Wall clock time and date at job start Tue Mar 31 2020 10:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46931 * 2 1 4 4 N 1.46500 * 109.47023 * 187.14959 * 3 2 1 5 5 C 1.36930 * 120.00150 * 96.56262 * 4 3 2 6 6 H 1.08003 * 120.00288 * 162.37172 * 5 4 3 7 7 C 1.38811 * 120.00047 * 342.36509 * 5 4 3 8 8 N 1.31622 * 120.00076 * 349.51500 * 7 5 4 9 9 Si 1.86803 * 120.00289 * 169.51322 * 7 5 4 10 10 H 1.48505 * 109.46986 * 90.00237 * 9 7 5 11 11 H 1.48493 * 109.47596 * 210.00416 * 9 7 5 12 12 H 1.48497 * 109.47025 * 330.00519 * 9 7 5 13 13 C 1.46498 * 119.99854 * 276.55562 * 4 3 2 14 14 C 1.50695 * 109.47551 * 265.94851 * 13 4 3 15 15 C 1.38243 * 119.99463 * 356.32915 * 14 13 4 16 16 C 1.38304 * 119.98928 * 180.27459 * 15 14 13 17 17 Br 1.89103 * 120.00667 * 179.74683 * 16 15 14 18 18 C 1.38349 * 119.98260 * 359.72849 * 16 15 14 19 19 C 1.38197 * 119.98767 * 359.97438 * 18 16 15 20 20 C 1.38222 * 119.99748 * 176.07681 * 14 13 4 21 21 C 1.50693 * 119.99033 * 0.02562 * 20 14 13 22 22 H 1.09005 * 109.46981 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47800 * 299.99987 * 1 2 3 24 24 H 1.09000 * 109.47307 * 60.00433 * 1 2 3 25 25 H 1.08994 * 109.47800 * 240.00013 * 2 1 3 26 26 H 1.09000 * 109.47307 * 119.99567 * 2 1 3 27 27 H 1.09001 * 109.46959 * 67.14608 * 3 2 1 28 28 H 1.08994 * 109.46920 * 307.14822 * 3 2 1 29 29 H 0.97002 * 119.99903 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47303 * 145.94405 * 13 4 3 31 31 H 1.09006 * 109.47413 * 25.94663 * 13 4 3 32 32 H 1.07997 * 120.00462 * 0.02562 * 15 14 13 33 33 H 1.07995 * 120.00519 * 179.97438 * 18 16 15 34 34 H 1.07995 * 119.99157 * 179.97438 * 19 18 16 35 35 H 1.09000 * 109.47314 * 275.56035 * 21 20 14 36 36 H 1.09005 * 109.47321 * 155.55630 * 21 20 14 37 37 H 1.08999 * 109.47292 * 35.55659 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4948 1.4462 -0.1719 5 6 4.0368 1.6321 -1.4155 6 1 5.0735 1.9179 -1.5156 7 6 3.2539 1.4532 -2.5477 8 7 2.0600 0.9092 -2.4430 9 14 3.8947 1.9846 -4.2200 10 1 4.6261 0.8567 -4.8511 11 1 2.7540 2.3802 -5.0845 12 1 4.8136 3.1392 -4.0539 13 6 4.3697 1.2510 0.9868 14 6 4.7727 2.5920 1.5437 15 6 4.3748 3.7527 0.9067 16 6 4.7495 4.9833 1.4147 17 35 4.2115 6.5711 0.5398 18 6 5.5176 5.0523 2.5633 19 6 5.9097 3.8916 3.2028 20 6 5.5357 2.6615 2.6941 21 6 5.9649 1.3962 3.3909 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7847 1.9181 0.9470 28 1 1.5759 1.9919 -0.8191 29 1 1.5127 0.7845 -3.2342 30 1 5.2604 0.7020 0.6811 31 1 3.8386 0.6846 1.7519 32 1 3.7749 3.6983 0.0104 33 1 5.8107 6.0130 2.9601 34 1 6.5097 3.9454 4.0992 35 1 5.1685 1.0586 4.0541 36 1 6.8654 1.5899 3.9738 37 1 6.1712 0.6249 2.6490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313798459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:03 Heat of formation + Delta-G solvation = 41.821565 kcal Electronic energy + Delta-G solvation = -18467.221117 eV Core-core repulsion = 15677.188816 eV Total energy + Delta-G solvation = -2790.032301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22937 -36.16342 -33.30150 -32.20311 -31.64928 -30.08516 -29.66558 -26.45457 -25.46825 -25.44997 -22.46040 -21.03336 -20.35619 -19.53360 -16.80005 -15.90340 -15.50624 -14.76632 -14.20732 -14.01821 -13.62605 -13.31415 -13.19432 -12.81672 -12.68386 -12.26864 -12.13391 -12.08966 -11.53636 -11.31479 -10.92165 -10.78318 -10.69604 -10.58652 -10.35158 -10.23500 -10.03185 -9.95401 -9.87054 -9.71760 -9.27001 -8.38212 -8.28454 -8.04029 -6.79923 -5.70336 -3.18569 1.50931 1.79726 2.04756 3.38218 3.45940 3.48188 4.03724 4.48324 5.06397 5.20119 5.30561 5.42073 5.50755 5.52343 5.78754 5.80089 5.93809 6.16254 6.24220 6.25837 6.31871 6.35588 6.37964 6.51884 6.61572 6.69733 6.77258 6.87716 6.96609 7.15524 7.25597 7.32517 7.39600 7.70295 7.84499 8.14154 8.41461 9.26905 9.84883 10.30865 11.28836 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.006352 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.143016 B = 4406.856280 C = 5533.906253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.176 3.824 4 N -0.596 5.596 5 C -0.249 4.249 6 H 0.069 0.931 7 C 0.001 3.999 8 N -0.899 5.899 9 Si 0.901 3.099 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.182 3.818 14 C -0.086 4.086 15 C -0.056 4.056 16 C -0.100 4.100 17 Br -0.071 7.071 18 C -0.107 4.107 19 C -0.127 4.127 20 C -0.083 4.083 21 C -0.113 4.113 22 H 0.029 0.971 23 H 0.027 0.973 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.009 0.991 27 H -0.003 1.003 28 H 0.092 0.908 29 H 0.251 0.749 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 6.249 10.233 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C 0.051 3.949 4 N -0.316 5.316 5 C -0.378 4.378 6 H 0.087 0.913 7 C -0.196 4.196 8 N -0.545 5.545 9 Si 0.731 3.269 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.054 3.946 14 C -0.090 4.090 15 C -0.075 4.075 16 C -0.179 4.179 17 Br 0.014 6.986 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.083 4.083 21 C -0.169 4.169 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.028 0.972 27 H 0.015 0.985 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.174 0.826 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.977 6.815 9.734 12.531 hybrid contribution 0.436 -0.010 -0.684 0.811 sum 4.413 6.805 9.050 12.153 Atomic orbital electron populations 1.21581 0.98485 0.98995 1.00102 1.22083 0.93126 1.00341 1.00381 1.20816 0.82449 0.94785 0.96826 1.44104 1.01354 1.83398 1.02763 1.19218 0.96220 1.39771 0.82612 0.91295 1.24876 0.97247 0.99895 0.97608 1.70125 1.10534 1.46358 1.27474 0.86304 0.77768 0.78413 0.84384 1.21661 1.21661 1.20582 1.19731 0.94716 0.89954 0.90203 1.21283 0.95556 0.98626 0.93505 1.21477 0.97022 0.89115 0.99911 1.21809 1.05327 0.91914 0.98873 1.96610 1.90833 1.32026 1.79138 1.20886 0.98474 0.98643 0.94727 1.20849 1.01836 0.91652 1.00219 1.19891 0.97833 0.95026 0.95595 1.20775 1.00843 0.95178 1.00142 0.95162 0.95345 0.92611 0.88465 0.97195 0.98468 0.89044 0.93869 0.92106 0.92590 0.82633 0.86149 0.86181 0.91264 0.92090 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.91 37.15 0.37 -2.22 16 2 C -0.12 -2.64 5.53 -26.73 -0.15 -2.79 16 3 C 0.18 4.07 4.81 -4.04 -0.02 4.05 16 4 N -0.60 -13.83 1.43 -174.61 -0.25 -14.08 16 5 C -0.25 -6.36 8.53 -15.06 -0.13 -6.49 16 6 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 7 C 0.00 0.03 5.15 -17.43 -0.09 -0.06 16 8 N -0.90 -23.80 8.08 55.49 0.45 -23.35 16 9 Si 0.90 21.26 29.57 -169.99 -5.03 16.23 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.18 3.56 4.81 -5.20 -0.03 3.54 16 14 C -0.09 -1.57 5.87 -104.63 -0.61 -2.18 16 15 C -0.06 -1.08 8.87 -39.56 -0.35 -1.43 16 16 C -0.10 -1.73 6.22 -39.52 -0.25 -1.98 16 17 Br -0.07 -1.14 33.70 -68.01 -2.29 -3.43 16 18 C -0.11 -1.61 9.79 -39.56 -0.39 -1.99 16 19 C -0.13 -1.78 9.68 -39.59 -0.38 -2.16 16 20 C -0.08 -1.26 5.88 -104.62 -0.62 -1.88 16 21 C -0.11 -1.37 9.45 36.00 0.34 -1.03 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.10 2.47 6.32 -51.93 -0.33 2.14 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.00 -0.06 8.12 -51.93 -0.42 -0.49 16 28 H 0.09 2.36 6.01 -51.93 -0.31 2.05 16 29 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.06 1.19 7.63 -51.93 -0.40 0.79 16 31 H 0.06 1.04 7.95 -51.93 -0.41 0.63 16 32 H 0.16 3.48 6.16 -52.49 -0.32 3.16 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 37 H 0.07 0.88 6.97 -51.93 -0.36 0.51 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -25.98 318.81 -10.10 -36.08 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.48 Total: 0.38 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.30 Total: -16.64 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.20 Total: -37.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 35 Polarization: -1.14 SS G_CDS: -2.29 Total: -3.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.98 -10.10 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313798459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.901 kcal (2) G-P(sol) polarization free energy of solvation -25.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds