Wall clock time and date at job start Tue Mar 31 2020 10:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 H 1.09002 * 109.47072 * 182.69699 * 3 2 1 5 5 N 1.46906 * 109.46928 * 302.69179 * 3 2 1 6 6 C 1.46897 * 111.00138 * 278.17913 * 5 3 2 7 7 C 1.52995 * 109.47201 * 174.65535 * 6 5 3 8 8 C 1.50700 * 109.47321 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99692 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00218 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99785 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00090 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47137 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47242 * 119.99854 * 12 10 8 15 15 H 1.48504 * 109.46965 * 239.99560 * 12 10 8 16 16 C 1.50696 * 109.47213 * 62.69031 * 3 2 1 17 17 C 1.38236 * 120.01072 * 265.00034 * 16 3 2 18 18 C 1.38218 * 120.01283 * 180.02562 * 17 16 3 19 19 C 1.38261 * 120.01977 * 359.97438 * 18 17 16 20 20 C 1.38201 * 120.01060 * 0.02562 * 19 18 17 21 21 C 1.38313 * 120.00297 * 85.02244 * 16 3 2 22 22 Br 1.89096 * 120.00699 * 359.97438 * 21 16 3 23 23 H 1.08991 * 109.47360 * 294.62920 * 1 2 3 24 24 H 1.09005 * 109.47051 * 54.63418 * 1 2 3 25 25 H 1.08997 * 109.46712 * 174.63004 * 1 2 3 26 26 H 1.08997 * 109.47224 * 239.99817 * 2 1 3 27 27 H 1.09001 * 109.47103 * 119.99615 * 2 1 3 28 28 H 1.00899 * 110.99912 * 154.22457 * 5 3 2 29 29 H 1.08997 * 109.47653 * 294.65839 * 6 5 3 30 30 H 1.09003 * 109.46725 * 54.65574 * 6 5 3 31 31 H 1.09009 * 109.47331 * 300.00360 * 7 6 5 32 32 H 1.08996 * 109.47333 * 60.00012 * 7 6 5 33 33 H 0.97003 * 119.99781 * 179.97438 * 11 10 8 34 34 H 1.08003 * 119.99315 * 0.04578 * 17 16 3 35 35 H 1.07997 * 119.98594 * 180.02562 * 18 17 16 36 36 H 1.07993 * 119.99397 * 179.74664 * 19 18 17 37 37 H 1.08001 * 120.00607 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1289 1.4430 -0.0484 5 7 1.4979 2.1535 -1.1656 6 6 2.2862 1.8659 -2.3713 7 6 1.6168 2.5136 -3.5850 8 6 2.4253 2.2179 -4.8220 9 1 3.3266 1.6275 -4.7495 10 6 2.0148 2.7021 -6.0459 11 7 0.9173 3.4217 -6.1339 12 14 3.0173 2.3362 -7.5790 13 1 4.1984 1.5137 -7.2135 14 1 2.1784 1.5932 -8.5534 15 1 3.4723 3.6115 -8.1890 16 6 1.5929 2.1334 1.2624 17 6 0.4365 2.8910 1.2636 18 6 0.0267 3.5251 2.4213 19 6 0.7726 3.4017 3.5789 20 6 1.9288 2.6445 3.5787 21 6 2.3396 2.0101 2.4201 22 35 3.9214 0.9739 2.4191 23 1 -0.3633 0.4282 0.9341 24 1 -0.3633 0.5948 -0.8381 25 1 -0.3633 -1.0232 -0.0962 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.4500 3.1466 -0.9934 29 1 3.2919 2.2692 -2.2527 30 1 2.3425 0.7874 -2.5198 31 1 0.6111 2.1102 -3.7036 32 1 1.5605 3.5919 -3.4365 33 1 0.6288 3.7626 -6.9950 34 1 -0.1469 2.9871 0.3598 35 1 -0.8770 4.1165 2.4219 36 1 0.4542 3.9006 4.4821 37 1 2.5116 2.5485 4.4828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132397249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:01 Heat of formation + Delta-G solvation = 12.432630 kcal Electronic energy + Delta-G solvation = -17822.987956 eV Core-core repulsion = 15031.681256 eV Total energy + Delta-G solvation = -2791.306701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82990 -36.77727 -33.69214 -32.49159 -31.90470 -30.76943 -29.34815 -28.66615 -25.69119 -24.00777 -22.48080 -22.22598 -20.45971 -19.61228 -16.99405 -16.29526 -15.81477 -15.42869 -14.83003 -14.61107 -14.38686 -13.79914 -13.45321 -13.20408 -13.06665 -12.87614 -12.33219 -12.09081 -11.64275 -11.37364 -11.22574 -11.09902 -10.96532 -10.90299 -10.64687 -10.57669 -10.51856 -10.15369 -9.86417 -9.40533 -9.12028 -8.91493 -8.71296 -8.34309 -7.83119 -5.99024 -4.01144 1.00867 1.20859 1.56924 3.31820 3.39323 3.43440 3.53520 4.40763 4.55150 4.64369 4.82843 4.94211 5.17133 5.24717 5.37344 5.39944 5.48142 5.59881 5.68417 5.84715 5.96411 6.08485 6.14889 6.22018 6.31430 6.35398 6.36552 6.46297 6.50827 6.74674 6.77561 7.00901 7.47046 7.73281 7.80513 7.95328 8.09116 8.44861 9.06405 9.62718 11.12418 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.003723 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.520891 B = 7518.952849 C = 8188.360206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C 0.115 3.885 4 H 0.058 0.942 5 N -0.681 5.681 6 C 0.066 3.934 7 C 0.028 3.972 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.047 4.047 17 C -0.097 4.097 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.095 4.095 21 C -0.091 4.091 22 Br -0.054 7.054 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.336 0.664 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -2.947 22.615 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C 0.005 3.995 4 H 0.075 0.925 5 N -0.312 5.312 6 C -0.062 4.062 7 C -0.010 4.010 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.049 4.049 17 C -0.116 4.116 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.115 4.115 21 C -0.170 4.170 22 Br 0.032 6.968 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.350 -3.738 22.344 22.694 hybrid contribution 0.999 0.634 -0.670 1.360 sum 2.349 -3.103 21.674 22.021 Atomic orbital electron populations 1.21683 0.95199 1.00808 1.02392 1.21436 0.97182 0.94091 1.01501 1.20632 0.97337 0.94466 0.87089 0.92473 1.60725 1.54817 1.13246 1.02426 1.22205 0.93786 1.00495 0.89708 1.19036 0.96470 0.95521 0.89927 1.21221 1.09403 1.32905 0.92369 0.92759 1.24989 0.95115 0.95189 0.99013 1.69986 1.22853 1.35662 1.24768 0.86555 0.80263 0.78026 0.83266 1.19775 1.20988 1.21061 1.19955 0.94398 0.96386 0.94144 1.21265 0.95552 0.95627 0.99185 1.21346 0.99670 0.98638 0.92769 1.21120 0.95020 0.99427 0.98677 1.21021 0.97023 0.96853 0.96585 1.21711 0.95569 1.02978 0.96787 1.96678 1.31552 1.69607 1.98975 0.93761 0.90395 0.93942 0.91358 0.92401 0.84546 0.96597 0.92155 0.95633 0.96865 0.93091 0.83617 0.85421 0.85510 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.23 37.16 0.34 -1.65 16 2 C -0.10 -1.48 5.69 -26.73 -0.15 -1.64 16 3 C 0.11 1.70 1.96 -68.86 -0.13 1.57 16 4 H 0.06 0.90 6.65 -51.93 -0.35 0.56 16 5 N -0.68 -11.62 4.48 -107.95 -0.48 -12.11 16 6 C 0.07 1.37 5.41 -3.83 -0.02 1.35 16 7 C 0.03 0.72 5.28 -27.89 -0.15 0.57 16 8 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 12 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C -0.05 -0.62 4.29 -104.60 -0.45 -1.06 16 17 C -0.10 -1.19 7.67 -39.59 -0.30 -1.49 16 18 C -0.11 -1.08 10.05 -39.58 -0.40 -1.47 16 19 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 20 C -0.09 -1.00 9.79 -39.56 -0.39 -1.38 16 21 C -0.09 -1.12 6.22 -39.52 -0.25 -1.36 16 22 Br -0.05 -0.64 31.40 -68.01 -2.14 -2.77 16 23 H 0.04 0.58 6.82 -51.93 -0.35 0.22 16 24 H 0.08 1.22 7.36 -51.93 -0.38 0.84 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.04 7.25 -51.93 -0.38 0.66 16 27 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 28 H 0.34 5.61 7.52 -39.29 -0.30 5.32 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 1.26 7.15 -51.93 -0.37 0.89 16 31 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.15 1.84 7.03 -52.48 -0.37 1.47 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -29.53 320.46 -10.17 -39.70 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.39 Total: 1.37 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.70 Total: -21.61 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.25 Total: -38.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.14 Total: -2.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.53 -10.17 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132397249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.136 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds