Wall clock time and date at job start Tue Mar 31 2020 09:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36732 * 127.19508 * 2 1 4 4 S 1.76205 * 126.36318 * 359.97438 * 3 2 1 5 5 C 1.81000 * 99.99973 * 180.32668 * 4 3 2 6 6 C 1.53002 * 109.47461 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.46825 * 305.00185 * 6 5 4 8 8 O 1.42898 * 109.46999 * 64.99772 * 6 5 4 9 9 C 1.50692 * 109.47412 * 185.00051 * 6 5 4 10 10 H 1.08007 * 120.00119 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00156 * 179.97438 * 9 6 5 12 12 N 1.31512 * 120.00007 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 120.00232 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.47121 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47115 * 119.99987 * 13 11 9 16 16 H 1.48494 * 109.47088 * 240.00332 * 13 11 9 17 17 N 1.31352 * 107.27273 * 180.28507 * 3 2 1 18 18 N 1.28506 * 110.15138 * 359.73638 * 17 3 2 19 19 C 1.31491 * 109.95569 * 0.02562 * 18 17 3 20 20 C 1.47177 * 126.49643 * 179.97438 * 19 18 17 21 21 C 1.35090 * 125.28561 * 15.00759 * 20 19 18 22 22 C 1.37868 * 114.66071 * 180.02562 * 21 20 19 23 23 C 1.33662 * 115.09325 * 359.97438 * 22 21 20 24 24 S 1.75859 * 109.79734 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47106 * 270.15096 * 1 2 3 26 26 H 1.09006 * 109.46845 * 30.14368 * 1 2 3 27 27 H 1.08998 * 109.47215 * 150.14699 * 1 2 3 28 28 H 1.09000 * 109.47339 * 300.00298 * 5 4 3 29 29 H 1.08996 * 109.47112 * 59.99835 * 5 4 3 30 30 H 0.96706 * 113.99911 * 60.00438 * 8 6 5 31 31 H 0.96998 * 120.00417 * 179.97438 * 12 11 9 32 32 H 1.08002 * 122.66996 * 0.02562 * 21 20 19 33 33 H 1.07998 * 122.45372 * 179.97438 * 22 21 20 34 34 H 1.08005 * 125.10441 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2916 1.0892 0.0000 4 16 1.7928 2.7792 -0.0006 5 6 3.4135 3.5851 -0.0104 6 6 3.2279 5.1039 -0.0117 7 1 2.5942 5.3917 -0.8506 8 8 2.6114 5.5094 1.2120 9 6 4.5711 5.7740 -0.1437 10 1 5.4677 5.1765 -0.2187 11 6 4.6556 7.1499 -0.1687 12 7 3.5639 7.8776 -0.0778 13 14 6.3208 7.9807 -0.3315 14 1 7.3835 6.9470 -0.4165 15 1 6.3407 8.8127 -1.5614 16 1 6.5618 8.8428 0.8533 17 7 3.5265 0.6416 -0.0062 18 7 3.5316 -0.6434 -0.0046 19 6 2.2975 -1.0972 0.0023 20 6 1.8841 -2.5097 0.0057 21 6 2.6887 -3.5575 0.2880 22 6 2.0723 -4.7891 0.2260 23 6 0.7770 -4.7589 -0.1023 24 16 0.2659 -3.0956 -0.3575 25 1 -0.3633 0.0027 1.0277 26 1 -0.3633 0.8888 -0.5161 27 1 -0.3633 -0.8913 -0.5115 28 1 3.9722 3.2885 0.8772 29 1 3.9630 3.2851 -0.9026 30 1 3.1212 5.2849 2.0025 31 1 3.6233 8.8456 -0.0950 32 1 3.7318 -3.4398 0.5421 33 1 2.5976 -5.7109 0.4279 34 1 0.1397 -5.6258 -0.1968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352147304.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:13 Heat of formation + Delta-G solvation = 61.976141 kcal Electronic energy + Delta-G solvation = -19910.663910 eV Core-core repulsion = 16677.189497 eV Total energy + Delta-G solvation = -3233.474413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.050 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.70907 -38.04807 -36.00466 -35.11159 -32.22559 -32.03512 -29.86846 -28.67256 -27.80566 -25.45303 -24.78856 -22.77020 -22.06855 -20.94276 -19.33225 -18.34423 -17.40839 -17.01302 -16.49681 -16.05473 -15.78515 -14.68065 -14.48107 -14.39628 -14.20873 -13.80716 -13.73862 -13.37280 -13.30000 -13.00044 -12.48040 -12.45742 -11.72833 -11.63288 -11.33970 -11.24905 -10.96225 -10.94578 -10.61611 -10.38505 -10.32169 -10.21340 -9.94423 -9.24666 -8.92500 -8.82061 -8.67130 -8.37710 -7.27856 -6.10797 -4.30162 0.24014 1.02487 1.31357 1.49397 1.72077 2.39033 2.44661 2.69514 2.98580 3.24499 3.33077 3.37915 4.01966 4.34170 4.35027 4.68752 4.79475 4.89080 5.10608 5.13852 5.16840 5.25382 5.51704 5.78313 5.80500 5.81229 5.92672 5.98565 6.06993 6.14637 6.54950 6.64609 7.47765 7.74144 7.98737 8.60849 8.71546 9.22660 9.45921 10.93421 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.002721 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.383209 B =10286.550162 C =10872.324620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.469 5.469 3 C 0.177 3.823 4 S -0.002 6.002 5 C -0.112 4.112 6 C 0.244 3.756 7 H 0.067 0.933 8 O -0.560 6.560 9 C -0.567 4.567 10 H 0.063 0.937 11 C 0.081 3.919 12 N -0.857 5.857 13 Si 0.895 3.105 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.282 1.282 17 N -0.290 5.290 18 N -0.257 5.257 19 C 0.228 3.772 20 C -0.113 4.113 21 C -0.089 4.089 22 C -0.131 4.131 23 C -0.209 4.209 24 S 0.121 5.879 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.350 0.650 31 H 0.262 0.738 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -23.076 0.468 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.164 5.164 3 C -0.196 4.196 4 S 0.229 5.771 5 C -0.261 4.261 6 C 0.184 3.816 7 H 0.085 0.915 8 O -0.363 6.363 9 C -0.607 4.607 10 H 0.081 0.919 11 C -0.126 4.126 12 N -0.492 5.492 13 Si 0.722 3.278 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.208 1.208 17 N -0.135 5.135 18 N -0.100 5.100 19 C -0.039 4.039 20 C -0.232 4.232 21 C -0.123 4.123 22 C -0.161 4.161 23 C -0.346 4.346 24 S 0.384 5.616 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.194 0.806 31 H 0.072 0.928 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.162 -21.481 -0.359 24.211 hybrid contribution 2.435 -1.081 0.561 2.723 sum -8.727 -22.562 0.201 24.192 Atomic orbital electron populations 1.22224 0.75143 1.04823 1.04767 1.46384 1.08398 1.04832 1.56799 1.27495 0.89631 0.96959 1.05507 1.85910 1.16365 0.83762 1.91112 1.24963 0.92224 1.02512 1.06422 1.19261 0.94703 0.81987 0.85642 0.91498 1.86584 1.50161 1.83996 1.15532 1.21522 0.92495 0.91775 1.54893 0.91926 1.25035 0.96704 0.97364 0.93542 1.70080 1.27263 1.05596 1.46308 0.86504 0.83930 0.79543 0.77813 1.19482 1.20769 1.20758 1.74757 1.15627 1.02318 1.20781 1.74379 1.15777 1.03294 1.16500 1.21624 0.87113 0.86939 1.08211 1.21315 0.98020 0.91229 1.12642 1.20425 1.01667 0.90172 1.00070 1.20103 0.94151 0.98760 1.03102 1.25937 0.99900 1.00044 1.08689 1.84087 1.08926 0.99822 1.68756 0.89155 0.87851 0.89670 0.89418 0.88793 0.80591 0.92793 0.82911 0.83451 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.66 59.85 0.64 1.36 16 2 N -0.47 -6.87 3.24 -121.57 -0.39 -7.26 16 3 C 0.18 3.12 8.07 -88.10 -0.71 2.41 16 4 S 0.00 -0.04 21.59 -107.50 -2.32 -2.36 16 5 C -0.11 -2.31 4.83 37.16 0.18 -2.13 16 6 C 0.24 5.94 2.82 -27.89 -0.08 5.86 16 7 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 8 O -0.56 -13.73 12.48 -35.23 -0.44 -14.17 16 9 C -0.57 -15.10 8.76 -34.44 -0.30 -15.40 16 10 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 11 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 12 N -0.86 -24.60 12.84 55.43 0.71 -23.89 16 13 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 N -0.29 -5.73 11.58 30.73 0.36 -5.37 16 18 N -0.26 -4.74 12.20 32.50 0.40 -4.35 16 19 C 0.23 3.50 7.87 -153.73 -1.21 2.29 16 20 C -0.11 -1.34 6.38 -37.07 -0.24 -1.58 16 21 C -0.09 -0.93 10.08 -40.84 -0.41 -1.34 16 22 C -0.13 -1.00 10.16 -41.32 -0.42 -1.42 16 23 C -0.21 -1.45 11.22 29.13 0.33 -1.12 16 24 S 0.12 1.02 20.20 -107.50 -2.17 -1.16 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 0.93 7.86 -51.93 -0.41 0.52 16 27 H 0.09 0.68 5.17 -45.35 -0.23 0.45 16 28 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 29 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 30 H 0.35 7.62 9.04 45.56 0.41 8.03 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -32.46 326.11 -9.02 -41.48 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -2.73 Total: 5.33 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.32 Total: -8.97 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 1.07 Total: -40.87 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.44 Total: -14.17 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -4.49 Total: -3.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.46 -9.02 -41.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352147304.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.455 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds