Wall clock time and date at job start Tue Mar 31 2020 09:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00221 * 2 1 4 4 H 1.07998 * 119.99692 * 202.04813 * 3 2 1 5 5 C 1.38806 * 120.00145 * 22.03955 * 3 2 1 6 6 N 1.31619 * 120.00341 * 11.27510 * 5 3 2 7 7 Si 1.86798 * 120.00070 * 191.26789 * 5 3 2 8 8 H 1.48508 * 109.46960 * 90.00499 * 7 5 3 9 9 H 1.48499 * 109.47431 * 210.00138 * 7 5 3 10 10 H 1.48495 * 109.47171 * 330.00604 * 7 5 3 11 11 C 1.46500 * 119.99558 * 179.97438 * 2 1 3 12 12 N 1.46498 * 109.47373 * 270.00345 * 11 2 1 13 13 N 1.40275 * 126.63468 * 269.68610 * 12 11 2 14 14 C 1.29199 * 107.88955 * 179.81959 * 13 12 11 15 15 C 1.50697 * 125.34863 * 180.19255 * 14 13 12 16 16 C 1.50703 * 109.46981 * 90.32300 * 15 14 13 17 17 C 1.33392 * 125.20580 * 89.71758 * 16 15 14 18 18 C 1.38422 * 114.91921 * 179.86027 * 17 16 15 19 19 C 1.33389 * 114.92296 * 0.42882 * 18 17 16 20 20 S 1.75880 * 125.19986 * 270.02391 * 16 15 14 21 21 O 1.34777 * 109.30332 * 0.45188 * 14 13 12 22 22 C 1.34416 * 108.83479 * 359.70782 * 21 14 13 23 23 S 1.71194 * 126.37939 * 180.02562 * 22 21 14 24 24 H 1.08998 * 109.47206 * 274.64535 * 1 2 3 25 25 H 1.08999 * 109.46556 * 34.63801 * 1 2 3 26 26 H 1.08992 * 109.47377 * 154.63711 * 1 2 3 27 27 H 0.96993 * 120.00835 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.46999 * 149.99931 * 11 2 1 29 29 H 1.09001 * 109.46884 * 30.00585 * 11 2 1 30 30 H 1.09003 * 109.47090 * 210.31882 * 15 14 13 31 31 H 1.09000 * 109.47516 * 330.32175 * 15 14 13 32 32 H 1.08004 * 122.53418 * 0.02562 * 17 16 15 33 33 H 1.08001 * 122.53275 * 180.19980 * 18 17 16 34 34 H 1.07998 * 125.20193 * 179.78957 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1705 1.2200 -0.3511 5 6 1.5319 2.3441 0.4511 6 7 0.3786 2.2722 1.0813 7 14 2.3372 4.0049 0.1639 8 1 1.8760 4.5609 -1.1336 9 1 1.9629 4.9329 1.2611 10 1 3.8128 3.8412 0.1358 11 6 2.1974 -1.2688 0.0006 12 7 2.4415 -1.6912 1.3819 13 7 3.5588 -1.3748 2.1689 14 6 3.4002 -1.9301 3.3247 15 6 4.3686 -1.8396 4.4757 16 6 4.0212 -0.6493 5.3321 17 6 3.1818 -0.6664 6.3687 18 6 3.0202 0.5503 7.0086 19 6 3.7215 1.5576 6.4862 20 16 4.6546 0.9768 5.1130 21 8 2.2352 -2.6077 3.3373 22 6 1.6374 -2.4653 2.1419 23 16 0.1358 -3.1392 1.6708 24 1 -0.3633 0.0832 1.0243 25 1 -0.3632 0.8455 -0.5841 26 1 -0.3634 -0.9285 -0.4402 27 1 -0.0530 3.0814 1.3968 28 1 3.1498 -1.1387 -0.5133 29 1 1.6083 -2.0286 -0.5130 30 1 4.3072 -2.7484 5.0746 31 1 5.3818 -1.7264 4.0901 32 1 2.6692 -1.5625 6.6863 33 1 2.3724 0.6754 7.8637 34 1 3.7172 2.5741 6.8509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066793473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:24 Heat of formation + Delta-G solvation = 95.621341 kcal Electronic energy + Delta-G solvation = -21241.721239 eV Core-core repulsion = 18009.705792 eV Total energy + Delta-G solvation = -3232.015448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.050 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.61901 -38.96142 -38.45982 -36.68567 -35.27777 -33.51408 -31.98614 -28.92838 -28.25649 -27.78252 -25.44434 -24.69693 -23.34248 -23.09723 -20.27967 -19.75181 -19.09052 -18.73127 -18.40476 -17.86682 -17.08659 -16.65394 -16.36257 -16.09918 -15.74056 -15.39786 -14.49462 -14.20123 -14.16159 -13.68470 -13.57472 -13.50474 -13.37796 -13.33231 -12.86692 -12.83933 -12.66294 -12.58764 -12.43516 -12.25716 -12.09143 -11.91010 -11.68241 -10.91191 -9.78818 -9.45739 -9.44822 -9.09860 -9.02643 -8.10437 -5.64708 -0.36010 -0.15975 0.01845 0.42083 0.65851 1.01871 1.07566 1.41100 1.43452 1.50778 1.59142 1.85550 2.32465 2.84374 3.14413 3.30233 3.51871 3.57909 4.03008 4.12174 4.18093 4.30064 4.36495 4.53955 4.65110 4.68198 4.76912 4.99484 5.09637 5.20372 5.27018 5.46949 5.49128 5.55778 5.97972 6.11862 6.79388 7.41645 7.84325 8.89485 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.007074 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.734890 B = 3957.122790 C = 5919.611601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.553 5.553 3 C -0.285 4.285 4 H 0.090 0.910 5 C -0.030 4.030 6 N -0.918 5.918 7 Si 0.976 3.024 8 H -0.276 1.276 9 H -0.294 1.294 10 H -0.261 1.261 11 C 0.338 3.662 12 N -0.355 5.355 13 N -0.281 5.281 14 C 0.229 3.771 15 C 0.053 3.947 16 C -0.209 4.209 17 C -0.119 4.119 18 C -0.149 4.149 19 C -0.211 4.211 20 S 0.092 5.908 21 O -0.225 6.225 22 C 0.413 3.587 23 S -0.583 6.583 24 H 0.003 0.997 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.257 0.743 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.130 -4.605 10.002 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.269 5.269 3 C -0.415 4.415 4 H 0.108 0.892 5 C -0.229 4.229 6 N -0.560 5.560 7 Si 0.802 3.198 8 H -0.202 1.202 9 H -0.221 1.221 10 H -0.185 1.185 11 C 0.133 3.867 12 N -0.163 5.163 13 N -0.108 5.108 14 C 0.001 3.999 15 C 0.013 3.987 16 C -0.328 4.328 17 C -0.151 4.151 18 C -0.179 4.179 19 C -0.347 4.347 20 S 0.357 5.643 21 O -0.114 6.114 22 C 0.109 3.891 23 S -0.455 6.455 24 H 0.022 0.978 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 12.598 -3.583 8.073 15.386 hybrid contribution -0.986 0.552 1.669 2.015 sum 11.612 -3.031 9.742 15.457 Atomic orbital electron populations 1.20786 0.80991 0.97151 0.98169 1.45279 1.03505 1.01973 1.76185 1.19728 0.99080 0.85024 1.37706 0.89234 1.26036 0.97591 1.02725 0.96579 1.70286 1.18340 1.28650 1.38686 0.85154 0.78885 0.78490 0.77291 1.20242 1.22051 1.18522 1.22990 0.98982 0.87837 0.76912 1.55383 1.11061 1.34362 1.15452 1.77343 1.10306 1.20208 1.02923 1.27850 0.85985 0.89473 0.96568 1.19052 0.94369 0.98015 0.87268 1.24173 1.07779 0.97791 1.03026 1.20554 0.98252 1.00469 0.95779 1.20488 1.02235 0.91892 1.03243 1.26042 1.03816 1.04695 1.00153 1.84632 1.46221 1.02568 1.30905 1.85277 1.31255 1.60781 1.34040 1.27380 0.94014 0.86961 0.80743 1.93206 1.06353 1.65140 1.80817 0.97797 0.94630 0.94214 0.93410 0.86444 0.86584 0.82061 0.83390 0.82077 0.81966 0.80065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.72 9.01 127.77 1.15 9.87 16 2 N -0.55 -26.59 3.17 -738.79 -2.34 -28.93 16 3 C -0.29 -14.53 9.68 84.03 0.81 -13.71 16 4 H 0.09 4.34 7.84 -2.91 -0.02 4.32 16 5 C -0.03 -1.60 5.13 84.86 0.44 -1.16 16 6 N -0.92 -52.30 10.56 21.65 0.23 -52.07 16 7 Si 0.98 42.28 29.57 68.60 2.03 44.31 16 8 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 9 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 C 0.34 13.41 6.84 170.96 1.17 14.58 16 12 N -0.36 -14.31 3.88 -472.48 -1.83 -16.14 16 13 N -0.28 -10.11 12.55 -166.07 -2.08 -12.19 16 14 C 0.23 6.92 7.60 88.49 0.67 7.59 16 15 C 0.05 0.99 6.34 29.10 0.18 1.18 16 16 C -0.21 -4.80 5.75 24.59 0.14 -4.66 16 17 C -0.12 -2.59 10.05 21.22 0.21 -2.38 16 18 C -0.15 -3.19 10.18 21.22 0.22 -2.98 16 19 C -0.21 -4.81 11.23 66.72 0.75 -4.06 16 20 S 0.09 2.34 23.33 -56.49 -1.32 1.02 16 21 O -0.23 -8.09 10.72 -8.28 -0.09 -8.18 16 22 C 0.41 17.24 8.39 129.75 1.09 18.33 16 23 S -0.58 -26.69 30.48 -56.49 -1.72 -28.41 16 24 H 0.00 0.20 7.40 -2.39 -0.02 0.18 16 25 H 0.03 1.87 7.19 -2.39 -0.02 1.85 16 26 H 0.04 1.82 7.84 -2.39 -0.02 1.80 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.12 4.11 8.03 -2.39 -0.02 4.09 16 29 H 0.12 4.31 7.45 -2.39 -0.02 4.29 16 30 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 34 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -69.58 330.28 0.83 -68.75 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.13 Total: 9.25 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 6.83 Total: 22.60 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -6.03 Total: -109.33 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.09 Total: -8.18 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -24.36 SS G_CDS: -3.04 Total: -27.40 kcal Total: -69.58 0.83 -68.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066793473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.368 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds