Wall clock time and date at job start Tue Mar 31 2020 09:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 C 1.34783 * 119.99826 * 120.00322 * 12 2 1 15 15 O 1.21584 * 120.00156 * 359.97438 * 14 12 2 16 16 N 1.34771 * 119.99706 * 179.97438 * 14 12 2 17 17 C 1.38992 * 119.99796 * 179.97438 * 16 14 12 18 18 N 1.28302 * 125.00350 * 179.97438 * 17 16 14 19 19 C 1.36482 * 117.84900 * 180.02562 * 18 17 16 20 20 C 1.46559 * 135.26446 * 180.02562 * 19 18 17 21 21 C 1.31747 * 114.92987 * 180.02562 * 20 19 18 22 22 S 1.75235 * 110.91989 * 0.02562 * 21 20 19 23 23 C 1.36393 * 112.96466 * 0.02562 * 19 18 17 24 24 S 1.75684 * 124.99970 * 359.69888 * 17 16 14 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 30 30 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 31 31 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 32 32 H 0.96997 * 120.00540 * 359.97438 * 16 14 12 33 33 H 1.07999 * 122.53208 * 359.97438 * 20 19 18 34 34 H 1.08009 * 124.54162 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0866 1.1284 -1.8912 16 7 3.2428 -0.6713 -3.1835 17 6 4.0414 0.0043 -4.0987 18 7 4.5209 -0.5053 -5.1741 19 6 5.2904 0.2930 -5.9700 20 6 6.0057 0.1200 -7.2374 21 6 6.6456 1.1895 -7.6644 22 16 6.4387 2.5280 -6.5525 23 6 5.4341 1.5564 -5.4764 24 16 4.5374 1.6837 -3.9566 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7090 1.1614 3.4844 29 1 0.7374 -2.1443 -1.9993 30 1 2.4628 -2.5819 -1.9864 31 1 1.5294 -2.5969 -0.4708 32 1 3.0090 -1.6001 -3.3366 33 1 6.0087 -0.8139 -7.7798 34 1 7.2214 1.2350 -8.5771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267905972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:39 Heat of formation + Delta-G solvation = 56.556351 kcal Electronic energy + Delta-G solvation = -20556.322973 eV Core-core repulsion = 17322.613540 eV Total energy + Delta-G solvation = -3233.709433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.050 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36169 -39.27546 -36.17755 -35.40530 -33.88974 -32.74194 -29.58240 -28.44561 -26.47319 -25.34673 -24.87769 -22.64915 -21.51085 -20.37961 -19.29770 -18.69986 -17.54735 -16.93688 -16.33709 -16.07328 -15.60990 -15.22875 -14.46176 -14.45259 -14.27547 -13.91199 -13.38859 -13.04154 -12.87871 -12.68188 -12.14590 -11.83806 -11.71119 -11.42170 -11.13789 -11.05714 -10.94678 -10.80963 -10.37807 -10.27246 -10.26126 -9.73138 -9.64783 -9.60187 -9.31100 -8.54323 -8.21627 -7.88297 -7.71693 -6.18143 -4.26797 0.68610 0.81732 1.46827 1.62458 1.78370 2.05997 2.52872 2.93023 3.20478 3.29171 3.31588 3.52415 3.97532 4.28693 4.37169 4.96606 5.10725 5.14093 5.41160 5.64985 5.79375 5.86200 5.92327 6.09715 6.31442 6.42413 6.65620 6.78175 6.93133 7.20083 7.40545 7.57608 7.72711 7.89697 8.04031 8.29979 8.63530 8.81323 9.40049 10.87325 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.029966 B = 0.003142 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.179581 B = 8910.203610 C = 9166.569120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.271 3.729 3 H 0.068 0.932 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.695 3.305 15 O -0.561 6.561 16 N -0.641 5.641 17 C 0.335 3.665 18 N -0.509 5.509 19 C 0.090 3.910 20 C -0.079 4.079 21 C -0.205 4.205 22 S 0.166 5.834 23 C -0.353 4.353 24 S 0.266 5.734 25 H 0.097 0.903 26 H 0.013 0.987 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.418 0.582 33 H 0.148 0.852 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.784 -1.576 -16.939 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.171 3.829 3 H 0.086 0.914 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.396 3.604 15 O -0.438 6.438 16 N -0.296 5.296 17 C -0.042 4.042 18 N -0.232 5.232 19 C -0.043 4.043 20 C -0.112 4.112 21 C -0.342 4.342 22 S 0.422 5.578 23 C -0.588 4.588 24 S 0.511 5.489 25 H 0.115 0.885 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.258 0.742 33 H 0.166 0.834 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.981 1.023 -15.846 17.345 hybrid contribution -0.024 -3.017 -0.021 3.017 sum 6.957 -1.994 -15.866 17.439 Atomic orbital electron populations 1.22119 0.97736 0.99679 1.01118 1.19064 0.90993 0.94384 0.78420 0.91395 1.21323 1.32240 1.13309 0.90090 0.92012 1.24880 0.94799 0.94937 0.99007 1.69883 1.36069 1.22430 1.23911 0.86402 0.78623 0.79582 0.82569 1.19784 1.20805 1.20865 1.47660 1.49528 1.11850 1.23059 1.21695 0.98841 0.82795 1.03355 1.15936 0.80263 0.85009 0.79214 1.90794 1.62430 1.15158 1.75467 1.42323 1.50483 1.15982 1.20826 1.23295 0.95609 0.94355 0.90947 1.66116 1.16263 1.36015 1.04839 1.19766 1.00344 0.87563 0.96607 1.20351 0.97763 1.00036 0.93056 1.25058 1.07213 0.96937 1.04969 1.83728 1.48983 1.12036 1.13064 1.29435 1.15435 1.03667 1.10299 1.86274 1.44068 1.07202 1.11340 0.88474 0.96793 0.94942 0.92550 0.93077 0.93126 0.88931 0.74177 0.83414 0.80788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -3.00 16 2 C 0.27 6.50 2.64 -69.08 -0.18 6.32 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -13.60 7.99 -34.44 -0.28 -13.87 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.59 -11.72 2.75 -181.01 -0.50 -12.22 16 13 C 0.08 1.17 9.20 59.85 0.55 1.72 16 14 C 0.70 13.84 8.24 -86.92 -0.72 13.12 16 15 O -0.56 -12.81 13.14 5.29 0.07 -12.74 16 16 N -0.64 -10.55 5.27 -16.60 -0.09 -10.64 16 17 C 0.34 5.73 8.33 -88.42 -0.74 4.99 16 18 N -0.51 -8.42 10.66 -10.03 -0.11 -8.53 16 19 C 0.09 1.36 7.54 -83.11 -0.63 0.73 16 20 C -0.08 -0.91 10.43 -38.11 -0.40 -1.30 16 21 C -0.20 -1.92 11.04 28.85 0.32 -1.61 16 22 S 0.17 1.85 23.27 -107.50 -2.50 -0.65 16 23 C -0.35 -5.26 7.74 30.07 0.23 -5.03 16 24 S 0.27 4.48 20.48 -107.50 -2.20 2.28 16 25 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 31 H 0.09 1.49 7.02 -51.93 -0.36 1.13 16 32 H 0.42 5.66 6.55 -40.82 -0.27 5.39 16 33 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -29.92 313.79 -9.83 -39.75 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.24 Total: 2.40 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.59 Total: 3.73 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.07 Total: -54.78 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -4.70 Total: 1.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.92 -9.83 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267905972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.310 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds