Wall clock time and date at job start Tue Mar 31 2020 10:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 H 1.09000 * 109.47030 * 177.70110 * 3 2 1 5 5 N 1.46892 * 109.47179 * 57.69760 * 3 2 1 6 6 C 1.46899 * 111.00473 * 81.65335 * 5 3 2 7 7 C 1.52991 * 109.47224 * 178.58514 * 6 5 3 8 8 C 1.50710 * 109.47118 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99425 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00181 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99889 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99682 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47460 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47140 * 120.00083 * 12 10 8 15 15 H 1.48503 * 109.46945 * 239.99763 * 12 10 8 16 16 C 1.50707 * 109.46936 * 297.69465 * 3 2 1 17 17 C 1.38235 * 120.00125 * 99.72405 * 16 3 2 18 18 C 1.38224 * 120.00736 * 179.74508 * 17 16 3 19 19 C 1.38263 * 120.02065 * 0.55378 * 18 17 16 20 20 C 1.38194 * 120.00741 * 359.70191 * 19 18 17 21 21 C 1.38304 * 120.00416 * 280.00510 * 16 3 2 22 22 Br 1.89102 * 120.01259 * 359.97438 * 21 16 3 23 23 H 1.08997 * 109.47136 * 305.63895 * 1 2 3 24 24 H 1.09010 * 109.47185 * 65.63435 * 1 2 3 25 25 H 1.08999 * 109.47566 * 185.63359 * 1 2 3 26 26 H 1.08997 * 109.47053 * 120.00048 * 2 1 3 27 27 H 1.08997 * 109.46819 * 239.99819 * 2 1 3 28 28 H 1.00910 * 111.00070 * 205.60844 * 5 3 2 29 29 H 1.09002 * 109.46751 * 298.58515 * 6 5 3 30 30 H 1.09001 * 109.47085 * 58.58090 * 6 5 3 31 31 H 1.09002 * 109.47257 * 299.99691 * 7 6 5 32 32 H 1.09001 * 109.47436 * 59.99790 * 7 6 5 33 33 H 0.97003 * 120.00163 * 180.02562 * 11 10 8 34 34 H 1.07997 * 119.99770 * 0.02562 * 17 16 3 35 35 H 1.08001 * 119.99106 * 180.27555 * 18 17 16 36 36 H 1.07990 * 119.99620 * 179.72117 * 19 18 17 37 37 H 1.08004 * 120.00549 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0412 5 7 1.5055 2.1509 1.1706 6 6 2.2991 1.8573 2.3714 7 6 1.7346 2.6387 3.5594 8 6 2.5485 2.3371 4.7914 9 1 3.3845 1.6558 4.7328 10 6 2.2252 2.9299 5.9935 11 7 1.2062 3.7583 6.0651 12 14 3.2336 2.5554 7.5206 13 1 4.3158 1.5986 7.1769 14 1 3.8300 3.8122 8.0405 15 1 2.3561 1.9575 8.5588 16 6 1.5848 2.1362 -1.2581 17 6 0.4841 2.9719 -1.2271 18 6 0.0697 3.6124 -2.3798 19 6 0.7489 3.4085 -3.5667 20 6 1.8462 2.5691 -3.5997 21 6 2.2648 1.9322 -2.4451 22 35 3.7662 0.7834 -2.4896 23 1 -0.3633 0.5988 0.8352 24 1 -0.3634 0.4240 -0.9362 25 1 -0.3634 -1.0227 0.1009 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.4591 3.1447 1.0018 29 1 2.2541 0.7893 2.5845 30 1 3.3353 2.1508 2.2027 31 1 1.7796 3.7067 3.3463 32 1 0.6985 2.3452 3.7280 33 1 0.9789 4.1757 6.9107 34 1 -0.0493 3.1280 -0.3011 35 1 -0.7876 4.2687 -2.3542 36 1 0.4221 3.9056 -4.4680 37 1 2.3769 2.4102 -4.5268 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132397057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:59 Heat of formation + Delta-G solvation = 13.124385 kcal Electronic energy + Delta-G solvation = -17823.697782 eV Core-core repulsion = 15032.421078 eV Total energy + Delta-G solvation = -2791.276704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83241 -36.78035 -33.71577 -32.50351 -31.87696 -30.80055 -29.33953 -28.65831 -25.68533 -24.02099 -22.48832 -22.21090 -20.48344 -19.62019 -17.01099 -16.30508 -15.77887 -15.37358 -14.89673 -14.61321 -14.37711 -13.80606 -13.44304 -13.26965 -13.05759 -12.87333 -12.33640 -12.08932 -11.64656 -11.35877 -11.22932 -11.11121 -10.97455 -10.91245 -10.63023 -10.59484 -10.51225 -10.13217 -9.88339 -9.39478 -9.13331 -8.91824 -8.70819 -8.35371 -7.84930 -5.99861 -4.02006 1.01280 1.21222 1.57108 3.31479 3.38998 3.43149 3.53867 4.40457 4.54992 4.64648 4.82670 4.93733 5.17355 5.24517 5.36593 5.40432 5.47719 5.60210 5.68004 5.84481 5.96695 6.08703 6.14638 6.22550 6.31703 6.35355 6.37601 6.46247 6.48603 6.74751 6.76418 6.99192 7.46211 7.71895 7.80892 7.93129 8.07282 8.43781 9.05327 9.61943 11.11619 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.003710 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.805344 B = 7546.226445 C = 8196.339611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.116 3.884 4 H 0.057 0.943 5 N -0.681 5.681 6 C 0.066 3.934 7 C 0.026 3.974 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.045 4.045 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.124 4.124 20 C -0.094 4.094 21 C -0.091 4.091 22 Br -0.054 7.054 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.337 0.663 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -3.825 -22.462 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C 0.006 3.994 4 H 0.075 0.925 5 N -0.313 5.313 6 C -0.062 4.062 7 C -0.011 4.011 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.048 4.048 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.143 4.143 20 C -0.114 4.114 21 C -0.171 4.171 22 Br 0.032 6.968 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.531 -4.640 -22.210 22.696 hybrid contribution 1.022 0.663 0.676 1.393 sum 1.553 -3.977 -21.534 21.953 Atomic orbital electron populations 1.21667 0.95219 1.00777 1.02336 1.21463 0.97148 0.94106 1.01640 1.20614 0.97249 0.94459 0.87111 0.92505 1.60752 1.54808 1.13267 1.02501 1.22207 0.93424 1.00862 0.89701 1.19065 0.97005 0.94672 0.90404 1.21212 1.14273 1.26676 0.93724 0.92723 1.24987 0.95215 0.95150 0.98952 1.69978 1.27537 1.29945 1.25818 0.86549 0.80235 0.78102 0.83195 1.19763 1.21051 1.20985 1.19955 0.94741 0.96146 0.93923 1.21264 0.95673 0.95468 0.99448 1.21347 0.99563 0.98767 0.92644 1.21118 0.95791 0.98942 0.98455 1.21023 0.97106 0.96562 0.96733 1.21686 0.97064 1.01877 0.96441 1.96676 1.38103 1.63072 1.98947 0.90467 0.93821 0.93945 0.91397 0.92202 0.84448 0.92109 0.96572 0.96886 0.95614 0.93074 0.83611 0.85412 0.85506 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.31 37.16 0.35 -1.63 16 2 C -0.11 -1.50 5.63 -26.73 -0.15 -1.65 16 3 C 0.12 1.72 1.92 -68.86 -0.13 1.59 16 4 H 0.06 0.90 6.84 -51.93 -0.36 0.55 16 5 N -0.68 -11.64 4.56 -107.96 -0.49 -12.14 16 6 C 0.07 1.37 5.43 -3.83 -0.02 1.35 16 7 C 0.03 0.67 5.22 -27.88 -0.15 0.52 16 8 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 12 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C -0.05 -0.60 4.19 -104.60 -0.44 -1.04 16 17 C -0.10 -1.23 8.09 -39.59 -0.32 -1.55 16 18 C -0.10 -1.07 10.05 -39.58 -0.40 -1.47 16 19 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 20 C -0.09 -0.99 9.79 -39.56 -0.39 -1.38 16 21 C -0.09 -1.12 6.22 -39.52 -0.25 -1.37 16 22 Br -0.05 -0.64 30.87 -68.01 -2.10 -2.73 16 23 H 0.08 1.20 7.36 -51.93 -0.38 0.82 16 24 H 0.04 0.57 7.04 -51.92 -0.37 0.21 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.03 7.34 -51.93 -0.38 0.64 16 27 H 0.06 0.79 7.00 -51.93 -0.36 0.43 16 28 H 0.34 5.65 7.19 -39.29 -0.28 5.37 16 29 H 0.06 1.27 7.30 -51.93 -0.38 0.89 16 30 H 0.02 0.34 8.03 -51.93 -0.42 -0.08 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 34 H 0.15 1.85 6.78 -52.49 -0.36 1.50 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -29.49 319.56 -10.12 -39.61 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.36 Total: 1.50 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.70 Total: -21.65 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.24 Total: -38.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.10 Total: -2.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.49 -10.12 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132397057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.731 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds