Wall clock time and date at job start Tue Mar 31 2020 09:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09009 * 109.46746 * 2 1 4 4 C 1.50694 * 109.46950 * 240.00565 * 2 1 3 5 5 H 1.08002 * 119.99860 * 239.99556 * 4 2 1 6 6 C 1.37871 * 120.00358 * 59.99938 * 4 2 1 7 7 N 1.31513 * 120.00207 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00111 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46917 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47026 * 119.99841 * 8 6 4 11 11 H 1.48496 * 109.47249 * 239.99872 * 8 6 4 12 12 N 1.46498 * 109.47160 * 120.00026 * 2 1 3 13 13 C 1.46492 * 119.99996 * 60.00471 * 12 2 1 14 14 C 1.34774 * 119.99896 * 240.00062 * 12 2 1 15 15 O 1.21583 * 120.00498 * 359.97438 * 14 12 2 16 16 N 1.34776 * 119.99746 * 180.02562 * 14 12 2 17 17 C 1.38996 * 119.99921 * 179.97438 * 16 14 12 18 18 N 1.28301 * 125.00261 * 180.02562 * 17 16 14 19 19 C 1.36475 * 117.85312 * 180.02562 * 18 17 16 20 20 C 1.46551 * 135.26783 * 180.02562 * 19 18 17 21 21 C 1.31758 * 114.93110 * 179.97438 * 20 19 18 22 22 S 1.75239 * 110.91584 * 359.97438 * 21 20 19 23 23 C 1.36402 * 112.96165 * 359.97438 * 19 18 17 24 24 S 1.75682 * 125.00011 * 0.02896 * 17 16 14 25 25 H 1.08998 * 109.46832 * 299.99465 * 1 2 3 26 26 H 1.08998 * 109.47043 * 59.99814 * 1 2 3 27 27 H 1.08994 * 109.46752 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00240 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.47101 * 269.99747 * 13 12 2 30 30 H 1.09007 * 109.47318 * 29.99396 * 13 12 2 31 31 H 1.08998 * 109.47341 * 149.99717 * 13 12 2 32 32 H 0.96993 * 120.00343 * 359.97438 * 16 14 12 33 33 H 1.07997 * 122.53455 * 359.97438 * 20 19 18 34 34 H 1.07997 * 124.54058 * 180.27153 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 3.1484 -2.2853 -3.6039 10 1 1.1679 -1.5863 -4.8166 11 1 3.1473 -0.1855 -4.8161 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0931 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 3.0874 1.1283 1.8907 16 7 3.2429 -0.6711 3.1835 17 6 4.0425 0.0042 4.0981 18 7 4.5221 -0.5054 5.1735 19 6 5.2915 0.2929 5.9694 20 6 6.0076 0.1196 7.2362 21 6 6.6472 1.1893 7.6635 22 16 6.4388 2.5283 6.5524 23 6 5.4351 1.5563 5.4758 24 16 4.5450 1.6813 3.9519 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 0.7082 1.1610 -3.4844 29 1 0.7377 -2.1444 1.9993 30 1 1.5296 -2.5968 0.4707 31 1 2.4631 -2.5818 1.9862 32 1 3.0086 -1.5997 3.3370 33 1 6.0108 -0.8144 7.7785 34 1 7.2265 1.2335 8.5739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267905967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:37 Heat of formation + Delta-G solvation = 56.538240 kcal Electronic energy + Delta-G solvation = -20556.414431 eV Core-core repulsion = 17322.704213 eV Total energy + Delta-G solvation = -3233.710218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.050 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36172 -39.27575 -36.17736 -35.40508 -33.88949 -32.74293 -29.58219 -28.44497 -26.47307 -25.34713 -24.87844 -22.64947 -21.51086 -20.37972 -19.29736 -18.69987 -17.54754 -16.93727 -16.33663 -16.07397 -15.60925 -15.22892 -14.46022 -14.45486 -14.27524 -13.91206 -13.38807 -13.04118 -12.87914 -12.68235 -12.14553 -11.83794 -11.71089 -11.42143 -11.13757 -11.05701 -10.94708 -10.81036 -10.37734 -10.27273 -10.26025 -9.73254 -9.64681 -9.60207 -9.31092 -8.54384 -8.21613 -7.88282 -7.71683 -6.18096 -4.26820 0.68590 0.81758 1.46796 1.62479 1.78393 2.06016 2.52882 2.93049 3.20462 3.29192 3.31577 3.52416 3.97565 4.28697 4.37192 4.96600 5.10781 5.14113 5.41199 5.64996 5.79318 5.86216 5.92337 6.09707 6.31439 6.42427 6.65733 6.78136 6.93130 7.20080 7.40544 7.57614 7.72744 7.89725 8.04044 8.30002 8.63528 8.81311 9.40066 10.87348 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.003142 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.322623 B = 8909.177686 C = 9166.006011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.271 3.729 3 H 0.068 0.932 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.695 3.305 15 O -0.561 6.561 16 N -0.641 5.641 17 C 0.335 3.665 18 N -0.509 5.509 19 C 0.090 3.910 20 C -0.079 4.079 21 C -0.205 4.205 22 S 0.166 5.834 23 C -0.353 4.353 24 S 0.266 5.734 25 H 0.013 0.987 26 H 0.097 0.903 27 H 0.031 0.969 28 H 0.265 0.735 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.418 0.582 33 H 0.148 0.852 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 -1.579 16.930 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.171 3.829 3 H 0.086 0.914 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.396 3.604 15 O -0.439 6.439 16 N -0.296 5.296 17 C -0.042 4.042 18 N -0.232 5.232 19 C -0.043 4.043 20 C -0.112 4.112 21 C -0.342 4.342 22 S 0.422 5.578 23 C -0.588 4.588 24 S 0.511 5.489 25 H 0.032 0.968 26 H 0.115 0.885 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.258 0.742 33 H 0.166 0.834 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.001 1.017 15.832 17.341 hybrid contribution -0.029 -3.014 0.024 3.014 sum 6.972 -1.997 15.856 17.436 Atomic orbital electron populations 1.22120 0.97734 0.99685 1.01118 1.19065 0.90994 0.94383 0.78420 0.91398 1.21320 1.32237 1.13315 0.90090 0.92013 1.24875 0.94795 0.94935 0.99004 1.69877 1.36038 1.22464 1.23918 0.86404 0.78627 0.79582 0.82575 1.19783 1.20860 1.20810 1.47655 1.49542 1.11843 1.23050 1.21696 0.98843 0.82794 1.03357 1.15935 0.80266 0.85005 0.79215 1.90794 1.62414 1.15183 1.75461 1.42324 1.50437 1.16004 1.20853 1.23295 0.95583 0.94377 0.90951 1.66111 1.16259 1.35976 1.04888 1.19764 1.00361 0.87536 0.96616 1.20351 0.97763 1.00032 0.93060 1.25060 1.07197 0.96919 1.05002 1.83727 1.49008 1.11994 1.13074 1.29437 1.15503 1.03674 1.10233 1.86274 1.44201 1.07451 1.10951 0.96786 0.88474 0.94941 0.92545 0.93079 0.88929 0.93125 0.74180 0.83414 0.80790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -3.00 16 2 C 0.27 6.50 2.64 -69.08 -0.18 6.32 16 3 H 0.07 1.89 6.90 -51.92 -0.36 1.53 16 4 C -0.53 -13.60 7.99 -34.45 -0.28 -13.87 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.59 -11.72 2.75 -181.00 -0.50 -12.22 16 13 C 0.08 1.17 9.20 59.84 0.55 1.72 16 14 C 0.70 13.84 8.24 -86.92 -0.72 13.12 16 15 O -0.56 -12.81 13.14 5.29 0.07 -12.74 16 16 N -0.64 -10.55 5.27 -16.60 -0.09 -10.64 16 17 C 0.34 5.73 8.33 -88.42 -0.74 4.99 16 18 N -0.51 -8.42 10.66 -10.03 -0.11 -8.53 16 19 C 0.09 1.36 7.54 -83.11 -0.63 0.73 16 20 C -0.08 -0.91 10.43 -38.12 -0.40 -1.30 16 21 C -0.20 -1.92 11.05 28.85 0.32 -1.61 16 22 S 0.17 1.85 23.27 -107.50 -2.50 -0.65 16 23 C -0.35 -5.26 7.74 30.07 0.23 -5.03 16 24 S 0.27 4.48 20.48 -107.50 -2.20 2.28 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.09 1.49 7.02 -51.92 -0.36 1.13 16 31 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 32 H 0.42 5.66 6.55 -40.82 -0.27 5.39 16 33 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -29.92 313.79 -9.83 -39.75 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.24 Total: 2.40 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.59 Total: 3.73 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.07 Total: -54.78 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -4.70 Total: 1.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.92 -9.83 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267905967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.290 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds