Wall clock time and date at job start Tue Mar 31 2020 10:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46929 * 2 1 4 4 C 1.53010 * 109.46914 * 240.00593 * 2 1 3 5 5 C 1.50697 * 109.47097 * 174.99788 * 4 2 1 6 6 C 1.38242 * 119.98711 * 89.99554 * 5 4 2 7 7 C 1.38224 * 120.00951 * 179.71980 * 6 5 4 8 8 C 1.38325 * 119.98750 * 0.26296 * 7 6 5 9 9 Br 1.89100 * 120.01208 * 180.02562 * 8 7 6 10 10 C 1.38329 * 119.97885 * 359.97438 * 8 7 6 11 11 C 1.38213 * 119.99239 * 0.02562 * 10 8 7 12 12 N 1.46893 * 109.47490 * 120.00511 * 2 1 3 13 13 C 1.46900 * 110.99985 * 274.99651 * 12 2 1 14 14 C 1.53000 * 109.47148 * 179.97438 * 13 12 2 15 15 C 1.50698 * 109.47028 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99986 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00119 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99691 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 119.99829 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47453 * 90.00029 * 19 17 15 21 21 H 1.48497 * 109.47234 * 210.00546 * 19 17 15 22 22 H 1.48501 * 109.47075 * 330.00177 * 19 17 15 23 23 H 1.08999 * 109.47306 * 59.99346 * 1 2 3 24 24 H 1.08999 * 109.47439 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47088 * 299.99680 * 1 2 3 26 26 H 1.09003 * 109.46877 * 54.99766 * 4 2 1 27 27 H 1.08995 * 109.46596 * 295.00043 * 4 2 1 28 28 H 1.08002 * 119.99955 * 0.02562 * 6 5 4 29 29 H 1.07999 * 120.00721 * 180.27782 * 7 6 5 30 30 H 1.08002 * 120.00250 * 179.97438 * 10 8 7 31 31 H 1.08001 * 119.99687 * 179.97438 * 11 10 8 32 32 H 1.00896 * 111.00317 * 151.04268 * 12 2 1 33 33 H 1.08998 * 109.47500 * 300.00286 * 13 12 2 34 34 H 1.09003 * 109.46801 * 60.00112 * 13 12 2 35 35 H 1.08996 * 109.47812 * 300.00274 * 14 13 12 36 36 H 1.09003 * 109.46793 * 60.00579 * 14 13 12 37 37 H 0.97000 * 119.99191 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5418 -0.6148 -1.3129 6 6 4.3289 -1.5817 -0.7156 7 6 5.7065 -1.4876 -0.7785 8 6 6.2975 -0.4230 -1.4347 9 35 8.1821 -0.2941 -1.5219 10 6 5.5095 0.5468 -2.0281 11 6 4.1321 0.4519 -1.9646 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 6 2.5953 -0.5334 3.5743 15 6 2.6592 0.4051 4.7516 16 1 2.3641 1.4376 4.6358 17 6 3.0954 -0.0540 5.9764 18 7 3.1516 0.7653 7.0037 19 14 3.6064 -1.8394 6.1765 20 1 5.0568 -1.9746 5.8880 21 1 3.3357 -2.2788 7.5689 22 1 2.8330 -2.6846 5.2317 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6053 -0.2615 -2.1371 27 1 1.7515 -1.7714 -1.2058 28 1 3.8673 -2.4133 -0.2038 29 1 6.3213 -2.2454 -0.3157 30 1 5.9706 1.3784 -2.5402 31 1 3.5168 1.2093 -2.4275 32 1 2.9173 -1.1206 1.0285 33 1 2.7589 1.0461 2.1182 34 1 1.0872 0.6161 2.5525 35 1 1.9187 -1.3568 3.8029 36 1 3.5906 -0.9274 3.3688 37 1 3.4582 0.4422 7.8654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276594513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:54 Heat of formation + Delta-G solvation = 7.563218 kcal Electronic energy + Delta-G solvation = -17617.339091 eV Core-core repulsion = 14825.821237 eV Total energy + Delta-G solvation = -2791.517854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.78347 -37.07871 -33.89052 -32.63604 -31.51631 -31.23020 -29.85319 -28.49709 -26.19720 -23.99557 -23.01913 -21.59503 -20.40739 -20.09314 -16.83051 -16.76316 -15.86262 -15.58282 -15.33972 -14.50634 -14.24000 -13.78681 -13.69078 -13.55033 -13.13422 -12.60318 -12.49153 -12.18004 -12.11372 -11.77320 -11.47569 -11.34606 -11.21002 -10.96330 -10.89132 -10.61209 -10.43643 -10.02105 -9.84350 -9.70070 -9.22625 -9.17939 -8.68496 -8.52121 -7.94162 -6.02950 -4.01030 0.90718 1.13616 1.47924 3.32972 3.40240 3.42411 3.45796 4.47587 4.50150 4.58152 4.62583 4.73657 5.03148 5.12966 5.17232 5.31738 5.34514 5.42687 5.58098 5.64731 5.78459 5.85228 5.92090 6.02753 6.06313 6.12953 6.22221 6.28442 6.38547 6.45507 6.64765 6.80498 7.15685 7.39198 7.62966 7.77525 7.92545 8.54934 9.01223 9.59614 11.10506 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.004215 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.293280 B = 6641.425553 C = 8421.715368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.042 0.958 4 C -0.087 4.087 5 C -0.066 4.066 6 C -0.112 4.112 7 C -0.085 4.085 8 C -0.095 4.095 9 Br -0.057 7.057 10 C -0.089 4.089 11 C -0.112 4.112 12 N -0.692 5.692 13 C 0.074 3.926 14 C -0.009 4.009 15 C -0.520 4.520 16 H 0.070 0.930 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.263 1.263 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.334 0.666 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.007 0.993 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -3.487 -23.398 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 H 0.060 0.940 4 C -0.124 4.124 5 C -0.066 4.066 6 C -0.131 4.131 7 C -0.104 4.104 8 C -0.174 4.174 9 Br 0.028 6.972 10 C -0.109 4.109 11 C -0.131 4.131 12 N -0.325 5.325 13 C -0.054 4.054 14 C -0.047 4.047 15 C -0.559 4.559 16 H 0.088 0.912 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.188 1.188 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.025 0.975 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.595 -3.670 -23.070 24.021 hybrid contribution 0.797 -0.271 0.151 0.855 sum 6.392 -3.941 -22.919 24.117 Atomic orbital electron populations 1.21776 0.94424 1.02234 1.01162 1.21475 0.95851 0.95874 0.89222 0.94016 1.20921 0.90015 1.02802 0.98711 1.20135 0.96392 0.94219 0.95888 1.21198 0.92876 0.99660 0.99389 1.21153 0.95250 0.96778 0.97261 1.21767 0.90147 0.99867 1.05612 1.96707 1.04077 1.98460 1.97964 1.21079 0.93621 0.97675 0.98502 1.21054 0.94025 0.98077 0.99973 1.60784 1.33268 1.34267 1.04207 1.21981 1.00085 0.93351 0.89999 1.19538 0.95485 0.96738 0.92947 1.21067 1.44228 0.97679 0.92886 0.91158 1.25000 0.95031 0.97553 0.95787 1.69919 1.47818 1.35334 1.01242 0.86768 0.79257 0.85929 0.77330 1.20380 1.21409 1.18756 0.93115 0.92076 0.92234 0.90233 0.89764 0.84506 0.84876 0.85144 0.85210 0.84584 0.96183 0.91690 0.95680 0.97482 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.41 37.16 0.35 -1.33 16 2 C 0.09 1.14 2.64 -67.71 -0.18 0.96 16 3 H 0.04 0.59 7.80 -51.93 -0.40 0.19 16 4 C -0.09 -0.90 4.98 -27.88 -0.14 -1.04 16 5 C -0.07 -0.74 4.84 -104.62 -0.51 -1.24 16 6 C -0.11 -1.30 8.04 -39.59 -0.32 -1.62 16 7 C -0.08 -0.99 9.79 -39.55 -0.39 -1.38 16 8 C -0.09 -1.11 6.22 -39.52 -0.25 -1.35 16 9 Br -0.06 -0.63 33.70 -68.01 -2.29 -2.92 16 10 C -0.09 -0.96 9.79 -39.56 -0.39 -1.35 16 11 C -0.11 -1.18 9.70 -39.59 -0.38 -1.57 16 12 N -0.69 -11.49 6.31 -106.73 -0.67 -12.16 16 13 C 0.07 1.52 5.42 -3.82 -0.02 1.50 16 14 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 15 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 19 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 26 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.14 1.46 7.53 -52.49 -0.40 1.07 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.33 5.35 5.50 -39.29 -0.22 5.13 16 33 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.06 1.35 7.44 -51.93 -0.39 0.96 16 35 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 36 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -31.12 323.92 -10.26 -41.38 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.51 Total: 1.17 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.77 Total: -22.30 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.10 Total: -39.64 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.12 -10.26 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276594513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.942 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds