Wall clock time and date at job start Tue Mar 31 2020 10:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09007 * 109.47112 * 185.16386 * 3 2 1 5 5 C 1.50702 * 109.46921 * 305.15842 * 3 2 1 6 6 H 1.08003 * 119.99892 * 120.00686 * 5 3 2 7 7 C 1.37874 * 120.00276 * 299.99947 * 5 3 2 8 8 N 1.31514 * 119.99738 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00138 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47320 * 60.00122 * 9 7 5 11 11 H 1.48496 * 109.47249 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47314 * 300.00247 * 9 7 5 13 13 N 1.46898 * 109.47156 * 65.15904 * 3 2 1 14 14 C 1.46906 * 110.99587 * 85.90258 * 13 3 2 15 15 C 1.50698 * 109.46659 * 174.80697 * 14 13 3 16 16 C 1.38267 * 119.99156 * 90.00030 * 15 14 13 17 17 C 1.38199 * 120.00880 * 180.02562 * 16 15 14 18 18 C 1.38345 * 119.99094 * 359.97438 * 17 16 15 19 19 Br 1.89100 * 120.00837 * 179.72581 * 18 17 16 20 20 C 1.38301 * 119.98259 * 0.02562 * 18 17 16 21 21 C 1.50696 * 120.00866 * 179.97438 * 20 18 17 22 22 C 1.38225 * 119.99202 * 270.01680 * 15 14 13 23 23 H 1.08997 * 109.47259 * 294.84918 * 1 2 3 24 24 H 1.09000 * 109.47148 * 54.84932 * 1 2 3 25 25 H 1.08999 * 109.46780 * 174.84850 * 1 2 3 26 26 H 1.09003 * 109.46945 * 240.00239 * 2 1 3 27 27 H 1.08998 * 109.47170 * 120.00270 * 2 1 3 28 28 H 0.97004 * 119.99654 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00198 * 321.94880 * 13 3 2 30 30 H 1.08995 * 109.47655 * 54.80592 * 14 13 3 31 31 H 1.08993 * 109.46736 * 294.80204 * 14 13 3 32 32 H 1.07998 * 119.99653 * 359.97438 * 16 15 14 33 33 H 1.08003 * 120.00370 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47090 * 90.00068 * 21 20 18 35 35 H 1.09003 * 109.47305 * 210.00049 * 21 20 18 36 36 H 1.09003 * 109.47111 * 330.00133 * 21 20 18 37 37 H 1.08002 * 119.98787 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9840 7 6 1.6611 1.7559 -2.4512 8 7 2.4025 0.6914 -2.6674 9 14 0.9131 2.6814 -3.8910 10 1 1.4086 4.0813 -3.8909 11 1 1.3020 2.0183 -5.1615 12 1 -0.5666 2.6801 -3.7653 13 7 1.6546 2.0981 1.2568 14 6 2.6433 1.8367 2.3115 15 6 2.2833 2.6256 3.5440 16 6 1.4560 2.0706 4.5028 17 6 1.1253 2.7940 5.6329 18 6 1.6225 4.0734 5.8051 19 35 1.1640 5.0666 7.3476 20 6 2.4500 4.6282 4.8459 21 6 2.9915 6.0221 5.0326 22 6 2.7801 3.9041 3.7155 23 1 -0.3633 0.4318 0.9325 24 1 -0.3633 0.5917 -0.8403 25 1 -0.3633 -1.0235 -0.0923 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5606 0.3867 -3.5747 29 1 0.7320 1.8104 1.5467 30 1 3.6324 2.1357 1.9647 31 1 2.6479 0.7730 2.5495 32 1 1.0675 1.0719 4.3681 33 1 0.4787 2.3605 6.3816 34 1 3.9424 5.9744 5.5633 35 1 3.1421 6.4870 4.0582 36 1 2.2817 6.6132 5.6113 37 1 3.4257 4.3374 2.9660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085706930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:40 Heat of formation + Delta-G solvation = 12.143960 kcal Electronic energy + Delta-G solvation = -17710.241253 eV Core-core repulsion = 14918.922035 eV Total energy + Delta-G solvation = -2791.319218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50165 -36.58589 -33.81256 -32.42690 -31.84524 -30.67243 -29.13014 -27.03375 -26.32129 -24.20992 -23.19034 -22.16687 -20.27652 -19.31760 -16.54885 -15.98441 -15.75956 -14.93628 -14.78951 -14.39135 -14.01939 -13.59915 -13.21314 -12.93783 -12.82179 -12.55210 -12.34670 -12.17288 -11.91887 -11.62405 -11.25488 -11.05225 -10.88222 -10.73918 -10.63894 -10.54257 -10.15529 -10.00702 -9.81159 -9.59648 -9.03293 -8.74007 -8.45339 -8.35830 -7.26974 -5.99122 -4.00794 1.17529 1.38330 1.62769 3.33617 3.38034 3.41375 3.67023 4.43776 4.74911 4.81627 4.95667 5.32460 5.33068 5.34894 5.52822 5.55510 5.57144 5.68479 5.81719 5.97918 6.13486 6.20302 6.26278 6.31419 6.34535 6.42199 6.54034 6.75924 6.86036 6.92940 7.23616 7.24183 7.49390 7.66841 7.86525 8.24691 8.49080 8.57889 9.04538 9.62884 11.07811 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.003030 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.818113 B = 9237.848706 C = 9644.729685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.091 3.909 15 C -0.042 4.042 16 C -0.119 4.119 17 C -0.089 4.089 18 C -0.101 4.101 19 Br -0.064 7.064 20 C -0.059 4.059 21 C -0.123 4.123 22 C -0.095 4.095 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.023 0.977 26 H 0.093 0.907 27 H 0.010 0.990 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 6.037 19.504 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.038 4.038 15 C -0.043 4.043 16 C -0.138 4.138 17 C -0.109 4.109 18 C -0.181 4.181 19 Br 0.021 6.979 20 C -0.061 4.061 21 C -0.180 4.180 22 C -0.114 4.114 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.112 0.888 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.318 6.910 19.733 20.910 hybrid contribution -0.535 -0.859 -0.969 1.401 sum -0.853 6.050 18.764 19.734 Atomic orbital electron populations 1.21600 0.97653 0.98712 1.00802 1.22114 0.95051 1.01086 1.00285 1.19249 0.96025 0.88616 0.85317 0.94880 1.21016 1.30631 1.11532 0.89610 0.92057 1.24905 0.95527 0.95163 0.98718 1.69870 1.38970 1.23944 1.20829 0.86625 0.79567 0.79998 0.81588 1.20328 1.21510 1.20376 1.60874 1.03575 1.63259 1.03097 1.20946 0.98016 0.95526 0.89342 1.20220 0.94450 0.94469 0.95148 1.21067 0.98769 1.00306 0.93688 1.20980 0.99173 0.92576 0.98131 1.21587 1.05215 0.96524 0.94733 1.96603 1.92727 1.73283 1.35273 1.19770 0.96154 0.96768 0.93408 1.20971 1.01465 0.92399 1.03163 1.20968 1.00415 0.93771 0.96251 0.95436 0.91178 0.95753 0.88836 0.97107 0.93044 0.85363 0.90553 0.95191 0.85528 0.85464 0.90766 0.90843 0.90785 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.40 37.16 0.35 -2.37 16 2 C -0.15 -3.31 5.51 -26.73 -0.15 -3.46 16 3 C 0.22 5.15 2.33 -68.87 -0.16 4.98 16 4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.49 -12.96 7.25 -34.44 -0.25 -13.21 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -24.86 11.38 55.43 0.63 -24.23 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.76 6.19 -109.22 -0.68 -14.44 16 14 C 0.09 1.55 5.63 -4.97 -0.03 1.53 16 15 C -0.04 -0.63 5.44 -104.62 -0.57 -1.20 16 16 C -0.12 -1.60 9.70 -39.59 -0.38 -1.98 16 17 C -0.09 -1.11 9.79 -39.56 -0.39 -1.50 16 18 C -0.10 -1.29 6.22 -39.52 -0.25 -1.54 16 19 Br -0.06 -0.70 31.78 -68.01 -2.16 -2.87 16 20 C -0.06 -0.77 5.88 -104.60 -0.62 -1.38 16 21 C -0.12 -1.30 9.56 36.00 0.34 -0.95 16 22 C -0.09 -1.35 9.36 -39.59 -0.37 -1.72 16 23 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 24 H 0.07 1.62 6.85 -51.93 -0.36 1.26 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.40 6.22 -51.93 -0.32 2.08 16 27 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.33 6.47 6.69 -39.29 -0.26 6.21 16 30 H 0.08 1.33 7.87 -51.93 -0.41 0.92 16 31 H 0.03 0.50 7.48 -51.93 -0.39 0.11 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.07 0.75 6.64 -51.93 -0.34 0.41 16 37 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -27.01 319.83 -10.26 -37.27 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.30 Total: 4.71 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.56 Total: -21.34 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.05 Total: -38.67 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.16 Total: -2.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.01 -10.26 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085706930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.418 kcal (2) G-P(sol) polarization free energy of solvation -27.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds