Wall clock time and date at job start Tue Mar 31 2020 09:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46648 * 2 1 4 4 C 1.50705 * 109.46489 * 180.02562 * 3 2 1 5 5 N 1.30214 * 121.06112 * 90.02795 * 4 3 2 6 6 S 1.69950 * 105.75539 * 179.72516 * 5 4 3 7 7 C 1.72304 * 94.56460 * 359.97438 * 6 5 4 8 8 S 1.76203 * 127.50099 * 179.97438 * 7 6 5 9 9 C 1.76194 * 100.00131 * 359.97438 * 8 7 6 10 10 N 1.32307 * 126.25883 * 0.02595 * 9 8 7 11 11 N 1.28514 * 110.20749 * 179.97438 * 10 9 8 12 12 C 1.33115 * 109.74749 * 0.02562 * 11 10 9 13 13 C 1.39784 * 126.57175 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00211 * 180.02562 * 13 12 11 15 15 C 1.40057 * 119.99760 * 0.02562 * 13 12 11 16 16 N 1.30835 * 119.99753 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99865 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47460 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46898 * 120.00147 * 17 15 13 20 20 H 1.48505 * 109.46690 * 239.99484 * 17 15 13 21 21 N 1.36721 * 126.25371 * 179.71071 * 9 8 7 22 22 C 1.46500 * 127.15259 * 359.97438 * 21 9 8 23 23 N 1.31164 * 121.05849 * 269.74226 * 4 3 2 24 24 H 1.09000 * 109.47051 * 60.00454 * 1 2 3 25 25 H 1.09006 * 109.46890 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46857 * 299.99647 * 1 2 3 27 27 H 1.08997 * 109.46766 * 239.99870 * 2 1 3 28 28 H 1.09005 * 109.46960 * 120.00028 * 2 1 3 29 29 H 1.08993 * 109.47203 * 60.00565 * 3 2 1 30 30 H 1.08993 * 109.47312 * 299.99309 * 3 2 1 31 31 H 0.96992 * 119.99324 * 179.97438 * 16 15 13 32 32 H 1.09004 * 109.47132 * 90.02319 * 22 21 9 33 33 H 1.09007 * 109.47042 * 210.02001 * 22 21 9 34 34 H 1.08996 * 109.47455 * 330.01832 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2184 1.4432 -1.1164 6 16 5.8578 1.4507 -0.6684 7 6 5.5374 1.4533 1.0245 8 16 6.7114 1.4603 2.3385 9 6 8.2092 1.4628 1.4105 10 7 8.3125 1.4603 0.0915 11 7 9.5495 1.4638 -0.2569 12 6 10.3220 1.4681 0.8271 13 6 11.7196 1.4723 0.8538 14 1 12.2417 1.4752 1.7992 15 6 12.4429 1.4726 -0.3455 16 7 11.8104 1.4685 -1.4908 17 14 14.3105 1.4773 -0.3099 18 1 14.7788 1.4810 1.0993 19 1 14.8218 0.2652 -0.9988 20 1 14.8156 2.6902 -1.0020 21 7 9.4771 1.4736 1.9219 22 6 9.8608 1.4860 3.3357 23 7 4.2242 1.4474 1.1227 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 12.3113 1.4690 -2.3214 32 1 9.9622 0.4614 3.6936 33 1 10.8119 2.0064 3.4495 34 1 9.0941 1.9993 3.9158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292551021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:35 Heat of formation + Delta-G solvation = 112.559547 kcal Electronic energy + Delta-G solvation = -20107.884142 eV Core-core repulsion = 16908.895941 eV Total energy + Delta-G solvation = -3198.988201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87734 -39.76155 -34.81212 -33.96867 -33.63351 -31.78027 -29.67548 -28.21892 -26.85738 -26.02395 -24.80992 -21.95223 -21.25274 -20.86212 -19.36345 -18.55934 -17.66781 -16.97971 -15.83330 -15.26265 -15.18445 -14.86941 -14.83844 -14.56674 -14.07005 -13.46991 -13.13309 -12.60314 -12.51407 -12.32378 -12.24183 -11.80008 -11.60413 -11.48587 -11.36869 -11.35359 -11.10561 -10.74833 -10.61922 -10.57043 -10.50173 -9.96445 -9.83018 -9.07207 -9.04912 -9.00547 -8.69631 -8.37965 -7.16449 -6.86785 -4.84758 0.72808 1.16406 1.47076 2.35234 2.46078 2.69065 2.87578 2.95691 3.00661 3.08427 3.69035 3.94925 4.13085 4.36380 4.94954 4.99965 5.07877 5.17396 5.31247 5.47251 5.64788 5.68394 5.73388 5.82310 5.86002 5.95864 6.15359 6.19188 6.26566 6.38221 6.64029 6.99050 7.17021 7.53272 7.88755 7.94194 8.45584 8.56649 10.04342 10.25607 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.003327 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.962010 B = 8413.613804 C = 9151.804389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.028 4.028 4 C 0.259 3.741 5 N -0.543 5.543 6 S 0.408 5.592 7 C -0.003 4.003 8 S 0.254 5.746 9 C -0.019 4.019 10 N -0.267 5.267 11 N -0.317 5.317 12 C 0.354 3.646 13 C -0.437 4.437 14 H 0.090 0.910 15 C 0.076 3.924 16 N -0.727 5.727 17 Si 0.924 3.076 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.271 1.271 21 N -0.509 5.509 22 C 0.097 3.903 23 N -0.510 5.510 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.283 0.717 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 -0.669 6.822 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.070 4.070 4 C -0.033 4.033 5 N -0.376 5.376 6 S 0.547 5.453 7 C -0.396 4.396 8 S 0.483 5.517 9 C -0.390 4.390 10 N -0.116 5.116 11 N -0.166 5.166 12 C 0.113 3.887 13 C -0.477 4.477 14 H 0.108 0.892 15 C -0.151 4.151 16 N -0.350 5.350 17 Si 0.748 3.252 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.196 1.196 21 N -0.211 5.211 22 C -0.048 4.048 23 N -0.238 5.238 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.536 -0.659 5.130 10.848 hybrid contribution 1.097 0.006 0.872 1.402 sum -8.438 -0.653 6.002 10.376 Atomic orbital electron populations 1.21748 0.95239 1.01737 1.01885 1.21468 0.95849 0.95583 1.02745 1.20178 0.84611 0.98487 1.03742 1.23269 0.99316 0.98063 0.82662 1.76986 1.05894 1.26679 1.28080 1.86849 1.02353 1.60326 0.95815 1.30212 0.98564 1.04402 1.06388 1.83035 0.84998 1.86306 0.97374 1.25642 0.90259 1.27008 0.96057 1.73647 1.17190 1.14957 1.05772 1.75507 0.92227 1.29170 1.19723 1.21677 0.93237 0.94177 0.79644 1.18246 0.86441 1.48137 0.94833 0.89227 1.25863 1.01520 0.93192 0.94523 1.69996 1.37895 1.28686 0.98444 0.85995 0.80667 0.78860 0.79698 1.18384 1.19544 1.19555 1.45860 1.03569 1.64570 1.07142 1.21605 1.01750 1.02128 0.79294 1.67475 1.02838 1.23131 1.30393 0.92600 0.92611 0.92546 0.91674 0.91522 0.89465 0.89609 0.90553 0.92024 0.89791 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 3 C -0.03 -0.36 5.75 -27.88 -0.16 -0.52 16 4 C 0.26 4.48 6.82 -159.07 -1.08 3.40 16 5 N -0.54 -10.39 12.16 29.58 0.36 -10.03 16 6 S 0.41 8.38 20.15 -107.50 -2.17 6.21 16 7 C 0.00 -0.06 7.91 52.70 0.42 0.36 16 8 S 0.25 4.46 22.24 -107.50 -2.39 2.07 16 9 C -0.02 -0.42 8.06 -87.30 -0.70 -1.12 16 10 N -0.27 -6.72 8.47 30.89 0.26 -6.46 16 11 N -0.32 -8.80 10.48 31.25 0.33 -8.47 16 12 C 0.35 9.06 7.53 -154.85 -1.17 7.89 16 13 C -0.44 -10.55 9.04 -38.32 -0.35 -10.90 16 14 H 0.09 1.94 7.31 -52.49 -0.38 1.55 16 15 C 0.08 1.79 5.50 -17.29 -0.10 1.70 16 16 N -0.73 -18.61 11.94 55.55 0.66 -17.95 16 17 Si 0.92 17.15 29.56 -169.99 -5.03 12.12 16 18 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 N -0.51 -11.06 3.26 -123.19 -0.40 -11.46 16 22 C 0.10 1.52 10.87 59.85 0.65 2.17 16 23 N -0.51 -9.33 10.60 -14.04 -0.15 -9.48 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.23 7.54 -51.92 -0.39 0.84 16 34 H 0.07 0.89 7.85 -51.93 -0.41 0.49 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -30.29 323.60 -9.62 -39.91 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -3.70 Total: -1.93 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.28 Total: 0.58 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: 1.06 Total: -63.84 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 16 Polarization: 12.84 SS G_CDS: -4.56 Total: 8.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.29 -9.62 -39.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292551021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.474 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds