Wall clock time and date at job start Tue Mar 31 2020 09:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 C 1.52999 * 109.46821 * 240.00249 * 2 1 3 5 5 C 1.50705 * 109.47315 * 60.00087 * 4 2 1 6 6 H 1.08001 * 119.99566 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00295 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99860 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46853 * 60.00004 * 9 7 5 11 11 H 1.48499 * 109.46865 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46951 * 300.00055 * 9 7 5 13 13 C 1.52996 * 109.47311 * 120.00353 * 2 1 3 14 14 N 1.46498 * 109.47246 * 299.99967 * 13 2 1 15 15 C 1.39673 * 120.00107 * 180.02562 * 14 13 2 16 16 C 1.38935 * 120.06913 * 359.97429 * 15 14 13 17 17 C 1.38094 * 119.94359 * 180.02562 * 16 15 14 18 18 C 1.38288 * 120.08492 * 359.97438 * 17 16 15 19 19 C 1.38359 * 120.13771 * 0.04136 * 18 17 16 20 20 Br 1.89108 * 119.96929 * 179.97438 * 19 18 17 21 21 C 1.38214 * 120.05821 * 359.96004 * 19 18 17 22 22 H 1.09004 * 109.46888 * 299.99702 * 1 2 3 23 23 H 1.08996 * 109.47226 * 59.99563 * 1 2 3 24 24 H 1.08996 * 109.46913 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46984 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47455 * 300.00296 * 3 2 1 27 27 H 1.09004 * 109.47024 * 60.00381 * 3 2 1 28 28 H 1.09002 * 109.47003 * 179.97438 * 4 2 1 29 29 H 1.08994 * 109.47636 * 300.00009 * 4 2 1 30 30 H 0.97002 * 120.00180 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47211 * 179.97438 * 13 2 1 32 32 H 1.09004 * 109.47382 * 59.99603 * 13 2 1 33 33 H 0.97003 * 119.99848 * 359.97438 * 14 13 2 34 34 H 1.07996 * 120.02918 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.95800 * 179.97438 * 17 16 15 36 36 H 1.08002 * 119.92847 * 180.02562 * 18 17 16 37 37 H 1.07995 * 120.04378 * 180.29889 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8672 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 2.6271 -1.5507 -3.8528 9 14 1.2478 0.3989 -5.2572 10 1 1.7418 1.7993 -5.2570 11 1 1.7438 -0.3004 -6.4697 12 1 -0.2373 0.3978 -5.2572 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8897 -0.5077 3.7139 16 6 2.6884 -1.6372 3.8430 17 6 3.0204 -2.1069 5.0984 18 6 2.5595 -1.4541 6.2270 19 6 1.7636 -0.3292 6.1025 20 35 1.1353 0.5594 7.6491 21 6 1.4277 0.1459 4.8488 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7208 -1.2495 29 1 1.6766 -1.7488 -1.2494 30 1 2.8620 -1.8817 -4.7338 31 1 3.1301 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2492 33 1 0.9944 0.7581 2.3564 34 1 3.0492 -2.1475 2.9622 35 1 3.6409 -2.9851 5.1990 36 1 2.8211 -1.8233 7.2077 37 1 0.8105 1.0267 4.7519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155568720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:44 Heat of formation + Delta-G solvation = 7.013886 kcal Electronic energy + Delta-G solvation = -17611.878302 eV Core-core repulsion = 14820.336627 eV Total energy + Delta-G solvation = -2791.541675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.54374 -37.53812 -34.43651 -32.38728 -32.05011 -29.84942 -28.67835 -27.01475 -26.54912 -25.87055 -23.04425 -22.58095 -21.05388 -18.33259 -17.22830 -16.46090 -16.07820 -15.38747 -14.62168 -14.50000 -14.13048 -13.87182 -13.45410 -13.36305 -13.02890 -12.81390 -12.44934 -12.10178 -11.63148 -11.40265 -11.09808 -11.05521 -10.92464 -10.90203 -10.67045 -10.44458 -10.37203 -10.29841 -10.04082 -9.74494 -9.25993 -8.99579 -8.78882 -8.40562 -7.33683 -6.05102 -4.06363 1.17631 1.53536 1.56770 3.29000 3.34419 3.35808 3.63160 3.75598 4.41428 4.82375 5.12206 5.20610 5.30601 5.34769 5.46977 5.52171 5.52965 5.70618 5.77189 6.08572 6.11744 6.14999 6.21283 6.29955 6.32449 6.46049 6.58283 6.58924 6.69813 6.98888 7.02218 7.05348 7.43895 7.56248 7.68949 7.85659 7.93215 8.35536 8.97989 9.57145 11.06363 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.040997 B = 0.002608 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.811216 B =10733.137373 C =11219.589421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.130 3.870 14 N -0.733 5.733 15 C 0.233 3.767 16 C -0.186 4.186 17 C -0.064 4.064 18 C -0.165 4.165 19 C -0.038 4.038 20 Br -0.065 7.065 21 C -0.180 4.180 22 H 0.029 0.971 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 2.189 21.996 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.007 3.993 14 N -0.361 5.361 15 C 0.125 3.875 16 C -0.209 4.209 17 C -0.084 4.084 18 C -0.187 4.187 19 C -0.118 4.118 20 Br 0.020 6.980 21 C -0.205 4.205 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.626 2.304 22.236 22.414 hybrid contribution -0.348 0.497 -1.345 1.475 sum -1.974 2.802 20.891 21.171 Atomic orbital electron populations 1.21747 0.95233 1.01119 1.00266 1.20870 0.95520 0.95888 0.94871 1.21747 1.00458 0.95898 1.00266 1.19083 0.96245 0.95157 0.89547 1.21145 1.31275 1.12141 0.90538 0.92326 1.25002 0.95262 0.95058 0.99089 1.69945 1.36902 1.23019 1.23612 0.86707 0.79190 0.79795 0.82610 1.20298 1.21351 1.20290 1.21655 0.98243 0.95846 0.83589 1.45089 1.56203 1.32599 1.02171 1.17809 0.92115 0.92133 0.85444 1.20870 1.03426 0.98226 0.98399 1.20876 0.97536 0.98528 0.91450 1.20746 1.02055 0.96682 0.99226 1.21372 1.01599 0.97771 0.91034 1.96663 1.87840 1.77965 1.35517 1.20433 1.06930 1.03198 0.89911 0.95186 0.91500 0.93419 0.93417 0.91503 0.95181 0.96420 0.96417 0.92949 0.92400 0.92400 0.76390 0.85304 0.85486 0.85825 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.29 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.36 7.65 -34.44 -0.26 -13.62 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.13 2.05 3.80 -4.04 -0.02 2.03 16 14 N -0.73 -10.06 5.14 -58.64 -0.30 -10.36 16 15 C 0.23 3.10 6.65 -83.79 -0.56 2.55 16 16 C -0.19 -2.37 9.31 -39.38 -0.37 -2.74 16 17 C -0.06 -0.72 10.04 -39.62 -0.40 -1.11 16 18 C -0.16 -1.85 9.78 -39.52 -0.39 -2.24 16 19 C -0.04 -0.45 6.22 -39.55 -0.25 -0.70 16 20 Br -0.07 -0.69 33.70 -68.01 -2.29 -2.99 16 21 C -0.18 -2.26 9.64 -39.35 -0.38 -2.64 16 22 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 23 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 27 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 32 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 33 H 0.40 5.17 6.18 -40.82 -0.25 4.92 16 34 H 0.13 1.61 6.73 -52.49 -0.35 1.26 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -27.45 318.70 -9.61 -37.06 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.22 Total: 2.14 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.31 Total: -21.40 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.44 Total: -35.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.45 -9.61 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155568720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.074 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds