Wall clock time and date at job start Tue Mar 31 2020 09:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38352 * 120.00495 * 2 1 4 4 Br 1.89100 * 120.00806 * 359.97438 * 3 2 1 5 5 C 1.38306 * 119.97938 * 180.25713 * 3 2 1 6 6 C 1.38239 * 119.98853 * 359.42561 * 5 3 2 7 7 C 1.38219 * 120.00951 * 0.57468 * 6 5 3 8 8 C 1.38195 * 120.00433 * 179.97438 * 2 1 3 9 9 C 1.50699 * 119.99518 * 0.02562 * 8 2 1 10 10 N 1.46895 * 109.46913 * 80.00562 * 9 8 2 11 11 C 1.46899 * 111.00287 * 66.04497 * 10 9 8 12 12 C 1.46903 * 110.99838 * 190.00078 * 10 9 8 13 13 H 1.09007 * 109.46865 * 299.99709 * 12 10 9 14 14 C 1.52998 * 109.47212 * 59.99492 * 12 10 9 15 15 C 1.50701 * 109.47280 * 179.97438 * 12 10 9 16 16 H 1.08001 * 119.99495 * 0.02562 * 15 12 10 17 17 C 1.37874 * 120.00073 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00160 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00051 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46923 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47216 * 119.99799 * 19 17 15 22 22 H 1.48498 * 109.47353 * 240.00082 * 19 17 15 23 23 H 1.09003 * 109.47350 * 89.99562 * 1 2 3 24 24 H 1.09002 * 109.46781 * 209.99612 * 1 2 3 25 25 H 1.09000 * 109.47171 * 329.99331 * 1 2 3 26 26 H 1.07997 * 120.00400 * 179.70246 * 5 3 2 27 27 H 1.07997 * 119.99817 * 180.27927 * 6 5 3 28 28 H 1.08001 * 119.99215 * 179.69594 * 7 6 5 29 29 H 1.09007 * 109.47000 * 200.00149 * 9 8 2 30 30 H 1.08994 * 109.47561 * 320.00169 * 9 8 2 31 31 H 1.08996 * 109.47204 * 60.00091 * 11 10 9 32 32 H 1.09006 * 109.47210 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.47386 * 299.99869 * 11 10 9 34 34 H 1.08998 * 109.47238 * 299.99832 * 14 12 10 35 35 H 1.08998 * 109.46873 * 60.00449 * 14 12 10 36 36 H 1.09005 * 109.47216 * 180.02562 * 14 12 10 37 37 H 0.97005 * 120.00303 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1981 0.0000 4 35 1.2537 2.8360 -0.0007 5 6 3.5819 1.1975 -0.0054 6 6 4.2723 -0.0001 0.0013 7 6 3.5807 -1.1968 0.0013 8 6 2.1980 -1.1968 0.0005 9 6 1.4445 -2.5018 0.0005 10 7 0.9921 -2.8060 -1.3635 11 6 2.1336 -3.0614 -2.2522 12 6 0.0576 -3.9394 -1.3677 13 1 0.5530 -4.8203 -0.9593 14 6 -1.1629 -3.5974 -0.5108 15 6 -0.3843 -4.2209 -2.7807 16 1 -0.0081 -3.6184 -3.5943 17 6 -1.2679 -5.2484 -3.0350 18 7 -1.7247 -5.9830 -2.0445 19 14 -1.8162 -5.5969 -4.7864 20 1 -1.1621 -4.6356 -5.7103 21 1 -1.4308 -6.9816 -5.1594 22 1 -3.2908 -5.4507 -4.8818 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 4.1223 2.1325 -0.0102 27 1 5.3523 -0.0007 0.0016 28 1 4.1204 -2.1323 0.0015 29 1 2.0991 -3.2993 0.3525 30 1 0.5809 -2.4228 0.6607 31 1 2.7041 -3.9105 -1.8758 32 1 1.7703 -3.2835 -3.2556 33 1 2.7733 -2.1795 -2.2847 34 1 -0.8436 -3.3936 0.5113 35 1 -1.6583 -2.7166 -0.9192 36 1 -1.8561 -4.4386 -0.5135 37 1 -2.3467 -6.7057 -2.2233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090552284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:48 Heat of formation + Delta-G solvation = 29.767354 kcal Electronic energy + Delta-G solvation = -18357.335231 eV Core-core repulsion = 15566.780221 eV Total energy + Delta-G solvation = -2790.555011 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64337 -36.82805 -33.24171 -32.95963 -31.83577 -29.72400 -28.89892 -27.16650 -26.39957 -24.65062 -23.35309 -21.53144 -20.65877 -19.29702 -16.45947 -16.14061 -15.83897 -15.19353 -14.68176 -14.22943 -13.84228 -13.48434 -13.39113 -13.07831 -12.48812 -12.41764 -12.10755 -11.96850 -11.81125 -11.35338 -11.06685 -10.99057 -10.91307 -10.80964 -10.60896 -10.44919 -10.13640 -10.04702 -10.00850 -9.81761 -8.92315 -8.56774 -8.48226 -8.37970 -7.20751 -6.03270 -4.07549 1.22870 1.42580 1.72572 3.28490 3.36715 3.41022 3.70759 4.40194 4.84947 4.90238 5.05190 5.16458 5.28509 5.38076 5.42840 5.61506 5.81650 5.94784 5.99055 6.03015 6.17136 6.26962 6.31191 6.37566 6.46643 6.54989 6.74099 6.79734 6.82132 6.98846 7.01510 7.12213 7.48497 7.68836 7.81115 8.16804 8.29405 8.56309 8.99142 9.57695 11.03531 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.003943 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.394654 B = 7098.953476 C = 7611.524591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.029 4.029 3 C -0.096 4.096 4 Br -0.061 7.061 5 C -0.098 4.098 6 C -0.127 4.127 7 C -0.098 4.098 8 C -0.059 4.059 9 C 0.083 3.917 10 N -0.527 5.527 11 C 0.036 3.964 12 C 0.212 3.788 13 H -0.002 1.002 14 C -0.134 4.134 15 C -0.502 4.502 16 H 0.064 0.936 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.284 1.284 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.007 0.993 35 H 0.036 0.964 36 H 0.085 0.915 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 15.041 6.405 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.175 4.175 4 Br 0.025 6.975 5 C -0.118 4.118 6 C -0.146 4.146 7 C -0.117 4.117 8 C -0.060 4.060 9 C -0.045 4.045 10 N -0.252 5.252 11 C -0.112 4.112 12 C 0.106 3.894 13 H 0.015 0.985 14 C -0.192 4.192 15 C -0.540 4.540 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.210 1.210 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.209 15.895 6.249 18.949 hybrid contribution 0.440 -1.354 -0.658 1.568 sum 8.649 14.541 5.591 17.819 Atomic orbital electron populations 1.20998 0.89934 1.02804 1.03975 1.19668 0.96982 0.90591 0.95933 1.21668 0.94520 0.90869 1.10446 1.96611 1.76267 1.26891 1.97767 1.20955 0.91978 0.98740 1.00093 1.21007 0.99704 0.91894 1.01947 1.21216 0.93837 0.98178 0.98448 1.19885 0.93173 0.94958 0.98004 1.21159 0.97968 0.91349 0.94002 1.62161 1.14652 1.43342 1.05028 1.22241 0.92406 0.97411 0.99173 1.19270 0.88474 0.85246 0.96395 0.98454 1.21876 1.00623 1.01967 0.94690 1.21175 1.26109 1.14538 0.92198 0.91790 1.24919 0.96168 0.95980 0.97128 1.69896 1.32555 1.20202 1.30598 0.86482 0.78456 0.77947 0.84774 1.19753 1.21186 1.21019 0.89531 0.90424 0.91695 0.85641 0.85670 0.85870 0.95130 0.89358 0.97208 0.90429 0.93807 0.97374 0.94480 0.89634 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.15 36.00 0.33 -1.49 16 2 C -0.03 -0.45 5.88 -104.60 -0.62 -1.06 16 3 C -0.10 -1.33 6.22 -39.51 -0.25 -1.57 16 4 Br -0.06 -0.75 31.79 -68.01 -2.16 -2.91 16 5 C -0.10 -1.20 9.79 -39.56 -0.39 -1.59 16 6 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 7 C -0.10 -1.33 8.73 -39.58 -0.35 -1.67 16 8 C -0.06 -0.92 4.57 -104.63 -0.48 -1.39 16 9 C 0.08 1.47 4.30 -4.98 -0.02 1.44 16 10 N -0.53 -10.92 4.61 -237.73 -1.10 -12.02 16 11 C 0.04 0.71 8.99 60.06 0.54 1.25 16 12 C 0.21 5.17 2.06 -68.86 -0.14 5.03 16 13 H 0.00 -0.06 8.14 -51.92 -0.42 -0.48 16 14 C -0.13 -3.13 8.76 37.16 0.33 -2.80 16 15 C -0.50 -13.40 7.88 -34.44 -0.27 -13.67 16 16 H 0.06 1.72 6.41 -52.49 -0.34 1.39 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -25.01 11.32 55.43 0.63 -24.39 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.08 1.21 6.12 -51.93 -0.32 0.89 16 25 H 0.06 0.87 6.65 -51.93 -0.35 0.53 16 26 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.12 1.52 8.04 -52.49 -0.42 1.09 16 29 H 0.03 0.54 7.98 -51.92 -0.41 0.12 16 30 H 0.09 1.57 4.09 -51.93 -0.21 1.35 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 1.63 6.10 -51.93 -0.32 1.32 16 33 H 0.04 0.77 6.65 -51.93 -0.35 0.42 16 34 H 0.01 0.16 6.20 -51.93 -0.32 -0.17 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -27.52 311.57 -9.78 -37.30 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.02 Total: -0.81 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.80 Total: -17.93 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.47 Total: -36.41 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.16 Total: -2.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.52 -9.78 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090552284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.064 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds