Wall clock time and date at job start Tue Mar 31 2020 09:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38130 * 120.03115 * 2 1 4 4 C 1.38266 * 120.07175 * 180.02562 * 3 2 1 5 5 N 1.48026 * 119.92405 * 179.97438 * 4 3 2 6 6 O 1.21793 * 119.99863 * 359.97438 * 5 4 3 7 7 O 1.21802 * 119.99319 * 180.02562 * 5 4 3 8 8 C 1.38311 * 120.14967 * 359.95825 * 4 3 2 9 9 C 1.38084 * 120.07542 * 359.78601 * 8 4 3 10 10 C 1.38878 * 120.04198 * 179.97438 * 2 1 3 11 11 N 1.39675 * 120.07598 * 359.97438 * 10 2 1 12 12 N 1.40097 * 120.00279 * 179.97438 * 11 10 2 13 13 C 1.34784 * 120.00130 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99774 * 179.72966 * 13 12 11 16 16 S 1.81008 * 109.46759 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99946 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99996 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00252 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00327 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99735 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47351 * 90.00094 * 21 19 17 23 23 H 1.48496 * 109.47299 * 210.00069 * 21 19 17 24 24 H 1.48507 * 109.47281 * 330.00181 * 21 19 17 25 25 H 1.08998 * 109.46847 * 270.01921 * 1 2 3 26 26 H 1.08991 * 109.47293 * 30.02122 * 1 2 3 27 27 H 1.09005 * 109.46794 * 150.02043 * 1 2 3 28 28 H 1.07996 * 119.96934 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.96028 * 180.02562 * 8 4 3 30 30 H 1.07991 * 120.03905 * 180.25268 * 9 8 4 31 31 H 0.97005 * 119.99698 * 0.02562 * 11 10 2 32 32 H 0.97005 * 120.00024 * 0.02562 * 12 11 10 33 33 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 34 34 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 35 35 H 0.97000 * 120.00223 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1968 -0.0005 5 7 4.3185 2.4803 -0.0011 6 8 3.7074 3.5338 -0.0016 7 8 5.5366 2.4826 -0.0021 8 6 4.2765 0.0013 -0.0002 9 6 3.5917 -1.1977 0.0051 10 6 2.2023 -1.2022 0.0005 11 7 1.5064 -2.4133 0.0016 12 7 2.2094 -3.6251 0.0016 13 6 1.5378 -4.7938 0.0021 14 8 0.3250 -4.7962 0.0021 15 6 2.2940 -6.0973 -0.0040 16 16 1.1205 -7.4754 -0.0025 17 6 2.2433 -8.8333 -0.0110 18 1 3.3082 -8.6534 -0.0157 19 6 1.7593 -10.1341 -0.0118 20 7 2.5980 -11.1485 -0.0177 21 14 -0.0826 -10.4452 -0.0044 22 1 -0.5768 -10.5246 -1.4026 23 1 -0.3657 -11.7247 0.6940 24 1 -0.7696 -9.3336 0.7010 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1311 -0.0004 29 1 5.3565 0.0057 -0.0002 30 1 4.1353 -2.1308 0.0095 31 1 0.5364 -2.4152 0.0016 32 1 3.1794 -3.6232 0.0012 33 1 2.9167 -6.1518 -0.8970 34 1 2.9248 -6.1556 0.8829 35 1 2.2597 -12.0576 -0.0186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288633255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:08 Heat of formation + Delta-G solvation = 21.643118 kcal Electronic energy + Delta-G solvation = -21757.549398 eV Core-core repulsion = 18079.573143 eV Total energy + Delta-G solvation = -3677.976255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.28208 -40.72137 -39.47154 -36.66861 -36.42069 -33.93065 -32.60407 -32.53258 -30.70730 -28.72582 -27.78996 -25.92332 -25.71853 -23.31929 -22.12729 -21.22098 -19.11687 -19.00465 -18.82663 -18.04123 -17.62680 -17.59586 -16.41183 -15.75759 -15.53413 -15.14426 -14.93849 -14.74317 -14.36443 -14.05792 -13.80439 -13.74676 -13.31169 -12.94365 -12.71340 -12.65093 -12.07433 -11.93069 -11.67771 -11.44113 -11.31390 -11.27396 -11.14547 -10.86207 -10.22191 -10.09341 -9.97267 -9.67523 -9.15533 -8.73363 -7.99174 -7.12896 -6.43498 -4.18460 -0.28719 0.53046 1.16115 1.26129 1.36641 2.43310 2.68720 2.89985 3.20643 3.34663 3.36608 3.64981 3.90570 4.00117 4.17685 4.31361 4.36044 4.46366 4.65506 4.80050 4.93166 4.95310 5.07548 5.10306 5.22704 5.39524 5.41945 5.45839 5.54588 5.69061 5.76499 6.13503 6.30533 6.77108 7.11224 7.53157 7.78978 7.99235 8.26543 9.01532 10.65457 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.035794 B = 0.002312 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.066493 B =12106.227335 C =12867.836196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.157 4.157 3 C 0.000 4.000 4 C -0.109 4.109 5 N 0.043 4.957 6 O -0.178 6.178 7 O -0.177 6.177 8 C 0.000 4.000 9 C -0.201 4.201 10 C 0.272 3.728 11 N -0.515 5.515 12 N -0.535 5.535 13 C 0.534 3.466 14 O -0.511 6.511 15 C -0.118 4.118 16 S -0.130 6.130 17 C -0.527 4.527 18 H 0.091 0.909 19 C 0.097 3.903 20 N -0.875 5.875 21 Si 0.856 3.144 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.236 1.236 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.440 0.560 32 H 0.424 0.576 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 22.242 0.151 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.164 4.164 3 C -0.020 4.020 4 C -0.195 4.195 5 N 0.557 4.443 6 O -0.391 6.391 7 O -0.390 6.390 8 C -0.020 4.020 9 C -0.225 4.225 10 C 0.161 3.839 11 N -0.236 5.236 12 N -0.285 5.285 13 C 0.321 3.679 14 O -0.383 6.383 15 C -0.269 4.269 16 S 0.095 5.905 17 C -0.674 4.674 18 H 0.109 0.891 19 C -0.112 4.112 20 N -0.511 5.511 21 Si 0.681 3.319 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.160 1.160 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.287 0.713 32 H 0.267 0.733 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.329 21.172 0.159 21.300 hybrid contribution 1.152 -0.146 -0.046 1.162 sum -1.176 21.026 0.113 21.059 Atomic orbital electron populations 1.20707 0.89171 1.03677 1.03318 1.19136 0.96986 0.89572 1.10701 1.20581 0.90872 0.99134 0.91454 1.20734 0.92326 0.83419 1.23060 1.43495 1.01087 1.02777 0.96947 1.94515 1.69870 1.20235 1.54445 1.94525 0.95737 1.94312 1.54392 1.20692 1.01620 0.89099 0.90562 1.20405 0.91551 0.98503 1.12027 1.17918 0.91666 0.84279 0.90074 1.43768 1.07479 0.94368 1.77950 1.45270 1.08350 0.96123 1.78799 1.20729 0.88618 0.83147 0.75434 1.90746 1.13477 1.86413 1.47684 1.23227 1.03521 0.93473 1.06708 1.84885 1.11115 0.96965 1.97487 1.22265 0.94806 0.90742 1.59591 0.89125 1.24701 0.98592 0.94867 0.93042 1.69922 1.34850 0.99023 1.47341 0.86752 0.85151 0.80003 0.80018 1.19110 1.19733 1.15995 0.90288 0.90125 0.91358 0.82822 0.82837 0.84017 0.71347 0.73325 0.87612 0.87588 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.57 36.01 0.34 -0.25 16 2 C -0.16 -1.12 5.90 -104.42 -0.62 -1.73 16 3 C 0.00 0.00 9.20 -39.61 -0.36 -0.37 16 4 C -0.11 -1.02 6.85 -79.91 -0.55 -1.57 16 5 N 0.04 0.50 4.45 33.98 0.15 0.66 16 6 O -0.18 -2.24 18.44 -29.46 -0.54 -2.78 16 7 O -0.18 -2.25 18.44 -29.46 -0.54 -2.79 16 8 C 0.00 0.00 9.55 -39.61 -0.38 -0.37 16 9 C -0.20 -1.41 9.48 -39.38 -0.37 -1.79 16 10 C 0.27 2.13 6.70 -83.79 -0.56 1.57 16 11 N -0.51 -4.65 6.35 32.41 0.21 -4.45 16 12 N -0.53 -5.31 6.22 31.22 0.19 -5.11 16 13 C 0.53 7.71 7.96 -10.98 -0.09 7.62 16 14 O -0.51 -9.22 15.70 5.56 0.09 -9.13 16 15 C -0.12 -1.89 6.16 36.00 0.22 -1.67 16 16 S -0.13 -2.98 18.55 -107.50 -1.99 -4.97 16 17 C -0.53 -14.10 10.04 30.94 0.31 -13.79 16 18 H 0.09 2.52 8.03 -52.49 -0.42 2.10 16 19 C 0.10 2.70 5.50 -17.43 -0.10 2.60 16 20 N -0.88 -25.19 13.97 55.49 0.78 -24.41 16 21 Si 0.86 20.54 27.74 -169.99 -4.71 15.82 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.24 -5.61 6.74 56.52 0.38 -5.23 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.07 0.37 6.55 -51.93 -0.34 0.03 16 28 H 0.15 0.99 7.60 -52.49 -0.40 0.59 16 29 H 0.15 1.00 7.60 -52.49 -0.40 0.60 16 30 H 0.14 0.70 6.20 -52.49 -0.33 0.37 16 31 H 0.44 4.08 6.00 -182.60 -1.10 2.99 16 32 H 0.42 2.92 6.61 -182.60 -1.21 1.71 16 33 H 0.11 1.53 8.14 -51.91 -0.42 1.11 16 34 H 0.11 1.53 8.14 -51.92 -0.42 1.11 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -33.03 327.14 -8.63 -41.66 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.03 Total: 0.34 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.15 Total: -9.75 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 1.33 Total: -33.32 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -1.00 Total: -14.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.71 Total: 15.82 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -1.99 Total: -4.97 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.03 -8.63 -41.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288633255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.300 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds