Wall clock time and date at job start Tue Mar 31 2020 09:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48496 * 109.47653 * 270.00567 * 3 2 1 5 5 H 1.48505 * 109.46715 * 30.00609 * 3 2 1 6 6 H 1.48495 * 109.47277 * 149.99843 * 3 2 1 7 7 C 1.37880 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47213 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99830 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99610 * 179.97438 * 11 10 9 14 14 C 1.40148 * 119.99503 * 185.52620 * 13 11 10 15 15 C 1.38778 * 120.02785 * 24.83445 * 14 13 11 16 16 C 1.38616 * 120.03376 * 179.75884 * 15 14 13 17 17 C 1.39011 * 119.90937 * 0.41739 * 16 15 14 18 18 C 1.38689 * 119.93875 * 359.90895 * 17 16 15 19 19 C 1.38244 * 120.14907 * 359.86340 * 18 17 16 20 20 Cl 1.73605 * 119.99081 * 180.02562 * 19 18 17 21 21 O 1.36201 * 120.74786 * 180.14956 * 17 16 15 22 22 C 1.43167 * 116.72141 * 342.73913 * 21 17 16 23 23 C 1.53472 * 108.25388 * 46.19007 * 22 21 17 24 24 O 1.36141 * 119.31514 * 180.09422 * 16 15 14 25 25 H 0.96995 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47333 * 60.00184 * 9 7 2 27 27 H 1.09009 * 109.47401 * 300.00230 * 9 7 2 28 28 H 1.08998 * 109.47246 * 59.99595 * 10 9 7 29 29 H 1.09006 * 109.46884 * 299.99656 * 10 9 7 30 30 H 0.96991 * 120.00386 * 5.25682 * 13 11 10 31 31 H 1.08001 * 119.98061 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.92856 * 179.88524 * 18 17 16 33 33 H 1.08993 * 109.69825 * 286.50043 * 22 21 17 34 34 H 1.09001 * 109.70986 * 165.88094 * 22 21 17 35 35 H 1.08999 * 109.70751 * 180.56195 * 23 22 21 36 36 H 1.08991 * 109.71221 * 59.93019 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1658 -6.1344 -0.0018 14 6 1.4700 -7.3452 -0.1193 15 6 0.2251 -7.3741 -0.7319 16 6 -0.4611 -8.5725 -0.8527 17 6 0.0957 -9.7435 -0.3515 18 6 1.3369 -9.7107 0.2664 19 6 2.0232 -8.5163 0.3825 20 17 3.5770 -8.4800 1.1561 21 8 -0.5622 -10.9308 -0.4635 22 6 -1.9625 -10.8660 -0.7547 23 6 -2.1706 -9.8574 -1.8926 24 8 -1.6804 -8.5844 -1.4580 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 3.1327 -6.1362 0.0751 31 1 -0.2074 -6.4632 -1.1187 32 1 1.7684 -10.6202 0.6573 33 1 -2.5071 -10.5386 0.1309 34 1 -2.3195 -11.8482 -1.0642 35 1 -3.2324 -9.7819 -2.1272 36 1 -1.6205 -10.1812 -2.7760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291990931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:47 Heat of formation + Delta-G solvation = -92.313928 kcal Electronic energy + Delta-G solvation = -22729.013224 eV Core-core repulsion = 19011.758963 eV Total energy + Delta-G solvation = -3717.254261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.49775 -40.03041 -37.88156 -37.42141 -36.39754 -34.39641 -33.54628 -31.30239 -31.02955 -30.13600 -28.22084 -25.86112 -24.74395 -23.57378 -21.97316 -20.92390 -19.89785 -18.91508 -18.05195 -17.77556 -16.76531 -16.33101 -15.81993 -15.71247 -15.22447 -15.11303 -14.64887 -14.50258 -14.41361 -14.00315 -13.83439 -13.50125 -13.30902 -12.72320 -12.46722 -12.35519 -12.21101 -11.42474 -11.23652 -11.21800 -11.08423 -10.94647 -10.78706 -10.62791 -10.03356 -9.93374 -9.72471 -9.28912 -9.11595 -8.56995 -8.35318 -7.78702 -5.99003 -4.03700 0.91736 1.06490 1.86489 2.73393 2.87471 2.97966 3.31158 3.32297 3.38854 3.41418 3.54685 3.94592 4.40512 4.45280 4.52834 4.61718 4.73666 5.00150 5.08743 5.19159 5.27038 5.36273 5.37183 5.68187 5.77019 5.99146 6.04160 6.10939 6.18599 6.63250 6.67946 6.78041 7.19086 7.54061 7.70196 7.79301 8.02027 8.30970 8.48065 9.03979 9.60183 11.11874 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.003138 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.051853 B = 8920.115345 C =10280.162004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.506 6.506 13 N -0.677 5.677 14 C 0.183 3.817 15 C -0.121 4.121 16 C 0.083 3.917 17 C 0.031 3.969 18 C -0.082 4.082 19 C -0.075 4.075 20 Cl -0.059 7.059 21 O -0.306 6.306 22 C 0.021 3.979 23 C 0.019 3.981 24 O -0.298 6.298 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.413 0.587 31 H 0.171 0.829 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -24.455 -2.000 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.379 6.379 13 N -0.323 5.323 14 C 0.086 3.914 15 C -0.142 4.142 16 C 0.037 3.963 17 C -0.015 4.015 18 C -0.102 4.102 19 C -0.104 4.104 20 Cl -0.030 7.030 21 O -0.221 6.221 22 C -0.055 4.055 23 C -0.056 4.056 24 O -0.212 6.212 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.250 0.750 31 H 0.188 0.812 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.267 -24.237 -1.952 24.316 hybrid contribution 0.878 0.706 0.081 1.129 sum 1.144 -23.530 -1.872 23.632 Atomic orbital electron populations 1.69988 1.06057 1.26674 1.50003 1.25019 0.94831 0.99263 0.95220 0.86579 0.79777 0.83444 0.78083 1.20654 1.21216 1.19861 1.21184 0.92965 0.90874 1.51649 0.92506 1.18933 0.93117 0.89251 0.98823 1.21946 1.00917 0.90861 1.03131 1.21945 0.88855 0.85319 0.73821 1.90655 1.14287 1.86999 1.45960 1.44050 1.11116 1.03873 1.73229 1.17160 0.92740 0.85201 0.96324 1.20634 0.93500 0.98224 1.01861 1.18724 0.87235 0.93318 0.97022 1.18507 0.94724 0.84997 1.03236 1.19878 0.92959 0.97288 1.00038 1.20148 0.90851 0.93692 1.05754 1.98357 1.26329 1.98615 1.79681 1.86294 1.22040 1.26152 1.87611 1.23640 0.80789 1.02185 0.98865 1.23676 1.02179 0.82979 0.96804 1.86402 1.30669 1.30931 1.73227 0.92895 0.95636 0.95628 0.89619 0.89526 0.74966 0.81213 0.83570 0.90353 0.86006 0.85886 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.13 -2.50 5.64 -27.88 -0.16 -2.65 16 11 C 0.51 9.50 7.64 -10.98 -0.08 9.41 16 12 O -0.51 -11.28 13.15 5.55 0.07 -11.20 16 13 N -0.68 -9.98 5.19 -9.82 -0.05 -10.03 16 14 C 0.18 2.72 6.43 -83.61 -0.54 2.18 16 15 C -0.12 -1.94 8.63 -39.24 -0.34 -2.28 16 16 C 0.08 1.19 6.49 -39.16 -0.25 0.93 16 17 C 0.03 0.39 6.49 -39.13 -0.25 0.14 16 18 C -0.08 -0.97 9.74 -39.41 -0.38 -1.36 16 19 C -0.07 -0.95 6.33 -39.33 -0.25 -1.20 16 20 Cl -0.06 -0.64 27.78 -51.86 -1.44 -2.08 16 21 O -0.31 -3.35 10.42 -33.16 -0.35 -3.70 16 22 C 0.02 0.16 7.26 37.40 0.27 0.43 16 23 C 0.02 0.16 7.26 37.40 0.27 0.43 16 24 O -0.30 -3.96 10.42 -32.97 -0.34 -4.30 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.03 0.73 8.10 -51.92 -0.42 0.31 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.41 4.94 7.77 -40.82 -0.32 4.62 16 31 H 0.17 3.13 5.79 -52.49 -0.30 2.82 16 32 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -33.76 324.56 -7.71 -41.47 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.96 Total: 1.40 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.25 Total: -6.55 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.69 Total: -36.34 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.62 Total: -19.20 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.44 Total: -2.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.76 -7.71 -41.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291990931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.846 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds