Wall clock time and date at job start Tue Mar 31 2020 09:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 120.00627 * 2 1 4 4 C 1.38220 * 120.01117 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99015 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47103 * 90.00282 * 5 4 3 7 7 C 1.46895 * 110.99830 * 66.04272 * 6 5 4 8 8 C 1.46897 * 110.99786 * 190.00145 * 6 5 4 9 9 H 1.09001 * 109.47212 * 54.99704 * 8 6 5 10 10 C 1.53003 * 109.46961 * 294.99442 * 8 6 5 11 11 C 1.50703 * 109.47056 * 175.00055 * 8 6 5 12 12 H 1.08003 * 119.99584 * 359.97438 * 11 8 6 13 13 C 1.37871 * 120.00021 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00222 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 120.00078 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.46781 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47259 * 119.99500 * 15 13 11 18 18 H 1.48497 * 109.47037 * 239.99772 * 15 13 11 19 19 C 1.38264 * 120.01774 * 359.97438 * 4 3 2 20 20 C 1.38201 * 120.01260 * 0.02562 * 19 4 3 21 21 C 1.38305 * 120.00214 * 179.97438 * 2 1 3 22 22 Br 1.89094 * 120.01155 * 359.74619 * 21 2 1 23 23 H 1.08994 * 109.46968 * 270.02058 * 1 2 3 24 24 H 1.09003 * 109.46617 * 30.02007 * 1 2 3 25 25 H 1.09000 * 109.46668 * 150.01755 * 1 2 3 26 26 H 1.08002 * 119.99263 * 359.97438 * 3 2 1 27 27 H 1.09007 * 109.46916 * 209.99943 * 5 4 3 28 28 H 1.08993 * 109.46962 * 330.00231 * 5 4 3 29 29 H 1.09004 * 109.47400 * 60.00626 * 7 6 5 30 30 H 1.09004 * 109.46972 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47631 * 300.00035 * 7 6 5 32 32 H 1.09002 * 109.47045 * 180.02562 * 10 8 6 33 33 H 1.09001 * 109.47372 * 300.00164 * 10 8 6 34 34 H 1.09002 * 109.47052 * 60.00443 * 10 8 6 35 35 H 0.97001 * 120.00388 * 180.02562 * 14 13 11 36 36 H 1.08002 * 119.99516 * 179.97438 * 19 4 3 37 37 H 1.08001 * 120.00207 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3337 2.5025 0.0000 6 7 4.5780 2.9275 1.3848 7 6 5.4886 1.9989 2.0676 8 6 5.0957 4.3015 1.4302 9 1 4.4116 4.9652 0.9014 10 6 6.4717 4.3503 0.7627 11 6 5.2176 4.7452 2.8652 12 1 4.9380 4.0738 3.6636 13 6 5.6851 6.0086 3.1588 14 7 6.0252 6.8263 2.1866 15 14 5.8355 6.5589 4.9376 16 1 5.3917 5.4616 5.8344 17 1 7.2507 6.8982 5.2328 18 1 4.9832 7.7544 5.1596 19 6 4.2724 0.0001 0.0016 20 6 3.5821 -1.1972 0.0016 21 6 2.1986 -1.1977 0.0005 22 35 1.2536 -2.8355 0.0085 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8899 -0.5142 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6583 2.1324 -0.0004 27 1 5.2864 2.3720 -0.5135 28 1 3.7447 3.2616 -0.5146 29 1 6.4409 1.9687 1.5382 30 1 5.6519 2.3368 3.0910 31 1 5.0483 1.0018 2.0806 32 1 6.8561 5.3697 0.7968 33 1 7.1558 3.6865 1.2915 34 1 6.3836 4.0293 -0.2752 35 1 6.3544 7.7150 2.3931 36 1 5.3524 0.0006 0.0016 37 1 4.1226 -2.1322 0.0029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:52 Heat of formation + Delta-G solvation = 25.989139 kcal Electronic energy + Delta-G solvation = -17954.898811 eV Core-core repulsion = 15164.179964 eV Total energy + Delta-G solvation = -2790.718846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59686 -37.12012 -33.62152 -32.48133 -31.99404 -30.02800 -28.44344 -26.90708 -26.43070 -25.18100 -23.59603 -22.02560 -20.46204 -19.13993 -16.32438 -16.09682 -15.74413 -15.28596 -14.74122 -14.37469 -13.89815 -13.60946 -13.50390 -13.06712 -12.71039 -12.49479 -12.28515 -12.18530 -11.60541 -11.35981 -11.15506 -11.09553 -10.97452 -10.81236 -10.64037 -10.58786 -10.44274 -10.14934 -10.04268 -9.83940 -8.92405 -8.70659 -8.43418 -8.41009 -7.19725 -6.03628 -4.07330 1.19229 1.39975 1.64123 3.28633 3.36768 3.41348 3.67705 4.40496 4.76002 4.82577 4.95537 5.21079 5.29105 5.35423 5.40516 5.54777 5.58902 5.68561 5.79914 5.96807 6.10333 6.16734 6.23624 6.28220 6.36501 6.42574 6.63889 6.75094 6.81646 6.87088 6.94490 7.08066 7.43839 7.68229 7.80238 8.07192 8.34108 8.55002 8.98827 9.57951 11.03527 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.032280 B = 0.003067 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.196906 B = 9127.665597 C = 9281.630260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.097 4.097 4 C -0.038 4.038 5 C 0.084 3.916 6 N -0.527 5.527 7 C 0.031 3.969 8 C 0.210 3.790 9 H 0.040 0.960 10 C -0.173 4.173 11 C -0.499 4.499 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.116 4.116 20 C -0.090 4.090 21 C -0.102 4.102 22 Br -0.065 7.065 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.016 0.984 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.007 0.993 35 H 0.260 0.740 36 H 0.127 0.873 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 -17.634 -6.894 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.061 4.061 3 C -0.116 4.116 4 C -0.039 4.039 5 C -0.044 4.044 6 N -0.251 5.251 7 C -0.117 4.117 8 C 0.104 3.896 9 H 0.058 0.942 10 C -0.232 4.232 11 C -0.538 4.538 12 H 0.082 0.918 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.136 4.136 20 C -0.110 4.110 21 C -0.181 4.181 22 Br 0.021 6.979 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.182 -18.053 -6.658 21.320 hybrid contribution 1.270 0.763 0.530 1.573 sum -7.912 -17.291 -6.128 19.978 Atomic orbital electron populations 1.20964 0.90616 1.03307 1.03037 1.19759 0.96373 0.91574 0.98390 1.20949 0.93665 0.97072 0.99902 1.20166 0.93829 0.95421 0.94435 1.21094 0.97701 0.92562 0.92998 1.62402 1.47097 1.04607 1.10965 1.22307 0.93692 0.95255 1.00485 1.19351 0.90737 0.82653 0.96843 0.94220 1.22413 1.01319 1.03949 0.95527 1.21149 1.42238 0.98848 0.91527 0.91849 1.24919 0.95491 0.96549 0.97302 1.69889 1.44783 1.07657 1.31066 0.86472 0.77525 0.78642 0.84972 1.19733 1.21178 1.21041 1.21075 1.00044 0.91422 1.01019 1.20977 0.91916 0.98740 0.99324 1.21572 0.94566 0.90545 1.11392 1.96600 1.76006 1.27494 1.97839 0.90566 0.91036 0.90880 0.84998 0.94360 0.90427 0.96549 0.90680 0.93667 0.89292 0.95081 0.97373 0.93047 0.85553 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.55 36.01 0.34 -0.94 16 2 C -0.06 -0.77 5.88 -104.59 -0.62 -1.38 16 3 C -0.10 -1.38 9.36 -39.59 -0.37 -1.75 16 4 C -0.04 -0.57 4.88 -104.62 -0.51 -1.08 16 5 C 0.08 1.47 4.56 -4.97 -0.02 1.45 16 6 N -0.53 -10.96 4.73 -237.72 -1.13 -12.09 16 7 C 0.03 0.60 8.37 60.06 0.50 1.10 16 8 C 0.21 5.13 2.34 -68.86 -0.16 4.97 16 9 H 0.04 1.06 8.03 -51.93 -0.42 0.65 16 10 C -0.17 -4.06 8.28 37.16 0.31 -3.76 16 11 C -0.50 -13.39 7.88 -34.44 -0.27 -13.66 16 12 H 0.06 1.72 6.77 -52.48 -0.36 1.36 16 13 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 14 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.12 -1.60 7.97 -39.59 -0.32 -1.91 16 20 C -0.09 -1.14 9.79 -39.55 -0.39 -1.53 16 21 C -0.10 -1.31 6.22 -39.52 -0.25 -1.55 16 22 Br -0.06 -0.71 31.79 -68.01 -2.16 -2.88 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.07 0.72 6.65 -51.93 -0.35 0.37 16 26 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.04 0.66 6.88 -51.93 -0.36 0.30 16 28 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 29 H 0.02 0.31 6.51 -51.93 -0.34 -0.03 16 30 H 0.07 1.58 6.42 -51.93 -0.33 1.24 16 31 H 0.04 0.78 6.17 -51.93 -0.32 0.46 16 32 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 33 H 0.03 0.71 6.47 -51.93 -0.34 0.37 16 34 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.13 1.61 8.03 -52.49 -0.42 1.19 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -27.58 312.43 -9.94 -37.52 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.13 Total: -0.36 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.84 Total: -18.56 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.50 Total: -36.52 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.16 Total: -2.88 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.58 -9.94 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.509 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds