Wall clock time and date at job start Tue Mar 31 2020 10:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 H 1.08998 * 109.46771 * 305.84448 * 3 2 1 5 5 C 1.50705 * 109.46806 * 185.84328 * 3 2 1 6 6 H 1.07996 * 119.99692 * 243.40415 * 5 3 2 7 7 C 1.37877 * 119.99736 * 63.41097 * 5 3 2 8 8 N 1.31518 * 119.99766 * 196.04112 * 7 5 3 9 9 Si 1.86803 * 120.00354 * 16.03233 * 7 5 3 10 10 H 1.48503 * 109.46492 * 92.74213 * 9 7 5 11 11 H 1.48500 * 109.47057 * 212.74024 * 9 7 5 12 12 H 1.48494 * 109.46961 * 332.74453 * 9 7 5 13 13 N 1.46895 * 109.47065 * 65.84633 * 3 2 1 14 14 C 1.46907 * 110.99640 * 258.59272 * 13 3 2 15 15 C 1.53003 * 109.46793 * 175.30494 * 14 13 3 16 16 C 1.50704 * 109.46955 * 180.02562 * 15 14 13 17 17 C 1.38259 * 119.99363 * 269.73202 * 16 15 14 18 18 C 1.38224 * 120.01924 * 179.72873 * 17 16 15 19 19 C 1.38248 * 120.00601 * 0.54020 * 18 17 16 20 20 C 1.38299 * 119.98942 * 359.72878 * 19 18 17 21 21 Br 1.89105 * 120.00928 * 180.02562 * 20 19 18 22 22 C 1.38193 * 119.99315 * 89.99735 * 16 15 14 23 23 H 1.08997 * 109.46811 * 175.85629 * 1 2 3 24 24 H 1.08992 * 109.46961 * 295.85913 * 1 2 3 25 25 H 1.08998 * 109.47033 * 55.85835 * 1 2 3 26 26 H 1.08998 * 109.47261 * 239.99844 * 2 1 3 27 27 H 1.09001 * 109.46844 * 119.99414 * 2 1 3 28 28 H 0.97002 * 120.00105 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00365 * 134.64729 * 13 3 2 30 30 H 1.09001 * 109.47074 * 55.31223 * 14 13 3 31 31 H 1.09003 * 109.47050 * 295.30546 * 14 13 3 32 32 H 1.09006 * 109.47137 * 60.00316 * 15 14 13 33 33 H 1.08995 * 109.47566 * 300.00058 * 15 14 13 34 34 H 1.08000 * 119.99641 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.99813 * 180.27261 * 18 17 16 36 36 H 1.08004 * 120.00024 * 179.70946 * 19 18 17 37 37 H 1.07997 * 120.00779 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9856 -0.8330 5 6 3.5401 1.4449 -0.1447 6 1 4.1585 1.8359 0.6497 7 6 4.1229 0.9481 -1.2912 8 7 5.4049 0.6548 -1.3032 9 14 3.0916 0.6913 -2.8274 10 1 3.1664 1.9035 -3.6820 11 1 3.6093 -0.4786 -3.5814 12 1 1.6793 0.4451 -2.4401 13 7 1.6689 2.0931 1.2637 14 6 0.4995 2.9639 1.0839 15 6 0.0724 3.5305 2.4395 16 6 -1.1276 4.4233 2.2551 17 6 -0.9539 5.7731 2.0116 18 6 -2.0541 6.5915 1.8369 19 6 -3.3289 6.0625 1.9167 20 6 -3.5031 4.7133 2.1659 21 35 -5.2465 3.9890 2.2745 22 6 -2.4015 3.8936 2.3351 23 1 -0.3633 -1.0250 -0.0743 24 1 -0.3633 0.4482 0.9247 25 1 -0.3633 0.5768 -0.8505 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8149 0.3050 -2.1097 29 1 2.4473 2.6077 1.6477 30 1 -0.3207 2.3870 0.6566 31 1 0.7563 3.7830 0.4122 32 1 0.8927 4.1073 2.8669 33 1 -0.1843 2.7114 3.1111 34 1 0.0417 6.1877 1.9539 35 1 -1.9179 7.6450 1.6423 36 1 -4.1885 6.7029 1.7849 37 1 -2.5371 2.8399 2.5292 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136960713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:00 Heat of formation + Delta-G solvation = 13.604546 kcal Electronic energy + Delta-G solvation = -17590.655947 eV Core-core repulsion = 14799.400065 eV Total energy + Delta-G solvation = -2791.255883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56684 -36.76946 -34.02575 -32.40030 -32.01544 -31.07357 -29.46989 -28.38812 -26.27831 -23.00378 -22.58286 -22.13448 -20.78328 -19.58430 -16.98319 -16.86641 -15.84295 -15.35849 -15.17703 -14.23776 -14.06315 -13.64815 -13.59679 -13.25704 -13.01130 -12.79244 -12.55839 -11.94613 -11.91740 -11.67465 -11.37974 -11.27766 -10.95904 -10.83418 -10.77365 -10.53767 -10.43867 -10.23475 -9.84358 -9.39816 -9.15989 -9.00397 -8.77187 -8.44464 -7.47067 -6.16268 -4.11345 0.94979 1.13076 1.44671 3.25433 3.35503 3.39486 3.45503 4.38394 4.54402 4.66100 4.88383 5.07658 5.15117 5.15930 5.28253 5.39202 5.58850 5.62254 5.79694 5.96373 6.00937 6.06591 6.07279 6.11904 6.21135 6.26876 6.37382 6.51142 6.67452 6.69158 6.77364 7.03214 7.05671 7.44520 7.63706 7.95992 8.33249 8.58341 8.92415 9.50212 10.96532 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.003175 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.875035 B = 8817.140945 C = 9357.174578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.192 3.808 4 H 0.003 0.997 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.681 5.681 14 C 0.062 3.938 15 C -0.081 4.081 16 C -0.064 4.064 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.102 4.102 20 C -0.088 4.088 21 Br -0.059 7.059 22 C -0.088 4.088 23 H 0.034 0.966 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.264 0.736 29 H 0.339 0.661 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 10.314 7.793 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.083 3.917 4 H 0.021 0.979 5 C -0.573 4.573 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.689 3.311 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.312 5.312 14 C -0.068 4.068 15 C -0.119 4.119 16 C -0.065 4.065 17 C -0.120 4.120 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.167 4.167 21 Br 0.027 6.973 22 C -0.108 4.108 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.723 9.416 7.940 24.972 hybrid contribution 0.369 0.758 -1.527 1.744 sum -21.354 10.174 6.413 24.508 Atomic orbital electron populations 1.21876 0.98663 0.99457 1.00583 1.21850 0.92663 0.99343 1.00789 1.19442 0.95404 0.90794 0.86024 0.97911 1.21235 0.89490 1.42617 1.03971 0.90646 1.24895 0.94754 0.94005 0.98796 1.69992 1.11707 1.42482 1.28414 0.87208 0.82419 0.77846 0.83625 1.20837 1.21253 1.17409 1.60546 1.07776 1.33123 1.29728 1.22010 0.95616 0.95096 0.94070 1.20672 0.94077 0.97884 0.99220 1.20043 0.94608 0.94351 0.97503 1.21283 0.99363 0.93243 0.98135 1.21151 0.91878 1.00142 1.00005 1.21055 0.98115 0.93205 0.99856 1.21762 0.90933 0.95841 1.08167 1.96702 1.17753 1.85384 1.97506 1.21071 0.90806 0.99869 0.99025 0.94649 0.92626 0.94456 0.93251 0.92246 0.92624 0.84333 0.91291 0.95999 0.90782 0.90013 0.85270 0.85246 0.85340 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.74 37.16 0.32 -2.41 16 2 C -0.11 -2.37 4.85 -26.73 -0.13 -2.50 16 3 C 0.19 4.43 1.75 -68.86 -0.12 4.31 16 4 H 0.00 0.08 6.35 -51.93 -0.33 -0.25 16 5 C -0.54 -14.60 9.03 -34.44 -0.31 -14.91 16 6 H 0.08 2.21 7.67 -52.49 -0.40 1.81 16 7 C 0.08 2.23 5.31 -17.82 -0.09 2.13 16 8 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 9 Si 0.86 21.04 25.76 -169.99 -4.38 16.66 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.25 -5.79 5.49 56.52 0.31 -5.48 16 13 N -0.68 -13.23 6.09 -107.94 -0.66 -13.88 16 14 C 0.06 1.00 5.01 -3.82 -0.02 0.98 16 15 C -0.08 -1.04 5.65 -27.88 -0.16 -1.19 16 16 C -0.06 -0.76 5.13 -104.63 -0.54 -1.29 16 17 C -0.10 -1.09 9.70 -39.58 -0.38 -1.48 16 18 C -0.11 -1.08 10.05 -39.58 -0.40 -1.48 16 19 C -0.10 -1.02 9.79 -39.56 -0.39 -1.41 16 20 C -0.09 -0.98 6.22 -39.52 -0.25 -1.22 16 21 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.90 16 22 C -0.09 -1.03 9.44 -39.56 -0.37 -1.41 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.96 6.65 -51.93 -0.35 0.61 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.14 4.88 -51.93 -0.25 0.89 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.34 6.62 7.97 -39.29 -0.31 6.31 16 30 H 0.07 1.14 6.01 -51.93 -0.31 0.83 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 318.69 15.07 4.80 4.80 Total: -1.00 -28.98 318.69 -9.99 -38.97 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.40 Total: 4.13 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.83 Total: -21.89 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.12 Total: -39.78 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.38 Total: 16.66 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.98 -9.99 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136960713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.575 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds