Wall clock time and date at job start Tue Mar 31 2020 10:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46994 * 2 1 4 4 C 1.52999 * 109.47144 * 239.99582 * 2 1 3 5 5 C 1.50694 * 109.47089 * 173.95621 * 4 2 1 6 6 C 1.38239 * 120.00960 * 275.44823 * 5 4 2 7 7 C 1.38217 * 120.01379 * 179.72134 * 6 5 4 8 8 C 1.38263 * 120.01739 * 0.54957 * 7 6 5 9 9 C 1.38195 * 120.01095 * 359.73173 * 8 7 6 10 10 C 1.38305 * 120.00337 * 95.72102 * 5 4 2 11 11 Br 1.89103 * 120.01136 * 359.97438 * 10 5 4 12 12 N 1.46901 * 109.46751 * 119.99516 * 2 1 3 13 13 C 1.46898 * 111.00569 * 283.52212 * 12 2 1 14 14 H 1.09010 * 109.46755 * 346.43546 * 13 12 2 15 15 C 1.53000 * 109.47426 * 106.43313 * 13 12 2 16 16 C 1.50692 * 109.47459 * 226.44115 * 13 12 2 17 17 H 1.08000 * 120.00010 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00102 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99968 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 119.99835 * 359.97438 * 18 16 13 21 21 H 1.48505 * 109.46794 * 90.00721 * 20 18 16 22 22 H 1.48500 * 109.47086 * 210.00057 * 20 18 16 23 23 H 1.48494 * 109.47094 * 330.00334 * 20 18 16 24 24 H 1.08997 * 109.47343 * 185.09366 * 1 2 3 25 25 H 1.09000 * 109.47110 * 65.09450 * 1 2 3 26 26 H 1.09005 * 109.47111 * 305.09261 * 1 2 3 27 27 H 1.09003 * 109.47095 * 293.95874 * 4 2 1 28 28 H 1.09002 * 109.46725 * 53.95472 * 4 2 1 29 29 H 1.08006 * 119.98926 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.99236 * 180.25786 * 7 6 5 31 31 H 1.08001 * 119.99775 * 179.74126 * 8 7 6 32 32 H 1.08008 * 120.00669 * 179.97438 * 9 8 7 33 33 H 1.00902 * 110.99860 * 159.56806 * 12 2 1 34 34 H 1.08992 * 109.47663 * 186.30159 * 15 13 12 35 35 H 1.09007 * 109.46861 * 306.30223 * 15 13 12 36 36 H 1.09003 * 109.46803 * 66.29534 * 15 13 12 37 37 H 0.97002 * 119.99523 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5395 -0.5931 -1.3263 6 6 4.1090 0.5313 -1.8941 7 6 5.4844 0.6516 -1.9596 8 6 6.2912 -0.3576 -1.4676 9 6 5.7228 -1.4847 -0.9050 10 6 4.3462 -1.6029 -0.8340 11 35 3.5678 -3.1445 -0.0635 12 7 2.0196 -0.6924 1.1995 13 6 1.8928 0.1607 2.3886 14 1 1.6926 1.1868 2.0799 15 6 0.7396 -0.3444 3.2582 16 6 3.1751 0.1151 3.1787 17 1 4.0016 -0.4877 2.8325 18 6 3.2929 0.8422 4.3443 19 7 4.4120 0.8020 5.0342 20 14 1.8631 1.8843 4.9436 21 1 0.9955 1.0701 5.8322 22 1 2.3841 3.0534 5.6966 23 1 1.0733 2.3578 3.7787 24 1 -0.3634 -1.0236 0.0912 25 1 -0.3633 0.4328 -0.9321 26 1 -0.3633 0.5908 0.8409 27 1 1.7677 -1.7755 -1.1967 28 1 1.5910 -0.2738 -2.1359 29 1 3.4790 1.3178 -2.2828 30 1 5.9289 1.5321 -2.3995 31 1 7.3658 -0.2652 -1.5227 32 1 6.3531 -2.2732 -0.5211 33 1 2.9724 -1.0006 1.0756 34 1 0.5730 0.3512 4.0806 35 1 -0.1654 -0.4173 2.6549 36 1 0.9897 -1.3270 3.6583 37 1 4.4949 1.3138 5.8540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309778733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:14 Heat of formation + Delta-G solvation = 26.055814 kcal Electronic energy + Delta-G solvation = -18576.597101 eV Core-core repulsion = 15785.881146 eV Total energy + Delta-G solvation = -2790.715955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.46954 -36.86253 -33.79787 -32.17082 -31.76574 -30.46930 -29.01217 -27.90590 -26.16571 -24.81018 -22.43000 -21.57587 -20.24478 -19.56217 -16.84716 -16.58041 -15.56535 -15.22518 -15.05714 -14.45569 -13.81922 -13.77852 -13.33887 -12.96322 -12.83162 -12.42261 -12.04129 -11.93426 -11.73321 -11.58361 -11.42285 -11.04154 -10.93033 -10.74131 -10.55182 -10.48318 -10.26197 -9.92224 -9.62439 -9.40047 -8.94316 -8.69326 -8.55415 -8.39248 -7.35158 -6.05114 -4.04038 1.25412 1.41346 1.92865 3.30730 3.39102 3.41871 3.74164 4.43023 4.80857 4.86436 5.04885 5.10400 5.29486 5.38225 5.43640 5.47487 5.63036 5.77678 5.87592 5.94274 6.07837 6.15618 6.20346 6.34606 6.45499 6.51045 6.52333 6.56524 6.68944 6.71663 6.92691 6.94117 6.95302 7.51576 7.65202 8.09374 8.48534 8.69917 9.00924 9.58134 11.08000 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.006227 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.507516 B = 4495.642587 C = 4668.911474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.089 3.911 3 H 0.034 0.966 4 C -0.094 4.094 5 C -0.052 4.052 6 C -0.114 4.114 7 C -0.104 4.104 8 C -0.121 4.121 9 C -0.087 4.087 10 C -0.087 4.087 11 Br -0.032 7.032 12 N -0.673 5.673 13 C 0.180 3.820 14 H 0.008 0.992 15 C -0.135 4.135 16 C -0.523 4.523 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.269 1.269 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.343 0.657 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -4.345 -16.047 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.052 0.948 4 C -0.132 4.132 5 C -0.054 4.054 6 C -0.132 4.132 7 C -0.123 4.123 8 C -0.140 4.140 9 C -0.107 4.107 10 C -0.167 4.167 11 Br 0.054 6.946 12 N -0.308 5.308 13 C 0.070 3.930 14 H 0.026 0.974 15 C -0.193 4.193 16 C -0.561 4.561 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.227 1.227 23 H -0.194 1.194 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.165 0.835 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.794 -5.207 -15.481 16.432 hybrid contribution 0.309 1.669 0.331 1.729 sum -1.485 -3.538 -15.150 15.629 Atomic orbital electron populations 1.21834 0.95141 1.02166 1.00417 1.21467 0.95243 0.95384 0.90028 0.94761 1.21045 0.89691 1.03669 0.98748 1.19860 0.96308 0.93052 0.96135 1.20999 0.95080 0.97045 1.00117 1.21207 0.93683 0.98562 0.98822 1.21100 1.00013 0.93743 0.99171 1.21112 0.92897 0.98630 0.98041 1.21859 0.95177 0.95320 1.04335 1.96714 1.83096 1.33159 1.81638 1.60832 1.28480 1.40180 1.01337 1.19550 0.94811 0.90382 0.88218 0.97420 1.22105 0.98021 1.00793 0.98361 1.21349 0.98378 1.28766 1.07613 0.90744 1.24938 0.95603 0.96186 0.96307 1.69910 1.25712 1.41934 1.16216 0.86804 0.82535 0.79536 0.78950 1.20565 1.22725 1.19410 0.92047 0.93581 0.92579 0.89112 0.90599 0.85530 0.85731 0.85469 0.85134 0.83528 0.95189 0.94873 0.92741 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.75 37.16 0.32 -1.79 16 2 C 0.09 1.56 2.50 -67.71 -0.17 1.39 16 3 H 0.03 0.65 7.64 -51.93 -0.40 0.25 16 4 C -0.09 -1.37 4.67 -27.89 -0.13 -1.50 16 5 C -0.05 -0.78 4.66 -104.60 -0.49 -1.27 16 6 C -0.11 -1.55 9.72 -39.59 -0.38 -1.93 16 7 C -0.10 -1.31 10.05 -39.58 -0.40 -1.71 16 8 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 9 C -0.09 -1.26 9.79 -39.56 -0.39 -1.64 16 10 C -0.09 -1.38 5.31 -39.52 -0.21 -1.59 16 11 Br -0.03 -0.51 29.61 -68.01 -2.01 -2.52 16 12 N -0.67 -14.11 5.84 -100.95 -0.59 -14.70 16 13 C 0.18 4.37 1.87 -68.87 -0.13 4.24 16 14 H 0.01 0.21 6.37 -51.92 -0.33 -0.12 16 15 C -0.13 -3.11 8.82 37.16 0.33 -2.78 16 16 C -0.52 -14.95 9.18 -34.44 -0.32 -15.27 16 17 H 0.07 2.32 7.61 -52.49 -0.40 1.92 16 18 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 19 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 20 Si 0.89 22.63 24.31 -169.99 -4.13 18.49 16 21 H -0.28 -6.94 6.93 56.52 0.39 -6.54 16 22 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.93 6.87 -51.93 -0.36 0.57 16 27 H 0.09 1.33 6.39 -51.93 -0.33 1.00 16 28 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 29 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.34 7.43 3.95 -39.29 -0.16 7.28 16 34 H 0.03 0.70 3.46 -51.93 -0.18 0.52 16 35 H 0.03 0.67 6.62 -51.93 -0.34 0.32 16 36 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -31.02 307.08 -8.84 -39.86 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.05 Total: 5.09 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.45 Total: -23.80 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.18 Total: -41.75 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.13 Total: 18.49 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.01 Total: -2.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.02 -8.84 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309778733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.918 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds