Wall clock time and date at job start Tue Mar 31 2020 10:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09007 * 109.47112 * 185.16386 * 3 2 1 5 5 C 1.50702 * 109.46921 * 305.15842 * 3 2 1 6 6 H 1.08003 * 119.99892 * 120.00686 * 5 3 2 7 7 C 1.37874 * 120.00276 * 299.99947 * 5 3 2 8 8 N 1.31514 * 119.99738 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00138 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47320 * 60.00122 * 9 7 5 11 11 H 1.48496 * 109.47249 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47314 * 300.00247 * 9 7 5 13 13 N 1.46898 * 109.47156 * 65.15904 * 3 2 1 14 14 C 1.46906 * 110.99587 * 85.90258 * 13 3 2 15 15 C 1.50698 * 109.46659 * 174.80697 * 14 13 3 16 16 C 1.38267 * 119.99156 * 90.00030 * 15 14 13 17 17 C 1.38199 * 120.00880 * 180.02562 * 16 15 14 18 18 C 1.38345 * 119.99094 * 359.97438 * 17 16 15 19 19 Br 1.89100 * 120.00837 * 179.72581 * 18 17 16 20 20 C 1.38301 * 119.98259 * 0.02562 * 18 17 16 21 21 C 1.50696 * 120.00866 * 179.97438 * 20 18 17 22 22 C 1.38225 * 119.99202 * 270.01680 * 15 14 13 23 23 H 1.08997 * 109.47259 * 294.84918 * 1 2 3 24 24 H 1.09000 * 109.47148 * 54.84932 * 1 2 3 25 25 H 1.08999 * 109.46780 * 174.84850 * 1 2 3 26 26 H 1.09003 * 109.46945 * 240.00239 * 2 1 3 27 27 H 1.08998 * 109.47170 * 120.00270 * 2 1 3 28 28 H 0.97004 * 119.99654 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00198 * 321.94880 * 13 3 2 30 30 H 1.08995 * 109.47655 * 54.80592 * 14 13 3 31 31 H 1.08993 * 109.46736 * 294.80204 * 14 13 3 32 32 H 1.07998 * 119.99653 * 359.97438 * 16 15 14 33 33 H 1.08003 * 120.00370 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47090 * 90.00068 * 21 20 18 35 35 H 1.09003 * 109.47305 * 210.00049 * 21 20 18 36 36 H 1.09003 * 109.47111 * 330.00133 * 21 20 18 37 37 H 1.08002 * 119.98787 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9840 7 6 1.6611 1.7559 -2.4512 8 7 2.4025 0.6914 -2.6674 9 14 0.9131 2.6814 -3.8910 10 1 1.4086 4.0813 -3.8909 11 1 1.3020 2.0183 -5.1615 12 1 -0.5666 2.6801 -3.7653 13 7 1.6546 2.0981 1.2568 14 6 2.6433 1.8367 2.3115 15 6 2.2833 2.6256 3.5440 16 6 1.4560 2.0706 4.5028 17 6 1.1253 2.7940 5.6329 18 6 1.6225 4.0734 5.8051 19 35 1.1640 5.0666 7.3476 20 6 2.4500 4.6282 4.8459 21 6 2.9915 6.0221 5.0326 22 6 2.7801 3.9041 3.7155 23 1 -0.3633 0.4318 0.9325 24 1 -0.3633 0.5917 -0.8403 25 1 -0.3633 -1.0235 -0.0923 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5606 0.3867 -3.5747 29 1 0.7320 1.8104 1.5467 30 1 3.6324 2.1357 1.9647 31 1 2.6479 0.7730 2.5495 32 1 1.0675 1.0719 4.3681 33 1 0.4787 2.3605 6.3816 34 1 3.9424 5.9744 5.5633 35 1 3.1421 6.4870 4.0582 36 1 2.2817 6.6132 5.6113 37 1 3.4257 4.3374 2.9660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085706930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:39 Heat of formation + Delta-G solvation = -1.302738 kcal Electronic energy + Delta-G solvation = -17710.824346 eV Core-core repulsion = 14918.922035 eV Total energy + Delta-G solvation = -2791.902311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56327 -38.26929 -35.21877 -33.79255 -33.16396 -32.12000 -30.38071 -28.40918 -27.71161 -25.76105 -24.93093 -23.19015 -21.49727 -21.07375 -18.24402 -17.28345 -16.91945 -16.76058 -16.19471 -15.74389 -15.24056 -14.98142 -14.61226 -14.34646 -14.21162 -13.94697 -13.73776 -13.40297 -13.08974 -12.93852 -12.82897 -12.69999 -12.43926 -12.22709 -12.08982 -11.80837 -11.75297 -11.54701 -11.39918 -11.05644 -10.96244 -10.41360 -9.75562 -9.50421 -8.92129 -8.04104 -6.12255 0.11925 0.36581 0.66377 1.45334 1.45692 1.53197 2.46093 2.61932 3.24801 3.70828 3.75678 3.88468 4.03889 4.29376 4.34851 4.46899 4.56863 4.61619 4.66630 4.73080 4.74259 4.77373 4.85078 4.99919 5.11753 5.23106 5.23761 5.36552 5.39483 5.44490 5.66048 5.71994 5.76286 5.84196 5.89628 6.33166 6.68027 6.83913 6.99619 7.55353 9.00826 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.003030 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.818113 B = 9237.848706 C = 9644.729685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.221 3.779 4 H 0.000 1.000 5 C -0.500 4.500 6 H 0.051 0.949 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.680 5.680 14 C 0.098 3.902 15 C -0.057 4.057 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.110 4.110 19 Br -0.045 7.045 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.108 4.108 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.333 0.667 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 6.575 21.040 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.538 4.538 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.312 5.312 14 C -0.032 4.032 15 C -0.058 4.058 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.189 4.189 19 Br 0.041 6.959 20 C -0.065 4.065 21 C -0.179 4.179 22 C -0.127 4.127 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.332 7.456 21.289 22.596 hybrid contribution -0.200 -0.985 -1.332 1.669 sum -1.532 6.470 19.956 21.035 Atomic orbital electron populations 1.21483 0.95994 0.99586 1.00826 1.21957 0.96454 0.99926 0.99521 1.18987 0.93769 0.89467 0.86480 0.98211 1.21243 1.30405 1.11350 0.90851 0.93094 1.25557 0.95947 0.95874 1.00934 1.69999 1.39945 1.25033 1.21082 0.85749 0.79032 0.78787 0.78867 1.20188 1.21279 1.19759 1.60716 1.04512 1.63000 1.02929 1.20859 0.96629 0.96311 0.89355 1.20042 0.96119 0.94813 0.94831 1.21207 0.98278 1.00980 0.93564 1.21237 0.98928 0.92400 0.98115 1.21838 1.04790 0.96935 0.95341 1.96621 1.92530 1.72842 1.33936 1.20001 0.95952 0.97656 0.92885 1.21016 1.02098 0.91061 1.03708 1.21029 1.00850 0.93875 0.96957 0.93227 0.93741 0.93929 0.91989 0.95374 0.93215 0.84810 0.91688 0.94601 0.84231 0.83301 0.89455 0.90477 0.90253 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.40 71.98 0.68 -4.26 16 2 C -0.14 -6.31 5.51 30.59 0.17 -6.14 16 3 C 0.22 10.75 2.33 44.17 0.10 10.86 16 4 H 0.00 0.00 7.70 -2.38 -0.02 -0.02 16 5 C -0.50 -26.84 7.25 25.60 0.19 -26.65 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.02 0.82 5.28 84.65 0.45 1.27 16 8 N -0.92 -51.96 11.38 21.45 0.24 -51.72 16 9 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 N -0.68 -27.63 6.19 -499.46 -3.09 -30.72 16 14 C 0.10 3.32 5.63 85.56 0.48 3.81 16 15 C -0.06 -1.67 5.44 -19.86 -0.11 -1.77 16 16 C -0.12 -3.03 9.70 22.27 0.22 -2.82 16 17 C -0.09 -1.98 9.79 22.29 0.22 -1.76 16 18 C -0.11 -2.57 6.22 22.31 0.14 -2.43 16 19 Br -0.04 -0.87 31.78 -20.37 -0.65 -1.52 16 20 C -0.06 -1.54 5.88 -19.85 -0.12 -1.66 16 21 C -0.12 -2.36 9.56 71.23 0.68 -1.68 16 22 C -0.11 -3.01 9.36 22.27 0.21 -2.80 16 23 H 0.05 1.76 6.63 -2.39 -0.02 1.75 16 24 H 0.04 2.02 6.85 -2.39 -0.02 2.01 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 3.23 6.22 -2.39 -0.01 3.21 16 27 H 0.03 1.15 7.50 -2.39 -0.02 1.13 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.33 12.83 6.69 -89.70 -0.60 12.23 16 30 H 0.06 2.33 7.87 -2.39 -0.02 2.31 16 31 H 0.04 1.17 7.48 -2.39 -0.02 1.16 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.08 1.44 6.64 -2.39 -0.02 1.43 16 37 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -57.43 319.83 2.29 -55.13 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.46 Total: 19.38 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.30 Total: -36.04 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.85 Total: -82.44 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -0.65 Total: -1.52 kcal Total: -57.43 2.29 -55.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085706930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.832 kcal (2) G-P(sol) polarization free energy of solvation -57.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds