Wall clock time and date at job start Tue Mar 31 2020 09:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99439 * 2 1 4 4 H 1.48502 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47504 * 299.99952 * 3 2 1 6 6 H 1.48507 * 109.47361 * 60.00029 * 3 2 1 7 7 C 1.38809 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99493 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00001 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47205 * 325.00416 * 10 9 7 12 12 C 1.50707 * 109.46938 * 205.00263 * 10 9 7 13 13 C 1.38264 * 119.94209 * 140.00236 * 12 10 9 14 14 C 1.38145 * 120.05437 * 180.02562 * 13 12 10 15 15 C 1.38734 * 119.94237 * 0.25588 * 14 13 12 16 16 O 1.35904 * 120.05067 * 179.74240 * 15 14 13 17 17 C 1.42903 * 116.99686 * 180.02562 * 16 15 14 18 18 F 1.39902 * 109.46741 * 300.00002 * 17 16 15 19 19 F 1.39900 * 109.47365 * 59.99728 * 17 16 15 20 20 C 1.38735 * 119.88958 * 359.47324 * 15 14 13 21 21 C 1.38137 * 119.94094 * 0.54351 * 20 15 14 22 22 C 1.53001 * 109.47089 * 85.00654 * 10 9 7 23 23 F 1.39897 * 109.47225 * 180.02562 * 22 10 9 24 24 F 1.39905 * 109.46844 * 299.99823 * 22 10 9 25 25 F 1.39900 * 109.47518 * 59.99505 * 22 10 9 26 26 H 0.96995 * 120.00643 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00011 * 0.02562 * 9 7 2 28 28 H 1.07999 * 119.97244 * 359.97438 * 13 12 10 29 29 H 1.08002 * 120.02435 * 179.97438 * 14 13 12 30 30 H 1.08998 * 109.47132 * 180.02562 * 17 16 15 31 31 H 1.07992 * 120.02678 * 180.25528 * 20 15 14 32 32 H 1.08007 * 119.97477 * 179.72701 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 1 2.9691 -3.5504 -0.5899 12 6 1.1944 -4.7356 -0.6011 13 6 1.7535 -5.6777 -1.4447 14 6 0.9636 -6.6674 -1.9969 15 6 -0.3927 -6.7124 -1.7085 16 8 -1.1728 -7.6819 -2.2547 17 6 -2.5606 -7.6665 -1.9140 18 9 -2.7022 -7.8056 -0.5292 19 9 -3.1274 -6.4541 -2.3213 20 6 -0.9501 -5.7693 -0.8573 21 6 -0.1560 -4.7815 -0.3079 22 6 2.4222 -4.0356 1.4365 23 9 3.1223 -5.2467 1.4365 24 9 3.2242 -3.0339 1.9940 25 9 1.2533 -4.1720 2.1930 26 1 -0.4851 0.8399 0.0004 27 1 0.3558 -2.3881 -0.0005 28 1 2.8084 -5.6392 -1.6728 29 1 1.4007 -7.4028 -2.6562 30 1 -3.0669 -8.4913 -2.4154 31 1 -2.0048 -5.8047 -0.6280 32 1 -0.5903 -4.0444 0.3513 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357803433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:50 Heat of formation + Delta-G solvation = -260.211110 kcal Electronic energy + Delta-G solvation = -26376.903455 eV Core-core repulsion = 21558.715206 eV Total energy + Delta-G solvation = -4818.188250 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.069 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.46358 -49.14197 -47.45671 -46.70708 -46.58698 -39.96827 -37.85045 -35.07404 -32.19088 -30.92572 -29.71610 -27.35059 -25.90523 -23.99065 -23.08584 -22.36917 -20.70153 -19.03739 -18.44771 -18.02487 -17.72502 -17.60139 -17.23868 -16.75473 -16.06479 -15.48970 -14.81845 -14.66736 -14.36912 -14.05753 -14.03869 -13.76950 -13.69891 -13.48449 -13.35085 -13.24492 -13.10128 -12.96015 -12.87327 -12.80341 -12.77435 -12.19571 -12.16222 -11.48546 -11.23708 -10.98158 -10.91456 -10.77376 -10.19668 -9.96338 -9.24325 -8.85236 -8.22003 -7.39828 -6.02319 -3.35894 1.37081 1.50572 2.45944 3.32428 3.33858 3.40259 3.42586 3.61871 3.91361 4.13388 4.37127 4.49335 4.70741 4.82605 4.90684 4.93217 5.03777 5.29327 5.35780 5.50088 5.56887 5.63242 5.82075 5.96517 6.18835 6.26906 6.43882 6.62510 6.80632 7.15200 7.53050 8.10406 9.25241 9.65465 10.02658 11.18232 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.004583 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.260782 B = 6108.718493 C = 7040.107220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.003 3.997 3 Si 0.916 3.084 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.263 4.263 8 H 0.082 0.918 9 N -0.688 5.688 10 C 0.184 3.816 11 H 0.100 0.900 12 C -0.109 4.109 13 C -0.067 4.067 14 C -0.137 4.137 15 C 0.098 3.902 16 O -0.323 6.323 17 C 0.411 3.589 18 F -0.199 7.199 19 F -0.197 7.197 20 C -0.188 4.188 21 C -0.052 4.052 22 C 0.409 3.591 23 F -0.206 7.206 24 F -0.182 7.182 25 F -0.191 7.191 26 H 0.261 0.739 27 H 0.395 0.605 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.179 0.821 31 H 0.132 0.868 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -16.193 -4.333 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.195 4.195 3 Si 0.746 3.254 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.100 0.900 9 N -0.325 5.325 10 C 0.067 3.933 11 H 0.118 0.882 12 C -0.110 4.110 13 C -0.085 4.085 14 C -0.156 4.156 15 C 0.056 3.944 16 O -0.241 6.241 17 C 0.321 3.679 18 F -0.181 7.181 19 F -0.179 7.179 20 C -0.207 4.207 21 C -0.071 4.071 22 C 0.349 3.651 23 F -0.188 7.188 24 F -0.163 7.163 25 F -0.173 7.173 26 H 0.071 0.929 27 H 0.232 0.768 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.195 0.805 31 H 0.150 0.850 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.084 -16.070 -4.424 16.798 hybrid contribution -0.136 1.059 0.630 1.239 sum -2.220 -15.011 -3.795 15.642 Atomic orbital electron populations 1.69678 1.05366 1.26534 1.54901 1.24864 0.95576 0.98257 1.00818 0.86000 0.79049 0.83031 0.77354 1.20035 1.21470 1.21435 1.19367 0.91577 0.83134 1.45230 0.90013 1.42574 1.06425 0.98755 1.84728 1.20184 0.97242 0.87208 0.88683 0.88236 1.19831 0.94568 0.96721 0.99855 1.20817 0.99808 0.92757 0.95150 1.20289 0.90097 1.01279 1.03909 1.18852 0.91032 0.89049 0.95505 1.86569 1.18733 1.50564 1.68270 1.23299 0.81013 0.86216 0.77390 1.93105 1.95311 1.95847 1.33834 1.93120 1.84961 1.49799 1.90037 1.21457 1.01060 0.97256 1.00888 1.20916 0.92817 0.96268 0.97071 1.23514 0.73961 0.73228 0.94353 1.93069 1.80385 1.48115 1.97236 1.93133 1.74326 1.61278 1.87611 1.93075 1.49212 1.95610 1.79413 0.92901 0.76847 0.84678 0.84909 0.80513 0.84997 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 13.06 55.49 0.72 -25.82 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.95 9.21 -15.06 -0.14 -7.09 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.69 -16.52 4.98 -54.55 -0.27 -16.79 16 10 C 0.18 3.62 2.56 -69.08 -0.18 3.45 16 11 H 0.10 1.84 7.94 -51.93 -0.41 1.43 16 12 C -0.11 -1.90 4.64 -104.60 -0.48 -2.39 16 13 C -0.07 -0.97 9.66 -39.61 -0.38 -1.36 16 14 C -0.14 -1.86 9.99 -39.43 -0.39 -2.25 16 15 C 0.10 1.43 6.48 -39.21 -0.25 1.17 16 16 O -0.32 -3.88 10.43 -19.44 -0.20 -4.09 16 17 C 0.41 3.85 5.98 101.05 0.60 4.45 16 18 F -0.20 -2.25 15.56 2.25 0.04 -2.22 16 19 F -0.20 -2.32 15.60 2.25 0.04 -2.28 16 20 C -0.19 -2.99 8.26 -39.43 -0.33 -3.31 16 21 C -0.05 -0.93 8.29 -39.61 -0.33 -1.25 16 22 C 0.41 8.23 2.82 37.16 0.10 8.34 16 23 F -0.21 -3.76 17.03 2.25 0.04 -3.72 16 24 F -0.18 -3.99 16.54 2.25 0.04 -3.95 16 25 F -0.19 -4.03 16.18 2.25 0.04 -4.00 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.39 9.98 6.06 -40.82 -0.25 9.73 16 28 H 0.14 1.63 8.03 -52.49 -0.42 1.21 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.18 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.13 1.98 5.10 -52.49 -0.27 1.71 16 32 H 0.14 2.57 6.78 -52.48 -0.36 2.21 16 LS Contribution 299.89 15.07 4.52 4.52 Total: -1.00 -30.57 299.89 -4.04 -34.61 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.10 Total: 7.43 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.87 Total: -0.26 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.45 Total: -42.61 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.20 Total: -4.09 kcal Atomic # 9 Polarization: -16.35 SS G_CDS: 0.18 Total: -16.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.57 -4.04 -34.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357803433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.601 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds