Wall clock time and date at job start Tue Mar 31 2020 09:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38237 * 119.99628 * 2 1 4 4 C 1.38306 * 119.99013 * 180.02562 * 3 2 1 5 5 Br 1.89109 * 120.00786 * 179.97438 * 4 3 2 6 6 C 1.38340 * 119.98174 * 359.72819 * 4 3 2 7 7 C 1.38204 * 119.98890 * 0.52024 * 6 4 3 8 8 C 1.38224 * 119.99410 * 179.97438 * 2 1 3 9 9 C 1.50699 * 119.99170 * 359.97438 * 8 2 1 10 10 N 1.46899 * 109.46948 * 80.02097 * 9 8 2 11 11 C 1.46895 * 111.00171 * 66.04565 * 10 9 8 12 12 C 1.46907 * 110.99616 * 190.00438 * 10 9 8 13 13 H 1.08995 * 109.47291 * 54.99850 * 12 10 9 14 14 C 1.53003 * 109.46636 * 294.99572 * 12 10 9 15 15 C 1.50703 * 109.46803 * 174.99912 * 12 10 9 16 16 H 1.08004 * 119.99873 * 94.96796 * 15 12 10 17 17 C 1.37873 * 120.00009 * 274.96636 * 15 12 10 18 18 N 1.31518 * 119.99777 * 185.11078 * 17 15 12 19 19 Si 1.86798 * 119.99978 * 5.10416 * 17 15 12 20 20 H 1.48502 * 109.46746 * 84.84158 * 19 17 15 21 21 H 1.48505 * 109.47033 * 204.83718 * 19 17 15 22 22 H 1.48496 * 109.47133 * 324.83863 * 19 17 15 23 23 H 1.09004 * 109.47160 * 270.02251 * 1 2 3 24 24 H 1.09003 * 109.47342 * 30.02083 * 1 2 3 25 25 H 1.09000 * 109.47285 * 150.02370 * 1 2 3 26 26 H 1.08001 * 120.00307 * 359.97438 * 3 2 1 27 27 H 1.07995 * 120.00908 * 180.27466 * 6 4 3 28 28 H 1.08001 * 119.99716 * 179.75139 * 7 6 4 29 29 H 1.08994 * 109.46883 * 200.02090 * 9 8 2 30 30 H 1.09001 * 109.47021 * 320.02321 * 9 8 2 31 31 H 1.09006 * 109.47011 * 60.00103 * 11 10 9 32 32 H 1.09006 * 109.47003 * 179.97438 * 11 10 9 33 33 H 1.08991 * 109.47530 * 299.99745 * 11 10 9 34 34 H 1.09005 * 109.46753 * 174.94511 * 14 12 10 35 35 H 1.09000 * 109.47328 * 294.94355 * 14 12 10 36 36 H 1.08992 * 109.47010 * 54.94928 * 14 12 10 37 37 H 0.96998 * 119.99653 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5811 1.1971 -0.0005 5 35 4.5271 2.8346 -0.0013 6 6 4.2723 -0.0013 0.0046 7 6 3.5806 -1.1977 -0.0006 8 6 2.1980 -1.1971 0.0005 9 6 1.4441 -2.5020 0.0017 10 7 0.9909 -2.8069 -1.3620 11 6 2.1318 -3.0631 -2.2510 12 6 0.0560 -3.9401 -1.3649 13 1 -0.7696 -3.7318 -0.6845 14 6 0.7863 -5.2048 -0.9088 15 6 -0.4807 -4.1448 -2.7582 16 1 -0.0129 -4.8613 -3.4172 17 6 -1.5688 -3.4175 -3.1916 18 7 -2.0995 -3.6664 -4.3689 19 14 -2.2895 -2.0786 -2.1065 20 1 -1.5375 -0.8150 -2.3142 21 1 -3.7165 -1.8693 -2.4603 22 1 -2.1873 -2.4871 -0.6825 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6581 2.1325 -0.0004 27 1 5.3523 -0.0019 0.0087 28 1 4.1201 -2.1334 -0.0006 29 1 2.0986 -3.2993 0.3538 30 1 0.5807 -2.4223 0.6622 31 1 2.7024 -3.9122 -1.8744 32 1 1.7679 -3.2866 -3.2540 33 1 2.7717 -2.1815 -2.2844 34 1 0.0738 -6.0254 -0.8246 35 1 1.5544 -5.4637 -1.6376 36 1 1.2509 -5.0262 0.0609 37 1 -2.8653 -3.1550 -4.6736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:53 Heat of formation + Delta-G solvation = 27.167345 kcal Electronic energy + Delta-G solvation = -18559.664725 eV Core-core repulsion = 15768.996970 eV Total energy + Delta-G solvation = -2790.667755 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68775 -37.14955 -33.43983 -32.48124 -31.89508 -30.31913 -28.90765 -27.11710 -26.23863 -25.51903 -23.28237 -22.02830 -20.37732 -19.04758 -16.97412 -16.15094 -15.80770 -15.22689 -14.83515 -14.24883 -13.73515 -13.62174 -13.29885 -13.15719 -12.84876 -12.65478 -12.39523 -12.26206 -11.84652 -11.49702 -11.30131 -11.18248 -10.92276 -10.83816 -10.77313 -10.52922 -10.33623 -10.25320 -9.85003 -9.66546 -9.07657 -8.73335 -8.64395 -8.34138 -7.28790 -6.09687 -4.13558 1.19206 1.39899 1.62934 3.35577 3.41995 3.45617 3.66740 4.46758 4.76801 4.85670 4.94193 5.10773 5.31046 5.36765 5.52018 5.60280 5.78913 5.84865 5.90524 5.97924 6.08178 6.12116 6.24069 6.25099 6.27778 6.32939 6.36176 6.50580 6.53727 6.76040 6.84736 6.95193 6.98154 7.12795 7.60103 8.00819 8.20190 8.54063 8.92979 9.54436 11.01407 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.004162 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.209838 B = 6725.470904 C = 7268.378605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 C -0.096 4.096 4 C -0.092 4.092 5 Br -0.067 7.067 6 C -0.101 4.101 7 C -0.107 4.107 8 C -0.047 4.047 9 C 0.077 3.923 10 N -0.528 5.528 11 C 0.038 3.962 12 C 0.164 3.836 13 H 0.051 0.949 14 C -0.165 4.165 15 C -0.501 4.501 16 H 0.071 0.929 17 C 0.082 3.918 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.264 1.264 21 H -0.302 1.302 22 H -0.268 1.268 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.011 0.989 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.028 0.972 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.123 10.805 11.371 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.055 4.055 3 C -0.115 4.115 4 C -0.172 4.172 5 Br 0.018 6.982 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.048 4.048 9 C -0.051 4.051 10 N -0.252 5.252 11 C -0.111 4.111 12 C 0.060 3.940 13 H 0.069 0.931 14 C -0.224 4.224 15 C -0.540 4.540 16 H 0.089 0.911 17 C -0.122 4.122 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.189 1.189 21 H -0.229 1.229 22 H -0.194 1.194 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.069 11.863 11.056 20.214 hybrid contribution -0.070 -0.259 0.676 0.727 sum 11.999 11.604 11.732 20.403 Atomic orbital electron populations 1.21109 0.90690 1.04789 1.02053 1.19749 0.96497 0.91659 0.97641 1.20957 0.91860 0.98479 1.00236 1.21615 0.94556 0.91111 1.09888 1.96645 1.75446 1.28175 1.97903 1.20955 0.99765 0.90891 1.00434 1.21044 0.93699 0.97512 1.00390 1.20047 0.93268 0.95466 0.96055 1.21180 0.97777 0.91743 0.94401 1.63009 1.15080 1.42699 1.04462 1.22143 0.92084 0.97507 0.99325 1.20015 0.90883 0.84708 0.98427 0.93119 1.22319 1.00695 1.00985 0.98411 1.20832 1.13168 1.22680 0.97270 0.91072 1.25046 0.96065 0.96241 0.94876 1.69931 1.23311 1.40503 1.19638 0.86716 0.76681 0.83534 0.80924 1.18938 1.22911 1.19370 0.91479 0.91754 0.88672 0.85436 0.85525 0.85517 0.94484 0.90653 0.97023 0.90073 0.93785 0.93007 0.93367 0.95332 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.26 36.00 0.33 -1.72 16 2 C -0.05 -0.84 5.88 -104.63 -0.62 -1.45 16 3 C -0.10 -1.35 9.44 -39.56 -0.37 -1.72 16 4 C -0.09 -1.24 6.22 -39.52 -0.25 -1.48 16 5 Br -0.07 -0.78 33.70 -68.01 -2.29 -3.07 16 6 C -0.10 -1.29 9.79 -39.56 -0.39 -1.68 16 7 C -0.11 -1.46 8.73 -39.58 -0.35 -1.80 16 8 C -0.05 -0.74 4.58 -104.62 -0.48 -1.21 16 9 C 0.08 1.28 3.67 -4.98 -0.02 1.26 16 10 N -0.53 -10.56 3.62 -237.73 -0.86 -11.42 16 11 C 0.04 0.72 8.52 60.06 0.51 1.23 16 12 C 0.16 3.63 1.72 -68.86 -0.12 3.51 16 13 H 0.05 1.16 5.62 -51.93 -0.29 0.87 16 14 C -0.16 -3.18 8.43 37.16 0.31 -2.87 16 15 C -0.50 -13.34 7.64 -34.44 -0.26 -13.60 16 16 H 0.07 2.07 8.05 -52.48 -0.42 1.65 16 17 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 18 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 19 Si 0.89 21.45 25.10 -169.99 -4.27 17.18 16 20 H -0.26 -6.23 6.76 56.52 0.38 -5.85 16 21 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 22 H -0.27 -6.07 6.14 56.52 0.35 -5.72 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 25 H 0.09 1.78 3.46 -51.93 -0.18 1.60 16 26 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 28 H 0.13 1.52 8.04 -52.49 -0.42 1.10 16 29 H 0.04 0.58 6.68 -51.93 -0.35 0.23 16 30 H 0.08 1.25 7.14 -51.93 -0.37 0.88 16 31 H 0.01 0.20 6.62 -51.93 -0.34 -0.14 16 32 H 0.08 1.77 6.99 -51.93 -0.36 1.40 16 33 H 0.04 0.78 6.65 -51.93 -0.35 0.44 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.93 6.76 -51.93 -0.35 0.58 16 36 H 0.03 0.48 6.51 -51.93 -0.34 0.14 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -28.06 307.05 -8.90 -36.96 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.10 Total: 1.03 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.78 Total: -19.36 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.09 Total: -37.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.27 Total: 17.18 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.29 Total: -3.07 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.06 -8.90 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.130 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds