Wall clock time and date at job start Tue Mar 31 2020 10:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46494 * 109.47471 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00050 * 293.97098 * 4 3 2 6 6 H 1.07996 * 120.00488 * 149.28943 * 5 4 3 7 7 C 1.38818 * 120.00047 * 329.29129 * 5 4 3 8 8 N 1.31616 * 119.99693 * 337.22593 * 7 5 4 9 9 Si 1.86795 * 120.00173 * 157.21961 * 7 5 4 10 10 H 1.48504 * 109.47347 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47082 * 120.00322 * 9 7 5 12 12 H 1.48500 * 109.47083 * 240.00442 * 9 7 5 13 13 S 1.65597 * 120.00201 * 113.69301 * 4 3 2 14 14 O 1.42096 * 106.40507 * 203.54390 * 13 4 3 15 15 O 1.42106 * 106.40397 * 336.46154 * 13 4 3 16 16 C 1.76202 * 107.21863 * 89.99937 * 13 4 3 17 17 C 1.35606 * 120.30437 * 115.00142 * 16 13 4 18 18 C 1.40063 * 121.94458 * 179.97438 * 17 16 13 19 19 C 1.35595 * 121.94520 * 359.97438 * 18 17 16 20 20 C 1.40844 * 119.38989 * 0.02562 * 19 18 17 21 21 N 1.31008 * 138.55990 * 180.02562 * 20 19 18 22 22 O 1.21485 * 109.08275 * 179.34836 * 21 20 19 23 23 N 1.21464 * 116.28553 * 0.61941 * 22 21 20 24 24 C 1.31021 * 109.08721 * 359.47547 * 23 22 21 25 25 H 1.09002 * 109.47288 * 60.00026 * 1 2 3 26 26 H 1.09004 * 109.47321 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47191 * 299.99572 * 1 2 3 28 28 H 1.09010 * 109.47000 * 240.00081 * 2 1 3 29 29 H 1.09003 * 109.47207 * 120.00522 * 2 1 3 30 30 H 1.09001 * 109.46778 * 59.99575 * 3 2 1 31 31 H 1.09003 * 109.47435 * 300.00382 * 3 2 1 32 32 H 0.97001 * 120.00197 * 179.97438 * 8 7 5 33 33 H 1.08004 * 119.02224 * 359.97438 * 17 16 13 34 34 H 1.08004 * 119.02377 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.30300 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1901 0.9606 1.0826 6 1 5.1564 0.4975 0.9481 7 6 3.6425 1.0671 2.3538 8 7 2.7316 1.9838 2.6031 9 14 4.1985 -0.0904 3.7103 10 1 5.2246 -1.0219 3.1766 11 1 4.7792 0.6980 4.8268 12 1 3.0341 -0.8673 4.2062 13 16 4.3324 2.0190 -1.3141 14 8 5.6153 1.4090 -1.2796 15 8 3.4503 1.9114 -2.4230 16 6 4.5932 3.7417 -1.0513 17 6 5.8498 4.2278 -0.8975 18 6 6.0966 5.5904 -0.6875 19 6 5.0931 6.5003 -0.6265 20 6 3.7604 6.0705 -0.7773 21 7 2.5567 6.5877 -0.7859 22 8 1.7460 5.7037 -0.9787 23 7 2.1935 4.5816 -1.1048 24 6 3.4991 4.6272 -1.0047 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.3486 2.0581 3.4913 33 1 6.6848 3.5440 -0.9383 34 1 7.1165 5.9264 -0.5714 35 1 5.3138 7.5448 -0.4629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:36 Heat of formation + Delta-G solvation = 69.274766 kcal Electronic energy + Delta-G solvation = -24764.859769 eV Core-core repulsion = 21088.948977 eV Total energy + Delta-G solvation = -3675.910792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.20701 -38.31601 -36.49704 -35.86827 -34.47491 -34.37759 -32.80543 -32.70154 -31.23243 -30.91730 -26.11581 -25.48402 -24.49168 -23.92699 -21.40256 -20.59249 -19.04362 -18.50525 -18.35437 -17.73530 -17.04874 -16.64543 -16.11280 -15.17527 -14.96107 -14.65116 -14.23048 -13.85792 -13.46306 -12.92460 -12.74396 -12.69058 -12.47848 -12.02949 -11.93115 -11.68339 -11.62286 -11.44285 -11.34497 -11.13795 -11.05252 -10.75236 -10.67534 -10.62165 -10.48088 -10.13479 -9.88017 -9.67194 -9.53303 -9.50355 -8.49609 -8.03908 -6.71747 -4.25176 0.15370 1.48297 1.62987 2.20492 2.98235 3.06572 3.13195 3.44388 3.52740 3.82441 3.85187 4.15996 4.39977 4.56782 4.89785 4.91585 5.08489 5.14079 5.50092 5.62853 5.78735 5.82464 5.85836 6.03712 6.11614 6.20985 6.32011 6.37743 6.55495 6.63656 6.70338 6.78694 6.86450 7.05082 7.30095 7.48585 8.12205 8.47972 8.85400 8.97076 10.14870 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.006803 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.785702 B = 4114.769283 C = 4428.030204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.114 3.886 4 N -0.786 5.786 5 C -0.224 4.224 6 H 0.118 0.882 7 C 0.036 3.964 8 N -0.807 5.807 9 Si 0.925 3.075 10 H -0.258 1.258 11 H -0.276 1.276 12 H -0.273 1.273 13 S 2.495 3.505 14 O -0.984 6.984 15 O -0.990 6.990 16 C -0.589 4.589 17 C -0.007 4.007 18 C -0.097 4.097 19 C -0.054 4.054 20 C 0.004 3.996 21 N -0.357 5.357 22 O 0.370 5.630 23 N -0.331 5.331 24 C 0.084 3.916 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.279 0.721 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 4.033 -0.033 4.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.012 4.012 4 N -0.608 5.608 5 C -0.377 4.377 6 H 0.135 0.865 7 C -0.180 4.180 8 N -0.445 5.445 9 Si 0.749 3.251 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.198 1.198 13 S 2.594 3.406 14 O -0.974 6.974 15 O -0.979 6.979 16 C -0.666 4.666 17 C -0.030 4.030 18 C -0.119 4.119 19 C -0.075 4.075 20 C -0.149 4.149 21 N -0.081 5.081 22 O 0.134 5.866 23 N -0.051 5.051 24 C -0.070 4.070 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.579 4.098 -1.019 4.262 hybrid contribution 1.132 0.409 1.120 1.644 sum 1.712 4.507 0.101 4.822 Atomic orbital electron populations 1.21688 0.96554 1.00597 1.01508 1.21659 0.94333 0.98177 1.01953 1.21606 0.78930 0.96774 1.03883 1.54243 1.12674 1.59068 1.34809 1.20130 1.06219 1.26304 0.85011 0.86467 1.25914 0.96683 0.96494 0.98892 1.69948 1.24120 1.27616 1.22772 0.85867 0.79486 0.80126 0.79627 1.18138 1.20159 1.19796 1.13514 0.74114 0.74161 0.78795 1.93322 1.41917 1.74275 1.87860 1.93372 1.64756 1.86020 1.53791 1.31596 0.94209 1.30308 1.10493 1.20902 0.96191 0.95518 0.90417 1.21159 0.99573 0.93237 0.97968 1.19940 0.87124 1.00555 0.99883 1.22897 0.94772 0.92417 1.04796 1.75097 0.99727 1.14873 1.18364 1.85343 1.34001 1.08324 1.58964 1.75312 1.10448 1.01777 1.17591 1.21850 0.90080 0.93802 1.01303 0.93079 0.93466 0.92862 0.92917 0.91396 0.87883 0.91441 0.91079 0.82956 0.83908 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.12 -2.41 5.97 -26.74 -0.16 -2.57 16 3 C 0.11 2.55 5.12 -4.05 -0.02 2.53 16 4 N -0.79 -18.62 2.98 -59.91 -0.18 -18.80 16 5 C -0.22 -5.28 8.66 -15.06 -0.13 -5.41 16 6 H 0.12 2.74 7.34 -52.49 -0.39 2.35 16 7 C 0.04 0.81 4.62 -17.43 -0.08 0.73 16 8 N -0.81 -18.68 11.08 55.49 0.62 -18.07 16 9 Si 0.92 17.44 29.61 -169.99 -5.03 12.40 16 10 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 12 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 13 S 2.49 59.52 5.60 -107.50 -0.60 58.92 16 14 O -0.98 -24.38 15.78 -57.17 -0.90 -25.29 16 15 O -0.99 -25.54 16.59 -57.17 -0.95 -26.48 16 16 C -0.59 -12.66 5.91 -39.54 -0.23 -12.90 16 17 C -0.01 -0.13 9.45 -39.84 -0.38 -0.50 16 18 C -0.10 -1.36 9.90 -39.84 -0.39 -1.76 16 19 C -0.05 -0.81 10.08 -39.54 -0.40 -1.20 16 20 C 0.00 0.08 7.76 -83.03 -0.64 -0.57 16 21 N -0.36 -6.57 12.29 31.88 0.39 -6.18 16 22 O 0.37 7.03 11.67 26.94 0.31 7.35 16 23 N -0.33 -7.05 12.01 31.88 0.38 -6.67 16 24 C 0.08 1.79 7.43 -83.03 -0.62 1.18 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.07 1.37 7.40 -51.93 -0.38 0.98 16 30 H 0.10 2.41 5.55 -51.93 -0.29 2.13 16 31 H 0.07 1.54 6.75 -51.93 -0.35 1.19 16 32 H 0.28 5.99 8.31 -40.82 -0.34 5.65 16 33 H 0.15 2.49 7.24 -52.48 -0.38 2.11 16 34 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -28.94 315.01 -7.36 -36.30 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.46 Total: 4.28 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.69 Total: -22.50 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 1.21 Total: -49.71 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.54 Total: -44.42 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 59.52 SS G_CDS: -0.60 Total: 58.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.94 -7.36 -36.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.571 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds