Wall clock time and date at job start Tue Mar 31 2020 09:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99645 * 2 1 4 4 H 1.48493 * 109.47188 * 240.00090 * 3 2 1 5 5 H 1.48504 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47068 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00541 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99906 * 359.97438 * 7 2 1 10 10 N 1.46491 * 109.47236 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00262 * 85.00079 * 10 9 7 12 12 C 1.50693 * 109.47423 * 85.00051 * 11 10 9 13 13 C 1.34512 * 125.79339 * 89.99938 * 12 11 10 14 14 C 1.41376 * 106.84688 * 179.79418 * 13 12 11 15 15 C 1.34517 * 106.83881 * 0.37683 * 14 13 12 16 16 O 1.34305 * 125.78769 * 270.03097 * 12 11 10 17 17 S 1.65603 * 119.99952 * 265.00103 * 10 9 7 18 18 O 1.42101 * 106.40204 * 23.53986 * 17 10 9 19 19 O 1.42101 * 106.40645 * 156.45893 * 17 10 9 20 20 C 1.76208 * 107.21871 * 269.99922 * 17 10 9 21 21 C 1.34670 * 125.98828 * 269.72038 * 20 17 10 22 22 N 1.36881 * 106.81659 * 179.84950 * 21 20 17 23 23 H 0.96992 * 126.39898 * 180.19073 * 22 21 20 24 24 C 1.35042 * 107.20186 * 0.40377 * 22 21 20 25 25 N 1.30497 * 108.70448 * 359.74731 * 24 22 21 26 26 H 0.96996 * 120.00283 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46956 * 59.99759 * 9 7 2 28 28 H 1.09001 * 109.46853 * 300.00171 * 9 7 2 29 29 H 1.09000 * 109.46893 * 324.99741 * 11 10 9 30 30 H 1.09004 * 109.47276 * 205.00436 * 11 10 9 31 31 H 1.08006 * 126.57585 * 0.04182 * 13 12 11 32 32 H 1.07998 * 126.58562 * 180.23597 * 14 13 12 33 33 H 1.08002 * 125.79423 * 179.89440 * 15 14 13 34 34 H 1.08001 * 126.59006 * 359.94963 * 21 20 17 35 35 H 1.08004 * 125.64694 * 179.76999 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7633 -4.0975 1.2633 12 6 1.8182 -5.0950 1.8818 13 6 1.8284 -6.4236 1.6715 14 6 0.7809 -6.9695 2.4483 15 6 0.1877 -5.9409 3.0804 16 8 0.8222 -4.8083 2.7360 17 16 2.6463 -4.3231 -1.4292 18 8 2.4212 -3.3556 -2.4453 19 8 3.9106 -4.9300 -1.2005 20 6 1.5115 -5.6365 -1.7326 21 6 1.6538 -6.9139 -1.3306 22 7 0.5505 -7.5933 -1.7723 23 1 0.3617 -8.5349 -1.6362 24 6 -0.2236 -6.7087 -2.4369 25 7 0.3574 -5.5405 -2.4091 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8897 29 1 2.9027 -3.2582 1.9447 30 1 3.7244 -4.5760 1.0750 31 1 2.5092 -6.9692 1.0347 32 1 0.5077 -8.0120 2.5187 33 1 -0.6531 -6.0139 3.7543 34 1 2.4788 -7.3233 -0.7666 35 1 -1.1675 -6.9311 -2.9125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070417078.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:59 Heat of formation + Delta-G solvation = 14.941126 kcal Electronic energy + Delta-G solvation = -24439.784616 eV Core-core repulsion = 20761.517740 eV Total energy + Delta-G solvation = -3678.266875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.32095 -42.00694 -36.58554 -35.88266 -35.09329 -32.89344 -32.63884 -32.43323 -30.13603 -29.71284 -27.09318 -24.98581 -22.46573 -22.41501 -21.85230 -21.47284 -20.32245 -19.24764 -18.01511 -17.33500 -16.74544 -16.29555 -15.86886 -15.60983 -15.23722 -15.02773 -14.61434 -14.37239 -14.10367 -14.07166 -13.41101 -13.00601 -12.60577 -12.51582 -12.24433 -12.02462 -11.49680 -11.44846 -11.09687 -11.04444 -10.97203 -10.68668 -10.46706 -10.29470 -10.03849 -10.00399 -9.78140 -9.73244 -8.91891 -8.37053 -8.31048 -8.14522 -5.96208 -4.00501 1.02180 1.71230 1.96277 2.73143 2.82047 2.97438 3.25997 3.40969 3.44645 3.49114 3.84839 4.40982 4.49461 4.53577 4.85657 4.89603 4.96522 5.16154 5.20422 5.36920 5.44004 5.52466 5.72393 5.90454 5.95883 6.01116 6.22634 6.28212 6.37868 6.68381 7.14601 7.29118 7.39793 7.48080 7.62966 7.85275 7.99472 8.28066 9.00674 9.63733 11.12657 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.006265 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.723124 B = 4468.202176 C = 5389.169369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.256 3.744 10 N -0.971 5.971 11 C 0.191 3.809 12 C -0.006 4.006 13 C -0.224 4.224 14 C -0.219 4.219 15 C -0.044 4.044 16 O -0.160 6.160 17 S 2.713 3.287 18 O -0.924 6.924 19 O -0.977 6.977 20 C -0.550 4.550 21 C 0.065 3.935 22 N -0.564 5.564 23 H 0.421 0.579 24 C 0.178 3.822 25 N -0.405 5.405 26 H 0.263 0.737 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.197 0.803 34 H 0.190 0.810 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -19.050 3.080 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.134 3.866 10 N -0.809 5.809 11 C 0.064 3.936 12 C -0.059 4.059 13 C -0.244 4.244 14 C -0.238 4.238 15 C -0.112 4.112 16 O -0.054 6.054 17 S 2.797 3.203 18 O -0.914 6.914 19 O -0.967 6.967 20 C -0.759 4.759 21 C -0.077 4.077 22 N -0.166 5.166 23 H 0.260 0.740 24 C -0.109 4.109 25 N -0.123 5.123 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.213 0.787 34 H 0.207 0.793 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.154 -17.594 2.242 17.737 hybrid contribution -0.354 -1.245 0.610 1.431 sum -0.200 -18.839 2.853 19.055 Atomic orbital electron populations 1.69930 1.06002 1.27105 1.50179 1.24915 0.94860 0.99174 0.94931 0.86580 0.79566 0.82667 0.78750 1.19930 1.21278 1.20205 1.21416 0.93584 0.90473 1.51440 0.91968 1.19190 0.86928 0.81385 0.99070 1.57629 1.60202 1.44613 1.18432 1.19784 0.91624 0.95693 0.86472 1.23474 0.92129 0.95725 0.94544 1.21604 1.03000 0.93843 1.05928 1.21654 0.99702 0.99782 1.02659 1.23992 1.00254 0.83335 1.03641 1.84144 1.37195 1.34272 1.49777 1.01636 0.72699 0.72472 0.73472 1.93606 1.85185 1.57124 1.55466 1.93504 1.37662 1.79331 1.86172 1.33975 1.13246 1.14060 1.14643 1.22712 0.92274 0.92326 1.00354 1.43598 1.17789 1.12808 1.42357 0.74034 1.25414 0.99606 0.85177 1.00720 1.70383 1.04394 1.22233 1.15240 0.92689 0.93483 0.94459 0.87279 0.86684 0.83993 0.84174 0.78672 0.79334 0.76931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.99 9.38 -34.44 -0.32 -15.31 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.26 6.64 5.10 -5.20 -0.03 6.61 16 10 N -0.97 -20.61 2.75 -116.95 -0.32 -20.93 16 11 C 0.19 3.32 6.21 -5.20 -0.03 3.29 16 12 C -0.01 -0.09 6.90 -35.63 -0.25 -0.34 16 13 C -0.22 -3.02 9.49 -39.71 -0.38 -3.40 16 14 C -0.22 -2.64 10.91 -39.70 -0.43 -3.07 16 15 C -0.04 -0.57 12.09 29.42 0.36 -0.21 16 16 O -0.16 -2.70 10.65 5.68 0.06 -2.64 16 17 S 2.71 56.65 5.80 -107.50 -0.62 56.03 16 18 O -0.92 -23.65 16.99 -57.17 -0.97 -24.62 16 19 O -0.98 -19.29 16.39 -57.17 -0.94 -20.22 16 20 C -0.55 -9.79 7.13 -17.81 -0.13 -9.92 16 21 C 0.06 0.84 10.07 -16.56 -0.17 0.67 16 22 N -0.56 -5.52 6.15 -14.03 -0.09 -5.61 16 23 H 0.42 2.12 8.96 -40.82 -0.37 1.75 16 24 C 0.18 2.21 13.04 -90.38 -1.18 1.03 16 25 N -0.41 -7.43 11.25 -13.86 -0.16 -7.59 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.05 1.35 7.61 -51.93 -0.40 0.95 16 28 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 29 H 0.11 1.89 8.11 -51.93 -0.42 1.47 16 30 H 0.12 1.70 6.92 -51.93 -0.36 1.35 16 31 H 0.14 1.59 5.93 -52.48 -0.31 1.28 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.19 1.89 6.36 -52.49 -0.33 1.55 16 35 H 0.21 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -38.28 322.21 -8.54 -46.81 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.42 Total: 1.77 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.65 Total: -18.90 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.17 Total: -60.13 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -1.85 Total: -47.48 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 56.65 SS G_CDS: -0.62 Total: 56.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -38.28 -8.54 -46.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070417078.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.756 kcal (2) G-P(sol) polarization free energy of solvation -38.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds