Wall clock time and date at job start Tue Mar 31 2020 09:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38267 * 119.99070 * 2 1 4 4 C 1.38200 * 120.01051 * 180.27368 * 3 2 1 5 5 C 1.38351 * 119.98809 * 359.74740 * 4 3 2 6 6 Br 1.89095 * 120.00692 * 179.97438 * 5 4 3 7 7 C 1.38303 * 119.98116 * 0.02562 * 5 4 3 8 8 C 1.38224 * 119.99191 * 179.76717 * 2 1 3 9 9 C 1.50698 * 119.99233 * 0.02562 * 8 2 1 10 10 N 1.46896 * 109.47220 * 285.28472 * 9 8 2 11 11 C 1.46901 * 111.00105 * 290.54305 * 10 9 8 12 12 C 1.46902 * 111.00169 * 166.58691 * 10 9 8 13 13 H 1.09001 * 109.47142 * 59.99887 * 12 10 9 14 14 C 1.53001 * 109.47191 * 300.00093 * 12 10 9 15 15 C 1.50694 * 109.47426 * 180.02562 * 12 10 9 16 16 H 1.08009 * 120.00004 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00324 * 179.97438 * 15 12 10 18 18 N 1.31510 * 119.99785 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00078 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46973 * 90.00410 * 19 17 15 21 21 H 1.48498 * 109.47222 * 210.00146 * 19 17 15 22 22 H 1.48500 * 109.47247 * 330.00257 * 19 17 15 23 23 H 1.09004 * 109.47003 * 264.70132 * 1 2 3 24 24 H 1.08996 * 109.47358 * 24.70326 * 1 2 3 25 25 H 1.09000 * 109.47251 * 144.70244 * 1 2 3 26 26 H 1.08002 * 119.99480 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.00757 * 179.72303 * 4 3 2 28 28 H 1.07995 * 120.00732 * 180.02562 * 7 5 4 29 29 H 1.09000 * 109.46932 * 165.28567 * 9 8 2 30 30 H 1.09007 * 109.47325 * 45.28681 * 9 8 2 31 31 H 1.08992 * 109.46883 * 54.70531 * 11 10 9 32 32 H 1.09008 * 109.46817 * 174.70193 * 11 10 9 33 33 H 1.09000 * 109.46707 * 294.69904 * 11 10 9 34 34 H 1.09003 * 109.47431 * 299.99947 * 14 12 10 35 35 H 1.09008 * 109.46791 * 59.99701 * 14 12 10 36 36 H 1.08999 * 109.47303 * 179.97438 * 14 12 10 37 37 H 0.96997 * 120.00177 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5801 1.1980 -0.0057 5 6 4.2720 0.0000 -0.0062 6 35 6.1629 0.0000 -0.0147 7 6 3.5803 -1.1976 -0.0014 8 6 2.1979 -1.1971 0.0049 9 6 1.4440 -2.5020 0.0096 10 7 0.8824 -2.7382 1.3462 11 6 1.9440 -3.0267 2.3199 12 6 -0.1120 -3.8191 1.3160 13 1 0.3603 -4.7377 0.9680 14 6 -1.2496 -3.4390 0.3661 15 6 -0.6652 -4.0317 2.7015 16 1 -0.3135 -3.4244 3.5225 17 6 -1.6210 -5.0009 2.9210 18 7 -2.0496 -5.7400 1.9213 19 14 -2.3061 -5.2649 4.6387 20 1 -3.4963 -4.3988 4.8354 21 1 -2.6972 -6.6881 4.8023 22 1 -1.2696 -4.9177 5.6438 23 1 -0.3633 -0.0949 1.0233 24 1 -0.3634 0.9336 -0.4295 25 1 -0.3634 -0.8387 -0.5938 26 1 1.6578 2.1327 0.0004 27 1 4.1198 2.1334 -0.0102 28 1 4.1199 -2.1331 -0.0013 29 1 2.1231 -3.3148 -0.2481 30 1 0.6364 -2.4578 -0.7212 31 1 2.6791 -2.2221 2.3048 32 1 1.5109 -3.1046 3.3172 33 1 2.4294 -3.9674 2.0600 34 1 -1.7220 -2.5203 0.7140 35 1 -0.8498 -3.2849 -0.6362 36 1 -1.9873 -4.2411 0.3433 37 1 -2.7218 -6.4221 2.0758 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313764749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:54 Heat of formation + Delta-G solvation = 26.705445 kcal Electronic energy + Delta-G solvation = -18282.140294 eV Core-core repulsion = 15491.452509 eV Total energy + Delta-G solvation = -2790.687785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62621 -36.83586 -33.45309 -32.82910 -31.28413 -30.32529 -29.08258 -27.12395 -26.00745 -24.63964 -23.38169 -21.97007 -20.44590 -19.24610 -16.44792 -16.09565 -15.76442 -15.21780 -14.75381 -14.20754 -13.83265 -13.51848 -13.24684 -13.04155 -12.54167 -12.41722 -12.28493 -12.09126 -11.78006 -11.23150 -11.06804 -10.98852 -10.92601 -10.73386 -10.59991 -10.45058 -10.27886 -10.13298 -10.06556 -9.80740 -8.97181 -8.73017 -8.45571 -8.28302 -7.21992 -6.03711 -4.08151 1.23865 1.40966 1.66972 3.29238 3.35924 3.39037 3.70694 4.39518 4.81184 4.94349 5.07493 5.12820 5.28350 5.37529 5.42113 5.68220 5.81654 5.90678 5.98395 6.07632 6.17043 6.27137 6.28160 6.38054 6.42584 6.49946 6.75442 6.79037 6.87314 6.99208 7.00601 7.10876 7.47686 7.67536 7.80479 8.15504 8.28616 8.55548 8.98307 9.57122 11.03049 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.003545 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.846300 B = 7896.923081 C = 8388.525766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.040 4.040 3 C -0.122 4.122 4 C -0.097 4.097 5 C -0.099 4.099 6 Br -0.067 7.067 7 C -0.085 4.085 8 C -0.059 4.059 9 C 0.082 3.918 10 N -0.527 5.527 11 C 0.038 3.962 12 C 0.212 3.788 13 H -0.002 1.002 14 C -0.134 4.134 15 C -0.502 4.502 16 H 0.063 0.937 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.012 0.988 34 H 0.036 0.964 35 H 0.008 0.992 36 H 0.085 0.915 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.431 12.796 -6.087 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.041 4.041 3 C -0.141 4.141 4 C -0.117 4.117 5 C -0.178 4.178 6 Br 0.018 6.982 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.045 4.045 10 N -0.252 5.252 11 C -0.110 4.110 12 C 0.106 3.894 13 H 0.016 0.984 14 C -0.192 4.192 15 C -0.541 4.541 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.104 0.896 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.759 13.044 -5.970 19.198 hybrid contribution -0.281 -0.964 0.691 1.219 sum 12.478 12.079 -5.279 18.151 Atomic orbital electron populations 1.20848 0.90194 1.01797 1.04033 1.19962 0.96956 0.91970 0.95228 1.21026 0.93268 0.97935 1.01840 1.20958 0.94359 0.96312 1.00046 1.21605 0.89307 0.96350 1.10544 1.96645 1.04326 1.99339 1.97923 1.21011 0.93898 0.96519 0.99061 1.19901 0.92273 0.95860 0.98005 1.21140 0.97312 0.91420 0.94675 1.62155 1.13359 1.46488 1.03181 1.22204 0.93430 0.97172 0.98214 1.19269 0.87841 0.86060 0.96197 0.98445 1.21894 1.00858 1.01768 0.94638 1.21134 1.21955 1.17521 0.93471 0.91872 1.24918 0.96490 0.95785 0.96981 1.69883 1.30738 1.22144 1.30500 0.86532 0.79343 0.77182 0.84546 1.20673 1.21365 1.19961 0.89462 0.92659 0.90735 0.85492 0.85632 0.85561 0.95180 0.89255 0.93903 0.90672 0.96986 0.94472 0.97363 0.89630 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.39 36.00 0.34 -1.22 16 2 C -0.04 -0.58 5.88 -104.62 -0.62 -1.19 16 3 C -0.12 -1.52 9.68 -39.58 -0.38 -1.90 16 4 C -0.10 -1.19 9.79 -39.55 -0.39 -1.57 16 5 C -0.10 -1.32 6.22 -39.52 -0.25 -1.56 16 6 Br -0.07 -0.80 33.70 -68.01 -2.29 -3.09 16 7 C -0.08 -1.22 8.79 -39.56 -0.35 -1.57 16 8 C -0.06 -0.91 4.55 -104.63 -0.48 -1.39 16 9 C 0.08 1.45 4.27 -4.98 -0.02 1.43 16 10 N -0.53 -10.79 4.46 -237.73 -1.06 -11.85 16 11 C 0.04 0.75 9.06 60.07 0.54 1.30 16 12 C 0.21 5.13 2.06 -68.87 -0.14 4.99 16 13 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 14 C -0.13 -3.07 8.78 37.16 0.33 -2.75 16 15 C -0.50 -13.32 7.94 -34.44 -0.27 -13.59 16 16 H 0.06 1.68 6.40 -52.48 -0.34 1.35 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -24.90 11.32 55.43 0.63 -24.28 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 25 H 0.07 1.10 6.47 -51.93 -0.34 0.77 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.76 8.00 -52.49 -0.42 1.34 16 29 H 0.03 0.53 7.89 -51.93 -0.41 0.12 16 30 H 0.09 1.56 4.29 -51.92 -0.22 1.34 16 31 H 0.04 0.76 6.76 -51.93 -0.35 0.41 16 32 H 0.07 1.58 6.29 -51.92 -0.33 1.25 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.01 0.16 6.14 -51.92 -0.32 -0.16 16 36 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -27.09 315.39 -9.89 -36.99 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.12 Total: -0.95 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.78 Total: -17.54 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.43 Total: -36.13 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.29 Total: -3.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.09 -9.89 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313764749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.695 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds