Wall clock time and date at job start Tue Mar 31 2020 09:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38241 * 119.99322 * 2 1 4 4 C 1.38310 * 119.99015 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 120.00942 * 179.97438 * 4 3 2 6 6 C 1.38343 * 119.97875 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.99276 * 359.74639 * 6 4 3 8 8 C 1.38221 * 119.99906 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.98618 * 0.02562 * 8 2 1 10 10 N 1.46895 * 109.47030 * 79.99675 * 9 8 2 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46891 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46946 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00275 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99908 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99697 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99899 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47454 * 59.99701 * 18 16 14 20 20 H 1.48496 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46926 * 299.99492 * 18 16 14 22 22 H 1.08998 * 109.47769 * 270.02583 * 1 2 3 23 23 H 1.09001 * 109.47685 * 30.02566 * 1 2 3 24 24 H 1.09002 * 109.46968 * 150.02461 * 1 2 3 25 25 H 1.08002 * 120.00610 * 359.95152 * 3 2 1 26 26 H 1.08002 * 120.00872 * 179.97438 * 6 4 3 27 27 H 1.07990 * 120.00129 * 180.27987 * 7 6 4 28 28 H 1.08996 * 109.46908 * 319.99493 * 9 8 2 29 29 H 1.09002 * 109.46622 * 199.99666 * 9 8 2 30 30 H 1.00899 * 111.00672 * 56.04735 * 10 9 8 31 31 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 32 32 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 33 33 H 1.09001 * 109.47142 * 300.00160 * 12 11 10 34 34 H 1.09004 * 109.47006 * 60.00213 * 12 11 10 35 35 H 1.09001 * 109.47372 * 300.00036 * 13 12 11 36 36 H 1.09004 * 109.47108 * 60.00292 * 13 12 11 37 37 H 0.97007 * 119.99539 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5269 2.8347 -0.0002 6 6 4.2723 -0.0012 0.0016 7 6 3.5806 -1.1976 0.0074 8 6 2.1980 -1.1970 0.0005 9 6 1.4441 -2.5020 0.0005 10 7 0.9914 -2.8059 -1.3635 11 6 0.2515 -4.0744 -1.4021 12 6 -0.2032 -4.3561 -2.8356 13 6 -0.9733 -5.6775 -2.8760 14 6 -1.4207 -5.9553 -4.2880 15 1 -1.1795 -5.2592 -5.0777 16 6 -2.1379 -7.0982 -4.5717 17 7 -2.4312 -7.9460 -3.6102 18 14 -2.6918 -7.4428 -6.3221 19 1 -1.5037 -7.5356 -7.2081 20 1 -3.4394 -8.7253 -6.3613 21 1 -3.5723 -6.3417 -6.7885 22 1 -0.3634 0.0005 1.0276 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6580 2.1326 -0.0008 26 1 5.3523 -0.0018 0.0016 27 1 4.1200 -2.1331 0.0128 28 1 0.5806 -2.4226 0.6608 29 1 2.0985 -3.2995 0.3524 30 1 1.7681 -2.8210 -2.0074 31 1 0.8978 -4.8827 -1.0602 32 1 -0.6204 -4.0064 -0.7515 33 1 -0.8498 -3.5477 -3.1772 34 1 0.6684 -4.4239 -3.4866 35 1 -0.3264 -6.4856 -2.5346 36 1 -1.8450 -5.6101 -2.2249 37 1 -2.9355 -8.7503 -3.8099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165947784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:34 Heat of formation + Delta-G solvation = 1.334847 kcal Electronic energy + Delta-G solvation = -16926.222789 eV Core-core repulsion = 14134.434852 eV Total energy + Delta-G solvation = -2791.787937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89883 -36.49294 -34.01527 -33.04243 -32.33088 -31.17714 -29.60530 -27.43150 -26.37801 -24.42363 -22.41686 -22.16798 -20.79496 -20.03111 -16.74510 -16.25975 -16.23644 -15.25419 -15.04580 -14.77648 -14.37785 -13.94292 -13.62011 -13.41604 -13.17816 -12.65401 -12.60963 -12.27492 -12.15445 -11.70672 -11.49801 -11.26637 -11.06131 -10.87387 -10.81908 -10.58928 -10.53756 -10.52449 -9.70803 -9.37357 -9.09565 -9.04710 -8.72291 -8.34201 -8.24210 -5.99505 -4.01610 0.84738 1.08632 1.37988 3.32633 3.34020 3.38143 3.40990 4.37942 4.47758 4.52335 4.64276 4.75250 4.99038 5.05867 5.27305 5.36304 5.40687 5.49512 5.58777 5.66221 5.71674 5.77752 5.87191 5.96674 6.00177 6.19501 6.28579 6.44400 6.61842 6.69157 6.72377 7.12010 7.25425 7.54162 7.68038 7.82780 8.00717 8.43928 9.05382 9.62354 11.11892 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.036039 B = 0.002106 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.747463 B =13293.737247 C =13468.883349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.052 4.052 3 C -0.096 4.096 4 C -0.088 4.088 5 Br -0.060 7.060 6 C -0.100 4.100 7 C -0.106 4.106 8 C -0.066 4.066 9 C 0.093 3.907 10 N -0.684 5.684 11 C 0.058 3.942 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.340 0.660 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.501 21.469 11.700 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.053 4.053 3 C -0.116 4.116 4 C -0.167 4.167 5 Br 0.025 6.975 6 C -0.120 4.120 7 C -0.125 4.125 8 C -0.066 4.066 9 C -0.036 4.036 10 N -0.315 5.315 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.157 0.843 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.183 22.285 11.790 28.927 hybrid contribution 0.311 -1.249 -0.835 1.534 sum 14.494 21.035 10.955 27.795 Atomic orbital electron populations 1.20941 0.90109 1.04618 1.02350 1.19806 0.96789 0.91519 0.97189 1.21012 0.91872 0.98640 1.00085 1.21731 0.94730 0.91492 1.08746 1.96697 1.75331 1.27637 1.97787 1.21015 1.00072 0.90845 1.00068 1.21098 0.93667 0.97807 0.99925 1.19934 0.93264 0.95139 0.98304 1.20917 0.98076 0.92053 0.92565 1.60595 1.29413 1.35842 1.05646 1.22168 0.97014 0.87596 1.00203 1.21623 0.99798 1.00528 0.92510 1.19059 0.94850 0.90591 0.97010 1.21222 1.34346 1.06004 0.94237 0.92724 1.25031 0.96135 0.96252 0.97098 1.69956 1.39910 1.11808 1.31947 0.86653 0.78810 0.77466 0.85046 1.20271 1.21315 1.20205 0.91318 0.91602 0.88725 0.85151 0.85229 0.85262 0.89826 0.94416 0.84257 0.95612 0.91337 0.92510 0.93650 0.96836 0.96576 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.26 36.00 0.33 -0.89 16 2 C -0.05 -0.55 5.88 -104.63 -0.62 -1.17 16 3 C -0.10 -0.98 9.44 -39.55 -0.37 -1.36 16 4 C -0.09 -0.89 6.22 -39.52 -0.25 -1.14 16 5 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.84 16 6 C -0.10 -0.97 9.79 -39.56 -0.39 -1.36 16 7 C -0.11 -1.04 9.67 -39.59 -0.38 -1.42 16 8 C -0.07 -0.71 5.39 -104.62 -0.56 -1.27 16 9 C 0.09 1.05 4.94 -4.98 -0.02 1.03 16 10 N -0.68 -9.30 5.83 -115.06 -0.67 -9.97 16 11 C 0.06 0.96 5.68 -3.82 -0.02 0.93 16 12 C -0.11 -2.16 5.41 -26.73 -0.14 -2.30 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.09 1.09 6.34 -51.93 -0.33 0.76 16 25 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 26 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.13 1.06 8.03 -52.49 -0.42 0.64 16 28 H 0.08 0.93 7.28 -51.93 -0.38 0.56 16 29 H 0.04 0.41 8.00 -51.93 -0.42 -0.01 16 30 H 0.34 4.51 8.72 -39.29 -0.34 4.17 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -29.66 330.54 -10.90 -40.55 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.65 Total: -1.08 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -2.98 Total: -22.08 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.07 Total: -36.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.66 -10.90 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165947784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.886 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds