209 20 S 0.135 5.865 21 O -0.229 6.229 22 C 0.411 3.589 23 S -0.549 6.549 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.213 -3.682 8.861 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.242 5.242 3 C -0.409 4.409 4 H 0.102 0.898 5 C -0.184 4.184 6 N -0.514 5.514 7 Si 0.745 3.255 8 H -0.206 1.206 9 H -0.212 1.212 10 H -0.197 1.197 11 C 0.121 3.879 12 N -0.161 5.161 13 N -0.089 5.089 14 C -0.025 4.025 15 C 0.012 3.988 16 C -0.317 4.317 17 C -0.148 4.148 18 C -0.170 4.170 19 C -0.345 4.345 20 S 0.401 5.599 21 O -0.118 6.118 22 C 0.109 3.891 23 S -0.420 6.420 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.617 -2.650 6.930 12.952 hybrid contribution -0.548 0.485 1.826 1.967 sum 10.069 -2.165 8.756 13.518 Atomic orbital electron populations 1.21230 0.80098 0.97490 1.01009 1.45390 1.03989 1.01305 1.73559 1.19514 0.99019 0.84228 1.38124 0.89786 1.25328 0.97015 0.99704 0.96311 1.70125 1.16543 1.28615 1.36069 0.86063 0.79290 0.82292 0.77865 1.20553 1.21154 1.19681 1.23152 0.97750 0.88518 0.78503 1.56596 1.10241 1.34380 1.14839 1.77314 1.11130 1.18548 1.01872 1.26597 0.87099 0.92556 0.96217 1.18523 0.94859 0.96695 0.88725 1.24045 1.07122 0.98133 1.02399 1.20184 0.98864 0.99585 0.96145 1.20125 1.02204 0.92082 1.02627 1.25740 1.04303 1.03571 1.00862 1.84499 1.45006 1.00986 1.29455 1.85258 1.30433 1.60633 1.35468 1.27867 0.94512 0.86740 0.79997 1.93143 1.05014 1.63886 1.79966 0.93848 0.92678 0.95583 0.92582 0.88778 0.87815 0.86269 0.86157 0.83977 0.84176 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.57 9.01 59.85 0.54 4.11 16 2 N -0.53 -12.71 3.17 -184.86 -0.59 -13.29 16 3 C -0.28 -7.08 9.68 -15.06 -0.15 -7.22 16 4 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 5 C 0.02 0.53 5.13 -17.43 -0.09 0.44 16 6 N -0.87 -24.11 10.56 55.49 0.59 -23.52 16 7 Si 0.92 20.36 29.57 -169.99 -5.03 15.33 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 11 C 0.33 6.69 6.84 -63.75 -0.44 6.26 16 12 N -0.35 -7.34 3.88 -65.26 -0.25 -7.60 16 13 N -0.26 -4.99 12.55 32.46 0.41 -4.58 16 14 C 0.20 3.39 7.60 -13.39 -0.10 3.29 16 15 C 0.05 0.60 6.34 -29.03 -0.18 0.42 16 16 C -0.20 -2.56 5.75 -36.00 -0.21 -2.76 16 17 C -0.12 -1.44 10.05 -41.21 -0.41 -1.86 16 18 C -0.14 -1.68 10.18 -41.21 -0.42 -2.10 16 19 C -0.21 -2.56 11.23 29.04 0.33 -2.23 16 20 S 0.14 1.82 23.33 -107.50 -2.51 -0.69 16 21 O -0.23 -4.40 10.72 4.09 0.04 -4.36 16 22 C 0.41 8.87 8.39 54.17 0.45 9.32 16 23 S -0.55 -12.72 30.48 -107.50 -3.28 -16.00 16 24 H 0.04 1.20 7.40 -51.93 -0.38 0.82 16 25 H 0.05 1.40 7.19 -51.93 -0.37 1.03 16 26 H 0.03 0.58 7.84 -51.93 -0.41 0.18 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.09 1.75 8.03 -51.93 -0.42 1.33 16 29 H 0.10 2.00 7.45 -51.93 -0.39 1.61 16 30 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -31.61 330.28 -9.94 -41.55 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.63 Total: 0.51 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.68 Total: 7.67 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.15 Total: -48.99 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: 0.04 Total: -4.36 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Atomic # 16 Polarization: -10.90 SS G_CDS: -5.78 Total: -16.69 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.61 -9.94 -41.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066793473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.366 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds