Wall clock time and date at job start Tue Mar 31 2020 10:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00117 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47306 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47019 * 120.00329 * 12 10 8 15 15 H 1.48498 * 109.47326 * 240.00104 * 12 10 8 16 16 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 17 17 C 1.38247 * 120.00951 * 265.00340 * 16 2 1 18 18 C 1.38220 * 120.01022 * 179.97438 * 17 16 2 19 19 C 1.38265 * 120.01964 * 0.02562 * 18 17 16 20 20 C 1.38193 * 120.01168 * 359.97438 * 19 18 17 21 21 C 1.38308 * 120.00352 * 84.72072 * 16 2 1 22 22 Br 1.89102 * 120.00798 * 0.03407 * 21 16 2 23 23 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 24 24 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 31 31 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 32 32 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 33 33 H 0.96996 * 119.99885 * 179.97438 * 11 10 8 34 34 H 1.07996 * 119.99123 * 359.95045 * 17 16 2 35 35 H 1.08001 * 119.98641 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.99108 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.00453 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6610 0.4201 4.7694 8 6 3.1653 -0.3244 5.9787 9 1 3.4143 -1.3726 5.9025 10 6 3.3099 0.3327 7.1821 11 7 3.0072 1.6092 7.2748 12 14 3.9343 -0.5903 8.6813 13 1 4.2011 -2.0048 8.3161 14 1 5.1889 0.0409 9.1642 15 1 2.9101 -0.5407 9.7553 16 6 2.0323 -0.7105 -1.2304 17 6 2.3611 -2.0518 -1.1684 18 6 2.8213 -2.7036 -2.2971 19 6 2.9536 -2.0143 -3.4883 20 6 2.6252 -0.6735 -3.5512 21 6 2.1589 -0.0221 -2.4232 22 35 1.7027 1.8110 -2.5104 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.4494 -1.4979 1.4101 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.3380 1.2432 4.5406 32 1 1.6659 0.8145 4.9750 33 1 3.1085 2.0714 8.1216 34 1 2.2586 -2.5903 -0.2379 35 1 3.0777 -3.7516 -2.2483 36 1 3.3137 -2.5240 -4.3699 37 1 2.7282 -0.1353 -4.4818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088162676.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:33 Heat of formation + Delta-G solvation = 8.252346 kcal Electronic energy + Delta-G solvation = -17261.855663 eV Core-core repulsion = 14470.367692 eV Total energy + Delta-G solvation = -2791.487971 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76488 -36.94031 -34.08333 -32.66513 -32.08042 -30.39796 -29.44799 -28.65603 -25.94067 -23.84202 -22.88203 -21.90605 -20.72584 -19.99937 -17.04345 -16.31432 -15.77596 -15.41323 -15.09746 -14.48466 -14.29949 -14.01041 -13.70906 -13.56178 -13.21282 -12.76042 -12.36973 -12.14439 -11.81573 -11.63257 -11.42567 -11.21847 -11.11822 -10.91853 -10.85355 -10.56880 -10.46436 -10.18776 -9.69568 -9.34025 -9.04734 -8.97095 -8.79918 -8.32935 -8.21425 -5.97862 -3.99828 0.95591 1.16715 1.50515 3.32499 3.39865 3.44271 3.47760 4.22503 4.48692 4.58619 4.73502 4.83667 5.07261 5.17027 5.18153 5.30262 5.38047 5.50922 5.61837 5.66998 5.82547 5.87267 5.90830 6.03147 6.11185 6.25710 6.30117 6.33596 6.67309 6.73101 6.78303 7.14868 7.30718 7.57835 7.70855 7.85635 8.02759 8.45904 9.07653 9.64149 11.13628 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.002941 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.858540 B = 9519.170095 C =10299.624805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.110 3.890 3 H 0.096 0.904 4 N -0.682 5.682 5 C 0.060 3.940 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.036 4.036 17 C -0.091 4.091 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.094 4.094 21 C -0.092 4.092 22 Br -0.054 7.054 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.338 0.662 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 -3.949 -25.561 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.000 4.000 3 H 0.114 0.886 4 N -0.312 5.312 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.038 4.038 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.143 4.143 20 C -0.114 4.114 21 C -0.172 4.172 22 Br 0.032 6.968 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.156 0.844 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.851 -3.020 -25.618 26.082 hybrid contribution -0.460 -0.678 1.090 1.363 sum -4.311 -3.698 -24.529 25.178 Atomic orbital electron populations 1.22446 0.95789 1.02373 1.02934 1.20603 0.93115 0.98023 0.88275 0.88575 1.60667 1.56498 1.10130 1.03951 1.22167 0.99317 0.95400 0.89978 1.21618 1.00082 0.98922 0.93816 1.19068 0.97049 0.94351 0.91140 1.21293 1.43394 0.96396 0.94514 0.92631 1.25036 0.95668 0.94885 0.98988 1.69979 1.49034 1.08977 1.25600 0.86545 0.78497 0.80066 0.82949 1.19727 1.21025 1.21071 1.19802 0.96740 0.94180 0.93088 1.21063 0.97714 0.93439 0.98762 1.21328 0.98181 1.00233 0.92762 1.21113 1.00941 0.93877 0.98379 1.21020 0.98383 0.94931 0.97051 1.21674 1.07632 0.91219 0.96641 1.96688 1.92263 1.09203 1.98689 0.91759 0.92328 0.91618 0.84387 0.91382 0.95450 0.93652 0.92548 0.96558 0.96801 0.93108 0.84507 0.85523 0.85494 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.13 37.15 0.34 -1.66 16 2 C 0.11 1.40 2.23 -68.87 -0.15 1.25 16 3 H 0.10 1.33 6.56 -51.93 -0.34 0.99 16 4 N -0.68 -9.69 5.25 -107.96 -0.57 -10.26 16 5 C 0.06 1.02 5.48 -3.83 -0.02 1.00 16 6 C -0.11 -2.19 5.41 -26.74 -0.14 -2.34 16 7 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 8 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 9 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 10 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 12 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.04 -0.43 5.06 -104.60 -0.53 -0.96 16 17 C -0.09 -1.00 9.32 -39.58 -0.37 -1.37 16 18 C -0.11 -0.99 10.05 -39.58 -0.40 -1.39 16 19 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 20 C -0.09 -0.92 9.79 -39.56 -0.39 -1.31 16 21 C -0.09 -1.05 6.22 -39.52 -0.25 -1.29 16 22 Br -0.05 -0.59 31.33 -68.01 -2.13 -2.72 16 23 H 0.06 0.69 7.59 -51.93 -0.39 0.30 16 24 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.06 0.77 7.45 -51.93 -0.39 0.39 16 26 H 0.34 4.38 7.90 -39.29 -0.31 4.07 16 27 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.14 1.45 6.89 -52.49 -0.36 1.09 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -30.38 325.81 -10.45 -40.83 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.52 Total: -0.33 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.86 Total: -22.77 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.17 Total: -36.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.13 Total: -2.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.38 -10.45 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088162676.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds