Wall clock time and date at job start Tue Mar 31 2020 09:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38261 * 119.99082 * 2 1 4 4 C 1.38213 * 120.02301 * 179.97438 * 3 2 1 5 5 C 1.38247 * 120.00739 * 0.04341 * 4 3 2 6 6 C 1.50693 * 120.00397 * 180.25463 * 5 4 3 7 7 N 1.46894 * 109.47378 * 105.82357 * 6 5 4 8 8 C 1.46896 * 111.00185 * 288.29882 * 7 6 5 9 9 C 1.46902 * 111.00284 * 164.34489 * 7 6 5 10 10 H 1.08995 * 109.47299 * 310.00329 * 9 7 6 11 11 C 1.53007 * 109.47061 * 70.00239 * 9 7 6 12 12 C 1.50705 * 109.47298 * 189.99876 * 9 7 6 13 13 H 1.08003 * 119.99826 * 0.02562 * 12 9 7 14 14 C 1.37878 * 120.00018 * 179.97438 * 12 9 7 15 15 N 1.31517 * 119.99955 * 180.02562 * 14 12 9 16 16 Si 1.86797 * 119.99926 * 0.02562 * 14 12 9 17 17 H 1.48504 * 109.46886 * 89.99907 * 16 14 12 18 18 H 1.48498 * 109.47189 * 209.99705 * 16 14 12 19 19 H 1.48497 * 109.47402 * 329.99894 * 16 14 12 20 20 C 1.38304 * 119.98871 * 359.97438 * 5 4 3 21 21 Br 1.89096 * 120.00755 * 180.02562 * 20 5 4 22 22 C 1.38187 * 119.99801 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47140 * 269.97252 * 1 2 3 24 24 H 1.08997 * 109.47600 * 29.98275 * 1 2 3 25 25 H 1.09000 * 109.46712 * 149.98206 * 1 2 3 26 26 H 1.08007 * 119.99308 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.99846 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47082 * 225.82207 * 6 5 4 29 29 H 1.09003 * 109.47754 * 345.81970 * 6 5 4 30 30 H 1.09008 * 109.47038 * 65.52809 * 8 7 6 31 31 H 1.08997 * 109.47506 * 185.52785 * 8 7 6 32 32 H 1.08998 * 109.47292 * 305.53184 * 8 7 6 33 33 H 1.08995 * 109.47101 * 180.02562 * 11 9 7 34 34 H 1.09003 * 109.46931 * 299.99959 * 11 9 7 35 35 H 1.08995 * 109.46991 * 59.99901 * 11 9 7 36 36 H 0.96992 * 119.99751 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.00528 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1983 0.0005 5 6 4.2723 0.0015 0.0002 6 6 5.7792 0.0024 0.0065 7 7 6.2635 -0.3786 1.3400 8 6 6.0283 0.6968 2.3127 9 6 7.6845 -0.7490 1.2981 10 1 7.8488 -1.4692 0.4967 11 6 8.5298 0.5004 1.0421 12 6 8.0825 -1.3635 2.6154 13 1 7.3528 -1.4687 3.4046 14 6 9.3780 -1.7922 2.8126 15 7 9.7253 -2.3289 3.9620 16 14 10.6400 -1.6107 1.4474 17 1 11.3193 -0.2961 1.5728 18 1 11.6445 -2.6991 1.5539 19 1 9.9594 -1.6925 0.1301 20 6 3.5814 -1.1966 -0.0002 21 35 4.5275 -2.8339 0.0000 22 6 2.1979 -1.1968 -0.0005 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6578 2.1327 0.0004 27 1 4.1197 2.1339 0.0010 28 1 6.1461 -0.7115 -0.7309 29 1 6.1431 0.9997 -0.2409 30 1 4.9557 0.8363 2.4477 31 1 6.4829 0.4297 3.2666 32 1 6.4717 1.6223 1.9454 33 1 9.5841 0.2256 1.0105 34 1 8.2419 0.9449 0.0893 35 1 8.3656 1.2207 1.8434 36 1 10.6367 -2.6301 4.1008 37 1 1.6580 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:54 Heat of formation + Delta-G solvation = 36.658960 kcal Electronic energy + Delta-G solvation = -18273.954795 eV Core-core repulsion = 15483.698627 eV Total energy + Delta-G solvation = -2790.256168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.57354 -37.28375 -33.69586 -32.30448 -31.80612 -29.84539 -29.01323 -28.05962 -25.61603 -25.18955 -23.06111 -22.46140 -20.58610 -19.22565 -16.63210 -16.05659 -15.74035 -15.20493 -14.82481 -14.44352 -13.88422 -13.80544 -13.36342 -13.25858 -12.86410 -12.57757 -12.33647 -12.20835 -12.16835 -11.59505 -11.26525 -11.21876 -11.09003 -10.89500 -10.73681 -10.40010 -10.24624 -9.98966 -9.63099 -9.46867 -9.02052 -8.67569 -8.54009 -8.31981 -7.29313 -6.01678 -3.98579 1.24245 1.34969 2.06839 3.27790 3.38683 3.40762 3.65389 4.43373 4.72616 4.78333 4.91727 5.05713 5.21154 5.26342 5.32028 5.46630 5.50335 5.66827 5.72395 5.86547 5.96533 6.10365 6.14504 6.21361 6.29341 6.31274 6.32228 6.49018 6.55946 6.58731 6.75349 6.90182 6.91466 7.21732 7.68775 7.96969 8.11344 8.71201 9.07749 9.60854 11.11639 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.005323 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.187580 B = 5258.524555 C = 5923.958889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.108 4.108 5 C -0.044 4.044 6 C 0.081 3.919 7 N -0.507 5.507 8 C 0.033 3.967 9 C 0.184 3.816 10 H 0.040 0.960 11 C -0.186 4.186 12 C -0.494 4.494 13 H 0.082 0.918 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.883 3.117 17 H -0.282 1.282 18 H -0.297 1.297 19 H -0.268 1.268 20 C -0.063 4.063 21 Br -0.031 7.031 22 C -0.098 4.098 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.014 0.986 33 H 0.044 0.956 34 H 0.026 0.974 35 H 0.056 0.944 36 H 0.263 0.737 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 4.944 -10.554 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.128 4.128 5 C -0.046 4.046 6 C -0.047 4.047 7 N -0.230 5.230 8 C -0.115 4.115 9 C 0.076 3.924 10 H 0.058 0.942 11 C -0.245 4.245 12 C -0.532 4.532 13 H 0.100 0.900 14 C -0.132 4.132 15 N -0.540 5.540 16 Si 0.714 3.286 17 H -0.209 1.209 18 H -0.225 1.225 19 H -0.193 1.193 20 C -0.144 4.144 21 Br 0.055 6.945 22 C -0.118 4.118 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.957 3.804 -10.289 19.364 hybrid contribution 1.155 1.255 -0.871 1.915 sum -14.802 5.058 -11.161 19.216 Atomic orbital electron populations 1.20752 0.90985 1.02614 1.02354 1.19811 0.96006 0.92737 1.00805 1.21031 0.94073 0.97457 1.00444 1.21038 0.94025 0.97286 1.00442 1.19887 0.96526 0.91474 0.96744 1.21167 0.89322 0.99790 0.94470 1.62133 1.20192 1.37411 1.03238 1.22308 0.99318 0.91804 0.98107 1.19794 0.81872 0.91788 0.98925 0.94221 1.22853 1.01017 1.01737 0.98913 1.20908 0.95964 1.38323 0.98035 0.89955 1.24892 0.98096 0.95029 0.95168 1.69878 1.18829 1.41864 1.23408 0.86940 0.81624 0.76577 0.83472 1.20891 1.22517 1.19339 1.21742 0.94156 0.92628 1.05830 1.96771 1.75859 1.24607 1.97241 1.20955 0.92108 0.98251 1.00447 0.91156 0.91618 0.91588 0.85972 0.85722 0.89898 0.94479 0.93658 0.89978 0.96801 0.93757 0.95483 0.92502 0.92751 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -1.05 5.88 -104.63 -0.62 -1.67 16 3 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.41 9.45 -39.59 -0.37 -1.79 16 5 C -0.04 -0.68 4.66 -104.60 -0.49 -1.16 16 6 C 0.08 1.39 3.80 -4.98 -0.02 1.37 16 7 N -0.51 -10.33 4.33 -237.73 -1.03 -11.36 16 8 C 0.03 0.63 8.35 60.06 0.50 1.13 16 9 C 0.18 4.29 1.89 -68.86 -0.13 4.16 16 10 H 0.04 0.98 6.92 -51.93 -0.36 0.62 16 11 C -0.19 -4.03 7.95 37.16 0.30 -3.73 16 12 C -0.49 -13.69 8.41 -34.44 -0.29 -13.98 16 13 H 0.08 2.51 7.42 -52.48 -0.39 2.12 16 14 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 15 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 16 Si 0.88 22.00 24.37 -169.99 -4.14 17.86 16 17 H -0.28 -6.86 6.87 56.52 0.39 -6.47 16 18 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 20 C -0.06 -0.98 6.22 -39.52 -0.25 -1.22 16 21 Br -0.03 -0.52 31.89 -68.01 -2.17 -2.69 16 22 C -0.10 -1.28 9.44 -39.56 -0.37 -1.65 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 27 H 0.12 1.43 7.99 -52.49 -0.42 1.01 16 28 H 0.08 1.47 7.13 -51.93 -0.37 1.10 16 29 H 0.04 0.60 6.99 -51.93 -0.36 0.24 16 30 H 0.04 0.79 7.46 -51.92 -0.39 0.41 16 31 H 0.08 1.76 6.65 -51.93 -0.35 1.41 16 32 H 0.01 0.24 6.67 -51.93 -0.35 -0.10 16 33 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 34 H 0.03 0.50 7.06 -51.93 -0.37 0.14 16 35 H 0.06 1.20 6.54 -51.93 -0.34 0.86 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -30.03 309.13 -8.91 -38.94 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.15 Total: -1.81 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -1.86 Total: -18.84 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.26 Total: -38.11 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.17 Total: -2.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.03 -8.91 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.600 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds