Wall clock time and date at job start Tue Mar 31 2020 09:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46648 * 2 1 4 4 C 1.50705 * 109.46489 * 180.02562 * 3 2 1 5 5 N 1.30214 * 121.06112 * 90.02795 * 4 3 2 6 6 S 1.69950 * 105.75539 * 179.72516 * 5 4 3 7 7 C 1.72304 * 94.56460 * 359.97438 * 6 5 4 8 8 S 1.76203 * 127.50099 * 179.97438 * 7 6 5 9 9 C 1.76194 * 100.00131 * 359.97438 * 8 7 6 10 10 N 1.32307 * 126.25883 * 0.02595 * 9 8 7 11 11 N 1.28514 * 110.20749 * 179.97438 * 10 9 8 12 12 C 1.33115 * 109.74749 * 0.02562 * 11 10 9 13 13 C 1.39784 * 126.57175 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00211 * 180.02562 * 13 12 11 15 15 C 1.40057 * 119.99760 * 0.02562 * 13 12 11 16 16 N 1.30835 * 119.99753 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99865 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47460 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46898 * 120.00147 * 17 15 13 20 20 H 1.48505 * 109.46690 * 239.99484 * 17 15 13 21 21 N 1.36721 * 126.25371 * 179.71071 * 9 8 7 22 22 C 1.46500 * 127.15259 * 359.97438 * 21 9 8 23 23 N 1.31164 * 121.05849 * 269.74226 * 4 3 2 24 24 H 1.09000 * 109.47051 * 60.00454 * 1 2 3 25 25 H 1.09006 * 109.46890 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46857 * 299.99647 * 1 2 3 27 27 H 1.08997 * 109.46766 * 239.99870 * 2 1 3 28 28 H 1.09005 * 109.46960 * 120.00028 * 2 1 3 29 29 H 1.08993 * 109.47203 * 60.00565 * 3 2 1 30 30 H 1.08993 * 109.47312 * 299.99309 * 3 2 1 31 31 H 0.96992 * 119.99324 * 179.97438 * 16 15 13 32 32 H 1.09004 * 109.47132 * 90.02319 * 22 21 9 33 33 H 1.09007 * 109.47042 * 210.02001 * 22 21 9 34 34 H 1.08996 * 109.47455 * 330.01832 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2184 1.4432 -1.1164 6 16 5.8578 1.4507 -0.6684 7 6 5.5374 1.4533 1.0245 8 16 6.7114 1.4603 2.3385 9 6 8.2092 1.4628 1.4105 10 7 8.3125 1.4603 0.0915 11 7 9.5495 1.4638 -0.2569 12 6 10.3220 1.4681 0.8271 13 6 11.7196 1.4723 0.8538 14 1 12.2417 1.4752 1.7992 15 6 12.4429 1.4726 -0.3455 16 7 11.8104 1.4685 -1.4908 17 14 14.3105 1.4773 -0.3099 18 1 14.7788 1.4810 1.0993 19 1 14.8218 0.2652 -0.9988 20 1 14.8156 2.6902 -1.0020 21 7 9.4771 1.4736 1.9219 22 6 9.8608 1.4860 3.3357 23 7 4.2242 1.4474 1.1227 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 12.3113 1.4690 -2.3214 32 1 9.9622 0.4614 3.6936 33 1 10.8119 2.0064 3.4495 34 1 9.0941 1.9993 3.9158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292551021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:35 Heat of formation + Delta-G solvation = 94.970433 kcal Electronic energy + Delta-G solvation = -20108.646863 eV Core-core repulsion = 16908.895941 eV Total energy + Delta-G solvation = -3199.750922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.63970 -41.19460 -35.81984 -35.70697 -35.27192 -33.19893 -31.47768 -29.30255 -28.44141 -27.62066 -26.21440 -23.07984 -22.97620 -22.40862 -20.75698 -20.09263 -19.37879 -18.48398 -17.50535 -16.79891 -16.71633 -16.33023 -16.10833 -15.81679 -15.43883 -14.98688 -14.12564 -13.98182 -13.90760 -13.70611 -13.40221 -13.16761 -13.01296 -12.90216 -12.78447 -12.55083 -12.33070 -12.17721 -11.94627 -11.91868 -11.68138 -11.56697 -11.48434 -10.70815 -10.65800 -10.62200 -10.43882 -10.04840 -8.75770 -8.59837 -6.68005 -0.79685 -0.38752 -0.08231 0.85059 0.86799 1.04765 1.44168 1.45285 1.56134 1.61548 2.15027 2.33916 2.40268 3.04195 3.28921 4.00073 4.05515 4.10072 4.18426 4.48608 4.50613 4.63875 4.69791 4.72538 4.78331 4.87490 4.89491 4.95840 5.22105 5.25274 5.26324 5.43240 5.44614 5.87817 6.16904 6.41476 6.69851 6.81586 8.33226 8.46834 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.003327 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.962010 B = 8413.613804 C = 9151.804389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.027 4.027 4 C 0.260 3.740 5 N -0.551 5.551 6 S 0.344 5.656 7 C -0.010 4.010 8 S 0.337 5.663 9 C -0.016 4.016 10 N -0.300 5.300 11 N -0.372 5.372 12 C 0.328 3.672 13 C -0.458 4.458 14 H 0.111 0.889 15 C 0.030 3.970 16 N -0.780 5.780 17 Si 1.006 2.994 18 H -0.242 1.242 19 H -0.270 1.270 20 H -0.270 1.270 21 N -0.510 5.510 22 C 0.085 3.915 23 N -0.505 5.505 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.287 0.713 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -0.640 9.393 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.070 4.070 4 C -0.032 4.032 5 N -0.383 5.383 6 S 0.482 5.518 7 C -0.403 4.403 8 S 0.565 5.435 9 C -0.389 4.389 10 N -0.147 5.147 11 N -0.221 5.221 12 C 0.084 3.916 13 C -0.498 4.498 14 H 0.129 0.871 15 C -0.192 4.192 16 N -0.404 5.404 17 Si 0.825 3.175 18 H -0.165 1.165 19 H -0.195 1.195 20 H -0.195 1.195 21 N -0.212 5.212 22 C -0.058 4.058 23 N -0.234 5.234 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.268 -0.631 7.720 12.861 hybrid contribution 1.075 -0.008 0.220 1.097 sum -9.193 -0.639 7.940 12.164 Atomic orbital electron populations 1.21708 0.92725 1.02675 1.02871 1.21440 0.97925 0.94161 1.01716 1.20456 0.81306 0.99899 1.05311 1.24168 1.01217 0.95877 0.81914 1.77093 1.04611 1.27992 1.28626 1.87105 1.04387 1.62405 0.97860 1.30627 0.99407 1.04025 1.06285 1.82697 0.81252 1.85317 0.94244 1.26576 0.92460 1.23619 0.96225 1.73671 1.16584 1.16942 1.07506 1.75390 0.93476 1.31252 1.21944 1.22063 0.94178 0.94894 0.80482 1.18744 0.86340 1.48563 0.96111 0.87107 1.26988 1.06739 0.91801 0.93685 1.70139 1.40243 1.30581 0.99455 0.84805 0.73742 0.78558 0.80440 1.16491 1.19472 1.19453 1.46185 1.02820 1.63428 1.08744 1.22044 1.03343 1.04071 0.76301 1.67596 1.02157 1.23074 1.30544 0.91835 0.91756 0.91344 0.93084 0.92247 0.87487 0.88387 0.90280 0.90027 0.88676 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 71.98 0.71 -1.34 16 2 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 3 C -0.03 -0.65 5.75 29.85 0.17 -0.47 16 4 C 0.26 8.75 6.82 139.41 0.95 9.70 16 5 N -0.55 -21.23 12.16 -60.34 -0.73 -21.97 16 6 S 0.34 14.58 20.15 -56.49 -1.14 13.44 16 7 C -0.01 -0.38 7.91 130.26 1.03 0.65 16 8 S 0.34 11.18 22.24 -56.49 -1.26 9.93 16 9 C -0.02 -0.71 8.06 179.19 1.44 0.74 16 10 N -0.30 -15.62 8.47 -56.19 -0.48 -16.10 16 11 N -0.37 -21.58 10.48 -55.04 -0.58 -22.16 16 12 C 0.33 17.11 7.53 133.25 1.00 18.11 16 13 C -0.46 -22.29 9.04 23.09 0.21 -22.08 16 14 H 0.11 4.67 7.31 -2.91 -0.02 4.65 16 15 C 0.03 1.43 5.50 85.28 0.47 1.90 16 16 N -0.78 -41.64 11.94 21.85 0.26 -41.37 16 17 Si 1.01 35.05 29.56 68.60 2.03 37.08 16 18 H -0.24 -7.63 7.11 99.48 0.71 -6.93 16 19 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 20 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 21 N -0.51 -21.88 3.26 -543.67 -1.77 -23.65 16 22 C 0.08 2.44 10.87 127.77 1.39 3.83 16 23 N -0.51 -17.80 10.60 -198.33 -2.10 -19.90 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 32 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.09 2.55 7.54 -2.38 -0.02 2.53 16 34 H 0.10 2.20 7.85 -2.39 -0.02 2.18 16 Total: -1.00 -69.20 323.60 2.94 -66.26 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.14 Total: 9.58 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 7.56 Total: 8.85 kcal Atomic # 7 Polarization: -139.74 SS G_CDS: -5.40 Total: -145.14 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Atomic # 16 Polarization: 25.77 SS G_CDS: -2.39 Total: 23.37 kcal Total: -69.20 2.94 -66.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292551021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.234 kcal (2) G-P(sol) polarization free energy of solvation -69.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds