Wall clock time and date at job start Tue Mar 31 2020 10:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46867 * 2 1 4 4 C 1.52999 * 109.47131 * 239.99919 * 2 1 3 5 5 C 1.50701 * 109.47056 * 174.99860 * 4 2 1 6 6 C 1.38240 * 119.99241 * 270.25393 * 5 4 2 7 7 C 1.38217 * 120.01108 * 180.29618 * 6 5 4 8 8 C 1.38319 * 119.98897 * 359.47373 * 7 6 5 9 9 Br 1.89096 * 120.01005 * 180.27289 * 8 7 6 10 10 C 1.38331 * 119.97902 * 0.25553 * 8 7 6 11 11 C 1.38215 * 119.98895 * 359.97438 * 10 8 7 12 12 N 1.46902 * 109.47225 * 120.00260 * 2 1 3 13 13 C 1.46901 * 110.99807 * 276.89926 * 12 2 1 14 14 H 1.09004 * 109.47165 * 347.74399 * 13 12 2 15 15 C 1.53005 * 109.47342 * 107.74615 * 13 12 2 16 16 C 1.50703 * 109.46929 * 227.74776 * 13 12 2 17 17 H 1.08000 * 120.00080 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99774 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00149 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99729 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46716 * 89.99886 * 20 18 16 22 22 H 1.48495 * 109.47091 * 209.99677 * 20 18 16 23 23 H 1.48497 * 109.47051 * 330.00101 * 20 18 16 24 24 H 1.09004 * 109.46840 * 183.60825 * 1 2 3 25 25 H 1.09004 * 109.47162 * 303.60643 * 1 2 3 26 26 H 1.08999 * 109.47362 * 63.60439 * 1 2 3 27 27 H 1.09002 * 109.47037 * 54.99771 * 4 2 1 28 28 H 1.08998 * 109.47668 * 295.00286 * 4 2 1 29 29 H 1.08005 * 119.99675 * 0.02683 * 6 5 4 30 30 H 1.08002 * 120.00319 * 179.74915 * 7 6 5 31 31 H 1.08005 * 120.00503 * 180.02562 * 10 8 7 32 32 H 1.08008 * 119.99295 * 180.02562 * 11 10 8 33 33 H 1.00892 * 110.99951 * 152.94248 * 12 2 1 34 34 H 1.09000 * 109.46980 * 66.81047 * 15 13 12 35 35 H 1.08996 * 109.47190 * 186.80748 * 15 13 12 36 36 H 1.09000 * 109.47150 * 306.80888 * 15 13 12 37 37 H 0.96998 * 119.99851 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 6 4.1322 0.4522 -1.9638 7 6 5.5097 0.5469 -2.0275 8 6 6.2976 -0.4204 -1.4303 9 35 8.1821 -0.2873 -1.5105 10 6 5.7065 -1.4851 -0.7741 11 6 4.3289 -1.5815 -0.7150 12 7 2.0197 -0.6926 1.1994 13 6 2.0399 0.2109 2.3576 14 1 1.8957 1.2374 2.0202 15 6 0.9156 -0.1715 3.3224 16 6 3.3672 0.0953 3.0618 17 1 4.1203 -0.5819 2.6867 18 6 3.6198 0.8533 4.1855 19 7 2.7022 1.6769 4.6430 20 14 5.2648 0.7095 5.0587 21 1 6.2176 1.6933 4.4845 22 1 5.0823 0.9842 6.5066 23 1 5.8022 -0.6631 4.8791 24 1 -0.3633 -1.0257 0.0647 25 1 -0.3634 0.5688 0.8559 26 1 -0.3634 0.4569 -0.9205 27 1 1.6053 -0.2618 -2.1370 28 1 1.7517 -1.7715 -1.2057 29 1 3.5170 1.2097 -2.4265 30 1 5.9707 1.3785 -2.5397 31 1 6.3213 -2.2405 -0.3073 32 1 3.8673 -2.4125 -0.2023 33 1 2.9311 -1.0942 1.0382 34 1 1.1236 -1.1511 3.7527 35 1 0.8530 0.5695 4.1193 36 1 -0.0307 -0.2053 2.7825 37 1 2.8800 2.2104 5.4333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068611925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:12 Heat of formation + Delta-G solvation = 11.866620 kcal Electronic energy + Delta-G solvation = -18219.603484 eV Core-core repulsion = 15428.272240 eV Total energy + Delta-G solvation = -2791.331245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.46979 -36.75103 -33.85256 -32.26459 -31.00580 -30.74754 -29.38005 -27.35202 -25.76012 -24.98187 -22.76158 -21.42326 -20.19811 -19.60290 -16.64590 -16.51141 -15.50848 -15.11420 -14.74616 -14.56141 -13.82071 -13.68295 -13.41061 -13.06111 -12.61881 -12.28259 -11.86346 -11.75209 -11.53223 -11.41421 -11.10500 -11.04079 -10.88332 -10.69562 -10.60341 -10.48797 -10.24074 -10.12350 -9.98719 -9.74742 -8.91890 -8.81175 -8.43542 -8.37400 -7.27407 -6.01007 -4.07943 1.20237 1.42837 1.69961 3.29892 3.36448 3.39902 3.72171 4.41560 4.82318 4.91567 4.99467 5.13439 5.31196 5.43527 5.46424 5.49561 5.67595 5.78038 5.92904 6.01169 6.07562 6.17383 6.29275 6.32363 6.37903 6.56444 6.70079 6.77899 6.94120 6.94993 7.21142 7.36517 7.53958 7.79220 8.02366 8.22078 8.39728 8.71217 9.05023 9.58279 11.04593 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.005502 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.233443 B = 5087.629346 C = 6974.381985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.089 3.911 3 H 0.038 0.962 4 C -0.086 4.086 5 C -0.058 4.058 6 C -0.112 4.112 7 C -0.090 4.090 8 C -0.095 4.095 9 Br -0.064 7.064 10 C -0.085 4.085 11 C -0.106 4.106 12 N -0.689 5.689 13 C 0.212 3.788 14 H 0.011 0.989 15 C -0.119 4.119 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.066 3.934 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.333 0.667 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.009 0.991 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 -3.977 -15.373 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.056 0.944 4 C -0.124 4.124 5 C -0.058 4.058 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.174 4.174 9 Br 0.021 6.979 10 C -0.104 4.104 11 C -0.124 4.124 12 N -0.323 5.323 13 C 0.104 3.896 14 H 0.028 0.972 15 C -0.178 4.178 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.465 -4.059 -15.086 16.551 hybrid contribution 1.351 0.620 0.514 1.573 sum 6.816 -3.439 -14.572 16.451 Atomic orbital electron populations 1.21806 0.95233 1.01836 1.00495 1.21494 0.95224 0.95782 0.89689 0.94424 1.20926 0.89968 1.02537 0.98935 1.20114 0.96469 0.93949 0.95299 1.21017 0.93940 0.98012 1.00137 1.21014 0.93641 0.97573 0.98759 1.21679 0.89629 1.00085 1.06027 1.96656 1.04739 1.98474 1.98055 1.21087 0.95269 0.96772 0.97316 1.21141 0.92737 0.99689 0.98875 1.60957 1.31753 1.36106 1.03434 1.19150 0.94438 0.89574 0.86443 0.97159 1.21714 0.95512 1.00539 0.99999 1.21479 0.99546 1.23805 1.11708 0.92642 1.24888 0.96694 0.95093 0.96961 1.69907 1.33204 1.25677 1.23853 0.86636 0.84251 0.78536 0.78884 1.20707 1.21165 1.19820 0.92463 0.92325 0.93795 0.90833 0.90154 0.85412 0.85405 0.85161 0.84632 0.84744 0.95300 0.90906 0.97150 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.19 37.16 0.34 -1.79 16 2 C 0.09 1.54 2.55 -67.71 -0.17 1.37 16 3 H 0.04 0.73 7.44 -51.93 -0.39 0.35 16 4 C -0.09 -1.18 4.99 -27.88 -0.14 -1.31 16 5 C -0.06 -0.83 4.83 -104.62 -0.51 -1.34 16 6 C -0.11 -1.52 9.70 -39.59 -0.38 -1.91 16 7 C -0.09 -1.22 9.79 -39.56 -0.39 -1.61 16 8 C -0.10 -1.35 6.22 -39.52 -0.25 -1.60 16 9 Br -0.06 -0.83 33.70 -68.01 -2.29 -3.12 16 10 C -0.08 -1.21 9.79 -39.56 -0.39 -1.60 16 11 C -0.11 -1.53 8.02 -39.59 -0.32 -1.85 16 12 N -0.69 -14.30 6.22 -100.95 -0.63 -14.93 16 13 C 0.21 5.32 2.55 -68.86 -0.18 5.15 16 14 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 15 C -0.12 -2.96 9.19 37.16 0.34 -2.62 16 16 C -0.53 -14.47 8.60 -34.44 -0.30 -14.77 16 17 H 0.06 1.51 7.36 -52.49 -0.39 1.13 16 18 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 19 N -0.89 -25.55 11.40 55.43 0.63 -24.92 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.03 7.01 -51.93 -0.36 0.66 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.14 1.85 7.57 -52.48 -0.40 1.46 16 33 H 0.33 6.81 4.64 -39.30 -0.18 6.63 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.97 6.28 -51.93 -0.33 1.64 16 36 H 0.01 0.22 6.89 -51.93 -0.36 -0.14 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -28.82 320.36 -10.19 -39.01 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.28 Total: 4.69 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.42 Total: -22.14 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.00 Total: -39.85 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -2.29 Total: -3.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.82 -10.19 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068611925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.873 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds