Wall clock time and date at job start Tue Mar 31 2020 09:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38268 * 119.99722 * 2 1 4 4 C 1.38221 * 120.01959 * 180.27760 * 3 2 1 5 5 C 1.38245 * 120.00965 * 359.48718 * 4 3 2 6 6 C 1.50703 * 120.00202 * 180.27890 * 5 4 3 7 7 N 1.46901 * 109.46751 * 256.56651 * 6 5 4 8 8 C 1.46895 * 111.00509 * 75.35044 * 7 6 5 9 9 C 1.46901 * 110.99677 * 199.30386 * 7 6 5 10 10 H 1.09000 * 109.47554 * 54.99712 * 9 7 6 11 11 C 1.53004 * 109.46966 * 294.99874 * 9 7 6 12 12 C 1.50700 * 109.47072 * 175.00130 * 9 7 6 13 13 H 1.07995 * 119.99967 * 359.97438 * 12 9 7 14 14 C 1.37882 * 119.99740 * 179.97438 * 12 9 7 15 15 N 1.31507 * 120.00315 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99641 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47419 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47077 * 119.99981 * 16 14 12 19 19 H 1.48494 * 109.47107 * 239.99926 * 16 14 12 20 20 C 1.38297 * 119.99051 * 0.26139 * 5 4 3 21 21 Br 1.89099 * 120.01175 * 180.02562 * 20 5 4 22 22 C 1.38204 * 119.99621 * 179.76709 * 2 1 3 23 23 H 1.08993 * 109.47332 * 270.23106 * 1 2 3 24 24 H 1.09003 * 109.46936 * 30.23396 * 1 2 3 25 25 H 1.09006 * 109.47332 * 150.23069 * 1 2 3 26 26 H 1.07997 * 119.98720 * 0.04115 * 3 2 1 27 27 H 1.08002 * 119.99127 * 179.77010 * 4 3 2 28 28 H 1.08992 * 109.47196 * 16.56345 * 6 5 4 29 29 H 1.08993 * 109.46879 * 136.56860 * 6 5 4 30 30 H 1.09004 * 109.47142 * 54.03829 * 8 7 6 31 31 H 1.08993 * 109.47801 * 174.04527 * 8 7 6 32 32 H 1.09007 * 109.46982 * 294.05029 * 8 7 6 33 33 H 1.09000 * 109.46852 * 300.00268 * 11 9 7 34 34 H 1.09000 * 109.47063 * 60.00287 * 11 9 7 35 35 H 1.09004 * 109.47187 * 180.02562 * 11 9 7 36 36 H 0.96999 * 120.00437 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.00315 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1980 -0.0058 5 6 4.2723 0.0012 -0.0009 6 6 5.7794 0.0020 -0.0009 7 7 6.2692 -0.3250 -1.3467 8 6 6.1170 0.8195 -2.2549 9 6 7.6652 -0.7801 -1.3026 10 1 7.7531 -1.6162 -0.6088 11 6 8.5613 0.3680 -0.8336 12 6 8.0933 -1.2217 -2.6784 13 1 7.3977 -1.1698 -3.5029 14 6 9.3730 -1.6918 -2.8844 15 7 10.2201 -1.7545 -1.8804 16 14 9.9033 -2.2399 -4.5896 17 1 8.7732 -2.0704 -5.5379 18 1 11.0538 -1.4154 -5.0390 19 1 10.3049 -3.6689 -4.5477 20 6 3.5814 -1.1968 0.0044 21 35 4.5272 -2.8342 0.0118 22 6 2.1979 -1.1969 0.0049 23 1 -0.3633 0.0041 1.0276 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3634 -0.8921 -0.5103 26 1 1.6580 2.1326 0.0007 27 1 4.1199 2.1336 -0.0095 28 1 6.1421 0.9884 0.2881 29 1 6.1430 -0.7411 0.7087 30 1 6.5985 1.6953 -1.8196 31 1 6.5823 0.5876 -3.2128 32 1 5.0572 1.0251 -2.4059 33 1 8.4734 1.2041 -1.5274 34 1 8.2517 0.6874 0.1615 35 1 9.5973 0.0305 -0.8013 36 1 11.1203 -2.0856 -2.0253 37 1 1.6579 -2.1322 0.0082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:55 Heat of formation + Delta-G solvation = 27.636346 kcal Electronic energy + Delta-G solvation = -18207.907786 eV Core-core repulsion = 15417.260368 eV Total energy + Delta-G solvation = -2790.647418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48468 -37.03726 -33.63031 -32.32635 -31.73668 -29.10948 -28.94041 -27.81364 -25.52535 -25.06603 -23.00307 -22.38903 -20.56980 -19.14400 -16.30759 -15.79793 -15.61923 -15.12769 -14.78770 -14.25393 -13.80069 -13.50020 -13.40691 -13.28575 -12.61344 -12.41656 -12.25219 -12.15497 -11.53225 -11.18227 -11.07161 -11.01565 -10.84489 -10.74454 -10.61057 -10.44562 -10.33722 -9.96894 -9.85974 -9.49400 -8.83637 -8.61516 -8.34295 -8.25465 -7.09995 -5.96532 -3.99131 1.30356 1.41550 2.11248 3.32674 3.40679 3.45444 3.72009 4.46078 4.79506 4.86238 5.03435 5.16040 5.31489 5.34884 5.39351 5.48646 5.57611 5.72150 5.83455 5.95433 6.06439 6.21912 6.32441 6.36435 6.42192 6.54642 6.64874 6.72791 6.87117 6.93118 6.97679 7.17358 7.53320 7.75279 7.88303 8.18300 8.43883 8.64455 9.06999 9.65335 11.10706 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.005061 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.770740 B = 5531.004919 C = 6113.617763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.111 4.111 4 C -0.109 4.109 5 C -0.040 4.040 6 C 0.083 3.917 7 N -0.519 5.519 8 C 0.034 3.966 9 C 0.214 3.786 10 H 0.042 0.958 11 C -0.173 4.173 12 C -0.494 4.494 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.065 4.065 21 Br -0.034 7.034 22 C -0.098 4.098 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.013 0.987 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.006 0.994 35 H 0.088 0.912 36 H 0.258 0.742 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.523 3.155 6.079 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.130 4.130 4 C -0.129 4.129 5 C -0.042 4.042 6 C -0.045 4.045 7 N -0.242 5.242 8 C -0.114 4.114 9 C 0.108 3.892 10 H 0.060 0.940 11 C -0.232 4.232 12 C -0.533 4.533 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.145 4.145 21 Br 0.053 6.947 22 C -0.118 4.118 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.031 0.969 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.241 2.070 5.923 17.411 hybrid contribution 0.733 0.807 -0.605 1.247 sum -15.508 2.877 5.317 16.645 Atomic orbital electron populations 1.20738 0.91050 1.02709 1.02125 1.19794 0.95941 0.92748 1.01144 1.21031 0.94100 0.97409 1.00439 1.21047 0.93967 0.97375 1.00482 1.19986 0.96902 0.91350 0.95972 1.21119 0.88792 1.00132 0.94450 1.62285 1.24432 1.32449 1.05070 1.22267 0.98795 0.91647 0.98707 1.19324 0.79801 0.92593 0.97485 0.94011 1.22435 1.05636 0.99437 0.95696 1.21145 0.96642 1.41233 0.94234 0.91899 1.24901 0.96638 0.95931 0.96790 1.69891 1.05923 1.47321 1.30328 0.86512 0.78430 0.78230 0.84661 1.19766 1.21281 1.21132 1.21734 0.94100 0.92557 1.06147 1.96755 1.75943 1.24763 1.97279 1.20944 0.92111 0.98189 1.00535 0.91349 0.91607 0.91585 0.86039 0.85745 0.94526 0.89940 0.96901 0.90443 0.94176 0.95236 0.97543 0.89370 0.93166 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.10 -1.13 5.88 -104.63 -0.62 -1.74 16 3 C -0.11 -1.33 9.70 -39.58 -0.38 -1.71 16 4 C -0.11 -1.51 9.39 -39.59 -0.37 -1.88 16 5 C -0.04 -0.64 4.86 -104.60 -0.51 -1.15 16 6 C 0.08 1.54 3.57 -4.97 -0.02 1.52 16 7 N -0.52 -11.05 4.52 -237.73 -1.07 -12.13 16 8 C 0.03 0.68 8.51 60.06 0.51 1.19 16 9 C 0.21 5.31 2.31 -68.86 -0.16 5.15 16 10 H 0.04 1.15 7.96 -51.93 -0.41 0.74 16 11 C -0.17 -4.15 8.32 37.16 0.31 -3.84 16 12 C -0.49 -13.43 7.80 -34.44 -0.27 -13.70 16 13 H 0.06 1.73 6.82 -52.49 -0.36 1.38 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 15 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.07 -1.04 6.22 -39.52 -0.25 -1.29 16 21 Br -0.03 -0.58 31.97 -68.01 -2.17 -2.75 16 22 C -0.10 -1.32 9.44 -39.55 -0.37 -1.70 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.12 1.55 8.01 -52.49 -0.42 1.13 16 28 H 0.04 0.65 7.05 -51.93 -0.37 0.29 16 29 H 0.08 1.59 7.00 -51.93 -0.36 1.23 16 30 H 0.01 0.24 6.68 -51.93 -0.35 -0.10 16 31 H 0.08 1.67 6.28 -51.93 -0.33 1.34 16 32 H 0.04 0.72 7.53 -51.93 -0.39 0.33 16 33 H 0.03 0.68 6.61 -51.93 -0.34 0.34 16 34 H 0.01 0.12 6.99 -51.93 -0.36 -0.24 16 35 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 315.71 15.07 4.76 4.76 Total: -1.00 -28.54 315.71 -9.99 -38.53 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.25 Total: -1.82 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.86 Total: -18.22 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.45 Total: -36.98 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.17 Total: -2.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.54 -9.99 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.169 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds