Wall clock time and date at job start Tue Mar 31 2020 09:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47303 * 2 1 4 4 H 1.09003 * 109.46324 * 305.00033 * 3 2 1 5 5 C 1.50702 * 109.47294 * 185.00158 * 3 2 1 6 6 H 1.07999 * 119.99550 * 239.99727 * 5 3 2 7 7 C 1.37877 * 119.99929 * 59.99415 * 5 3 2 8 8 N 1.31514 * 120.00259 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99707 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47137 * 60.00506 * 9 7 5 11 11 H 1.48504 * 109.46950 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47503 * 300.00382 * 9 7 5 13 13 N 1.46498 * 109.47081 * 64.99743 * 3 2 1 14 14 C 1.34774 * 119.99896 * 275.00214 * 13 3 2 15 15 O 1.21583 * 120.00498 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99746 * 180.02562 * 14 13 3 17 17 C 1.38996 * 119.99921 * 179.97438 * 16 14 13 18 18 N 1.28301 * 125.00261 * 180.02562 * 17 16 14 19 19 C 1.36475 * 117.85312 * 180.02562 * 18 17 16 20 20 C 1.46551 * 135.26783 * 180.02562 * 19 18 17 21 21 C 1.31758 * 114.93110 * 179.97438 * 20 19 18 22 22 S 1.75239 * 110.91584 * 359.97438 * 21 20 19 23 23 C 1.36402 * 112.96165 * 359.97438 * 19 18 17 24 24 S 1.75682 * 125.00011 * 0.02896 * 17 16 14 25 25 H 1.08995 * 109.47483 * 60.00110 * 1 2 3 26 26 H 1.08998 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47077 * 300.00357 * 1 2 3 28 28 H 1.08996 * 109.47309 * 239.99535 * 2 1 3 29 29 H 1.09001 * 109.47431 * 119.99474 * 2 1 3 30 30 H 0.97001 * 120.00137 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99713 * 95.00224 * 13 3 2 32 32 H 0.96993 * 120.00343 * 359.97438 * 16 14 13 33 33 H 1.07997 * 122.53455 * 359.97438 * 20 19 18 34 34 H 1.07997 * 124.54058 * 180.27153 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3977 0.2177 -2.6509 12 1 6.4995 2.2815 -1.3822 13 7 1.6524 2.0976 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3412 2.6327 0.4317 16 7 0.0788 3.2675 2.5183 17 6 -1.1765 3.8526 2.6368 18 7 -1.6138 4.4504 3.6844 19 6 -2.8736 4.9734 3.6409 20 6 -3.7291 5.7074 4.5775 21 6 -4.9162 6.0326 4.1074 22 16 -5.1115 5.4714 2.4589 23 6 -3.4930 4.7703 2.4427 24 16 -2.3976 3.8824 1.3742 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8292 -0.0605 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 0.6982 3.2932 3.2642 33 1 -3.4105 5.9625 5.5774 34 1 -5.6664 6.5767 4.6620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354777689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:24 Heat of formation + Delta-G solvation = 42.063621 kcal Electronic energy + Delta-G solvation = -20517.233037 eV Core-core repulsion = 17282.895152 eV Total energy + Delta-G solvation = -3234.337885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.050 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.30763 -39.28240 -36.15839 -35.12622 -33.77996 -32.49338 -30.94241 -28.61082 -27.10408 -24.90153 -23.29172 -22.20969 -21.43843 -20.02845 -19.59212 -19.08442 -18.10611 -16.92532 -16.23396 -15.95704 -15.73943 -15.15325 -14.51792 -14.46746 -14.29343 -13.96408 -13.56366 -12.88093 -12.78144 -12.72199 -12.05194 -11.66411 -11.48687 -11.35628 -11.09791 -11.04599 -10.91791 -10.47559 -10.35304 -10.20746 -9.82037 -9.69271 -9.63258 -9.61106 -9.19952 -8.63702 -8.29320 -7.96636 -7.79110 -6.22793 -4.33142 0.66997 0.79968 1.45612 1.60572 1.76841 2.04354 2.52102 2.92401 3.20011 3.26064 3.27043 3.53828 4.06006 4.25411 4.72105 4.95206 5.09322 5.10567 5.63444 5.84777 5.91695 6.29091 6.29735 6.34944 6.50080 6.61614 6.93952 7.11143 7.12271 7.25127 7.49521 7.56777 7.73531 7.79306 8.04406 8.44103 8.61280 8.85575 9.34034 10.82478 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.037029 B = 0.002998 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.984202 B = 9336.402109 C = 9676.636752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.285 3.715 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.692 3.308 15 O -0.558 6.558 16 N -0.642 5.642 17 C 0.336 3.664 18 N -0.509 5.509 19 C 0.090 3.910 20 C -0.079 4.079 21 C -0.205 4.205 22 S 0.166 5.834 23 C -0.354 4.354 24 S 0.267 5.733 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.033 0.967 30 H 0.267 0.733 31 H 0.392 0.608 32 H 0.417 0.583 33 H 0.148 0.852 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.772 7.902 10.796 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.184 3.816 4 H 0.072 0.928 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.352 5.352 14 C 0.391 3.609 15 O -0.435 6.435 16 N -0.296 5.296 17 C -0.042 4.042 18 N -0.232 5.232 19 C -0.043 4.043 20 C -0.112 4.112 21 C -0.342 4.342 22 S 0.422 5.578 23 C -0.589 4.589 24 S 0.512 5.488 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.121 0.879 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.225 0.775 32 H 0.256 0.744 33 H 0.166 0.834 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.141 7.406 8.062 17.883 hybrid contribution 2.518 0.320 2.556 3.602 sum -11.623 7.727 10.618 17.537 Atomic orbital electron populations 1.21832 0.98213 0.98309 1.01145 1.21983 0.92723 0.99580 1.02600 1.18889 0.94404 0.89039 0.79268 0.92775 1.21139 0.90307 1.39695 1.06615 0.91957 1.24861 0.98781 0.94593 0.95247 1.69870 1.35387 1.37160 1.09283 0.86473 0.84509 0.78390 0.77545 1.20106 1.21053 1.20128 1.45861 1.12237 1.57240 1.19865 1.16065 0.84527 0.79047 0.81215 1.90820 1.51182 1.64269 1.37250 1.42217 1.12829 1.56903 1.17669 1.23276 0.91631 0.96237 0.93018 1.66112 1.13497 1.17156 1.26475 1.19762 0.89428 1.02571 0.92519 1.20357 0.91926 0.99253 0.99691 1.25061 1.01315 1.08133 0.99659 1.83731 1.07619 1.55603 1.10878 1.29447 1.06995 1.16820 1.05639 1.86248 1.01166 1.51658 1.09734 0.92910 0.95619 0.94586 0.87941 0.94828 0.92309 0.77499 0.74434 0.83414 0.80790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.15 0.32 -2.57 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16 3 C 0.29 6.64 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.36 8.73 -34.44 -0.30 -13.66 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.51 11.29 55.43 0.63 -22.88 16 9 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.70 -13.19 5.03 -59.81 -0.30 -13.49 16 14 C 0.69 12.72 7.09 -86.92 -0.62 12.10 16 15 O -0.56 -11.68 10.95 5.29 0.06 -11.63 16 16 N -0.64 -9.82 5.41 -16.60 -0.09 -9.91 16 17 C 0.34 5.48 8.33 -88.42 -0.74 4.74 16 18 N -0.51 -8.19 10.66 -10.03 -0.11 -8.30 16 19 C 0.09 1.33 7.54 -83.11 -0.63 0.70 16 20 C -0.08 -0.89 10.43 -38.12 -0.40 -1.29 16 21 C -0.20 -1.89 11.05 28.85 0.32 -1.57 16 22 S 0.17 1.81 23.27 -107.50 -2.50 -0.70 16 23 C -0.35 -5.14 7.74 30.07 0.23 -4.91 16 24 S 0.27 4.31 20.48 -107.50 -2.20 2.10 16 25 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.73 5.65 -51.93 -0.29 0.44 16 28 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.39 6.23 8.55 -40.82 -0.35 5.88 16 32 H 0.42 5.10 8.83 -40.82 -0.36 4.74 16 33 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -28.80 313.20 -10.37 -39.16 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -3.34 Total: 7.55 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.20 Total: -1.40 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.13 Total: -54.58 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.06 Total: -11.63 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -4.70 Total: 1.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.80 -10.37 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354777689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.229 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds