Wall clock time and date at job start Tue Mar 31 2020 10:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 H 1.09003 * 109.46990 * 175.22063 * 3 2 1 5 5 C 1.50704 * 109.47137 * 55.22651 * 3 2 1 6 6 H 1.07994 * 119.99825 * 245.72407 * 5 3 2 7 7 C 1.37876 * 120.00200 * 65.72099 * 5 3 2 8 8 N 1.31513 * 119.99897 * 5.51787 * 7 5 3 9 9 Si 1.86798 * 120.00165 * 185.51931 * 7 5 3 10 10 H 1.48500 * 109.47316 * 270.00103 * 9 7 5 11 11 H 1.48498 * 109.47057 * 30.00101 * 9 7 5 12 12 H 1.48501 * 109.47121 * 149.99803 * 9 7 5 13 13 N 1.46896 * 109.47494 * 295.22257 * 3 2 1 14 14 C 1.46896 * 111.00229 * 279.79967 * 13 3 2 15 15 C 1.50702 * 109.46938 * 184.98112 * 14 13 3 16 16 C 1.38267 * 119.98832 * 90.00025 * 15 14 13 17 17 C 1.38196 * 120.00700 * 179.97438 * 16 15 14 18 18 C 1.38348 * 119.98975 * 0.02562 * 17 16 15 19 19 Br 1.89103 * 120.00915 * 179.97438 * 18 17 16 20 20 C 1.38301 * 119.98109 * 359.97438 * 18 17 16 21 21 C 1.50703 * 120.00601 * 179.97438 * 20 18 17 22 22 C 1.38220 * 119.98730 * 269.71454 * 15 14 13 23 23 H 1.08999 * 109.46622 * 304.94605 * 1 2 3 24 24 H 1.08996 * 109.47031 * 64.94371 * 1 2 3 25 25 H 1.08999 * 109.47098 * 184.94848 * 1 2 3 26 26 H 1.09000 * 109.46703 * 240.00057 * 2 1 3 27 27 H 1.08999 * 109.47161 * 120.00040 * 2 1 3 28 28 H 0.97002 * 120.00155 * 355.15166 * 8 7 5 29 29 H 1.00900 * 111.00246 * 155.83477 * 13 3 2 30 30 H 1.09003 * 109.46721 * 304.97686 * 14 13 3 31 31 H 1.09002 * 109.47443 * 64.97614 * 14 13 3 32 32 H 1.07994 * 119.99759 * 359.97438 * 16 15 14 33 33 H 1.07993 * 120.00446 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.46668 * 90.00155 * 21 20 18 35 35 H 1.09000 * 109.47225 * 210.00211 * 21 20 18 36 36 H 1.08994 * 109.47089 * 330.00837 * 21 20 18 37 37 H 1.07993 * 119.99340 * 0.03355 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1267 1.4435 0.0856 5 6 1.4435 2.1862 1.1671 6 1 0.7593 3.0035 0.9937 7 6 1.7712 1.8231 2.4562 8 7 2.6853 0.9016 2.6675 9 14 0.9167 2.6400 3.9025 10 1 1.6809 3.8455 4.3125 11 1 -0.4581 3.0369 3.5054 12 1 0.8479 1.6871 5.0394 13 7 1.6469 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1952 2.5188 -3.5830 16 6 2.7853 3.7474 -3.8160 17 6 2.4569 4.4682 -4.9484 18 6 1.5373 3.9605 -5.8488 19 35 1.0871 4.9467 -7.3982 20 6 0.9473 2.7317 -5.6153 21 6 -0.0549 2.1784 -6.5954 22 6 1.2807 2.0086 -4.4852 23 1 -0.3632 0.5887 0.8424 24 1 -0.3633 0.4352 -0.9309 25 1 -0.3633 -1.0238 0.0886 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0785 0.4275 1.9181 29 1 1.6064 3.1025 -1.1378 30 1 3.5810 1.9574 -2.0603 31 1 2.4595 0.6670 -2.5557 32 1 3.5028 4.1437 -3.1129 33 1 2.9182 5.4275 -5.1306 34 1 0.4628 1.5826 -7.3470 35 1 -0.7728 1.5518 -6.0662 36 1 -0.5795 3.0008 -7.0817 37 1 0.8232 1.0472 -4.3048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085706933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:41 Heat of formation + Delta-G solvation = 7.321135 kcal Electronic energy + Delta-G solvation = -17749.367815 eV Core-core repulsion = 14957.839463 eV Total energy + Delta-G solvation = -2791.528352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58506 -36.65434 -34.00551 -32.51944 -31.84859 -30.72643 -29.37007 -27.05214 -26.06583 -23.95728 -23.44637 -22.24247 -20.37224 -19.27132 -17.12825 -16.26158 -15.88109 -14.94207 -14.46263 -14.20481 -13.94151 -13.80104 -13.60041 -13.20229 -12.86048 -12.55100 -12.32477 -12.14133 -11.89986 -11.76938 -11.24922 -11.19021 -10.87915 -10.78579 -10.75346 -10.20836 -10.17921 -10.11324 -9.92243 -9.75901 -8.82428 -8.65258 -8.46365 -8.32571 -7.44662 -6.37124 -4.09493 1.09463 1.30866 1.56838 3.41018 3.45583 3.58883 3.60917 4.48989 4.67492 4.74850 4.86670 5.23796 5.27227 5.34868 5.40833 5.47493 5.49615 5.60978 5.74204 5.90071 6.05018 6.10559 6.19553 6.28451 6.32864 6.38145 6.57045 6.67631 6.84716 6.90962 7.01621 7.21786 7.39487 7.53882 7.81989 8.05053 8.45502 8.53988 8.84493 9.61304 10.99487 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.003014 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.853457 B = 9287.340716 C = 9626.323953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.203 3.797 4 H -0.008 1.008 5 C -0.591 4.591 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.671 5.671 14 C 0.091 3.909 15 C -0.047 4.047 16 C -0.117 4.117 17 C -0.088 4.088 18 C -0.100 4.100 19 Br -0.062 7.062 20 C -0.059 4.059 21 C -0.123 4.123 22 C -0.096 4.096 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.017 0.983 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.271 0.729 29 H 0.335 0.665 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 5.475 -20.532 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.009 0.991 5 C -0.629 4.629 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.302 5.302 14 C -0.038 4.038 15 C -0.047 4.047 16 C -0.136 4.136 17 C -0.107 4.107 18 C -0.179 4.179 19 Br 0.023 6.977 20 C -0.061 4.061 21 C -0.180 4.180 22 C -0.115 4.115 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.856 5.423 -19.599 20.535 hybrid contribution 1.009 0.231 -1.062 1.483 sum -1.847 5.654 -20.661 21.500 Atomic orbital electron populations 1.21452 0.96375 0.97873 1.02056 1.21523 0.96494 0.98228 0.98349 1.19308 0.93190 0.91730 0.86265 0.99055 1.21925 1.30642 1.18716 0.91654 0.92739 1.25705 0.95506 0.96889 1.00078 1.70771 1.24251 1.24103 1.35784 0.83550 0.75619 0.75698 0.75435 1.21603 1.21357 1.21038 1.60682 1.50078 1.13559 1.05891 1.20998 0.94842 0.98705 0.89302 1.20187 0.94535 0.94413 0.95611 1.21096 1.00772 0.94653 0.97112 1.21001 0.96376 0.99797 0.93557 1.21609 1.03927 0.96925 0.95478 1.96613 1.93142 1.72737 1.35179 1.19770 0.97137 0.92861 0.96347 1.20970 0.97401 1.01789 0.97818 1.20937 0.97515 1.00249 0.92807 0.91778 0.93622 0.96399 0.96141 0.92354 0.91695 0.84710 0.95073 0.90773 0.85363 0.85331 0.90727 0.90899 0.90720 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.53 37.16 0.35 -2.25 16 2 C -0.11 -2.45 5.47 -26.74 -0.15 -2.60 16 3 C 0.20 4.85 1.92 -68.87 -0.13 4.72 16 4 H -0.01 -0.21 7.31 -51.93 -0.38 -0.59 16 5 C -0.59 -15.69 6.92 -34.44 -0.24 -15.93 16 6 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 7 C 0.02 0.63 5.28 -17.82 -0.09 0.53 16 8 N -0.91 -26.53 13.20 55.43 0.73 -25.79 16 9 Si 1.07 24.64 29.91 -169.99 -5.08 19.55 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -13.56 5.85 -109.22 -0.64 -14.20 16 14 C 0.09 1.54 5.64 -4.98 -0.03 1.51 16 15 C -0.05 -0.69 5.34 -104.62 -0.56 -1.24 16 16 C -0.12 -1.58 9.70 -39.59 -0.38 -1.96 16 17 C -0.09 -1.09 9.79 -39.56 -0.39 -1.48 16 18 C -0.10 -1.25 6.22 -39.52 -0.25 -1.50 16 19 Br -0.06 -0.67 31.79 -68.01 -2.16 -2.83 16 20 C -0.06 -0.74 5.88 -104.60 -0.62 -1.36 16 21 C -0.12 -1.24 9.55 36.01 0.34 -0.89 16 22 C -0.10 -1.31 9.36 -39.59 -0.37 -1.68 16 23 H 0.06 1.52 6.89 -51.93 -0.36 1.16 16 24 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 27 H 0.06 1.46 6.18 -51.93 -0.32 1.14 16 28 H 0.27 7.83 5.62 -40.82 -0.23 7.60 16 29 H 0.34 6.86 8.30 -39.29 -0.33 6.53 16 30 H 0.03 0.54 7.89 -51.93 -0.41 0.13 16 31 H 0.07 1.25 7.14 -51.93 -0.37 0.88 16 32 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.07 0.72 6.65 -51.93 -0.35 0.38 16 37 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -28.02 319.97 -10.09 -38.11 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.26 Total: 4.47 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -2.50 Total: -24.13 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.09 Total: -39.99 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.55 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.16 Total: -2.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.02 -10.09 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085706933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.427 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds