Wall clock time and date at job start Tue Mar 31 2020 09:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38276 * 127.14909 * 2 1 4 4 C 1.39774 * 126.56708 * 359.97310 * 3 2 1 5 5 H 1.07995 * 120.00404 * 5.90194 * 4 3 2 6 6 C 1.40071 * 119.99991 * 185.90271 * 4 3 2 7 7 N 1.30818 * 119.99797 * 6.45233 * 6 4 3 8 8 Si 1.86802 * 120.00245 * 186.44817 * 6 4 3 9 9 H 1.48499 * 109.47015 * 265.01437 * 8 6 4 10 10 H 1.48495 * 109.46964 * 25.01099 * 8 6 4 11 11 H 1.48494 * 109.47351 * 145.01287 * 8 6 4 12 12 N 1.33131 * 106.86610 * 179.71138 * 3 2 1 13 13 N 1.28512 * 109.73599 * 0.26307 * 12 3 2 14 14 C 1.32309 * 110.21082 * 359.97438 * 13 12 3 15 15 S 1.76203 * 126.25457 * 180.02562 * 14 13 12 16 16 C 1.76196 * 100.00253 * 359.97438 * 15 14 13 17 17 C 1.40406 * 120.27019 * 269.72241 * 16 15 14 18 18 C 1.43204 * 120.13475 * 359.96864 * 17 16 15 19 19 N 4.99456 * 106.36566 * 226.00791 * 2 1 3 20 20 C 1.39610 * 119.72679 * 179.70139 * 17 16 15 21 21 C 1.38103 * 120.26410 * 0.59844 * 20 17 16 22 22 C 1.38094 * 120.55824 * 359.67388 * 21 20 17 23 23 C 1.39618 * 120.26794 * 0.02562 * 22 21 20 24 24 C 1.43207 * 120.13761 * 180.02562 * 23 22 21 25 25 N 4.97763 * 106.08511 * 133.94340 * 2 1 3 26 26 H 1.09005 * 109.46755 * 90.00651 * 1 2 3 27 27 H 1.09004 * 109.47119 * 210.00376 * 1 2 3 28 28 H 1.09004 * 109.47017 * 330.00564 * 1 2 3 29 29 H 0.97004 * 120.00067 * 180.02562 * 7 6 4 30 30 H 1.07992 * 119.87010 * 180.27449 * 20 17 16 31 31 H 1.08001 * 119.72387 * 179.69806 * 21 20 17 32 32 H 1.08002 * 119.87086 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3001 1.1022 0.0000 4 6 1.9082 2.4438 -0.0005 5 1 0.8638 2.7014 0.0952 6 6 2.8701 3.4544 -0.1252 7 7 4.1175 3.1437 -0.3674 8 14 2.3716 5.2457 0.0543 9 1 2.1056 5.8224 -1.2881 10 1 1.1437 5.3370 0.8843 11 1 3.4691 6.0017 0.7092 12 7 3.5488 0.6407 0.0064 13 7 3.5366 -0.6444 0.0047 14 6 2.2907 -1.0896 -0.0023 15 16 1.7876 -2.7783 -0.0064 16 6 3.3631 -3.5671 0.0005 17 6 3.9993 -3.8879 -1.2093 18 6 3.3700 -3.5761 -2.4573 19 7 2.8724 -3.3285 -3.4477 20 6 5.2504 -4.5072 -1.1906 21 6 5.8566 -4.8152 0.0114 22 6 5.2386 -4.5099 1.2080 23 6 3.9901 -3.8850 1.2159 24 6 3.3520 -3.5691 2.4584 25 7 2.8442 -3.3190 3.4437 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 4.7837 3.8435 -0.4534 30 1 5.7438 -4.7510 -2.1198 31 1 6.8224 -5.2987 0.0157 32 1 5.7230 -4.7554 2.1416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360106341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:11 Heat of formation + Delta-G solvation = 163.287993 kcal Electronic energy + Delta-G solvation = -21658.526406 eV Core-core repulsion = 18326.294005 eV Total energy + Delta-G solvation = -3332.232402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 311.054 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59366 -39.65609 -36.68858 -35.97638 -33.76021 -33.39819 -31.78555 -31.59215 -29.37457 -26.57916 -25.62794 -24.45015 -24.00389 -20.98175 -20.73704 -20.24869 -17.57548 -17.24439 -16.99319 -16.09124 -15.81399 -15.38558 -14.75809 -14.69407 -14.31558 -14.02374 -13.45180 -13.45025 -13.26133 -13.11521 -12.99779 -12.51503 -12.37717 -12.34559 -12.15662 -11.92900 -11.85866 -11.44720 -11.33196 -11.00534 -10.82341 -10.44356 -9.81653 -9.69173 -9.21175 -9.13586 -8.83527 -8.61032 -8.46820 -7.07048 -6.72338 -4.64142 0.38732 0.46128 1.71035 2.50279 2.60652 2.66959 2.85246 2.87454 3.04051 3.08105 3.28092 3.37622 3.67699 3.82998 3.92283 3.93073 4.15583 4.35117 4.66221 4.69307 4.98909 5.14587 5.26293 5.33203 5.47412 5.78190 5.83321 5.84115 5.95048 5.99211 6.31477 6.66806 6.83050 7.17490 7.40715 7.55566 7.57880 7.79630 8.12198 8.63975 8.78282 10.21079 10.54213 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.004447 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.529692 B = 6294.337014 C = 6468.948667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.513 5.513 3 C 0.352 3.648 4 C -0.446 4.446 5 H 0.085 0.915 6 C 0.080 3.920 7 N -0.735 5.735 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.261 1.261 11 H -0.273 1.273 12 N -0.331 5.331 13 N -0.268 5.268 14 C 0.024 3.976 15 S 0.057 5.943 16 C -0.029 4.029 17 C 0.035 3.965 18 C 0.255 3.745 19 N -0.393 5.393 20 C -0.056 4.056 21 C -0.094 4.094 22 C -0.056 4.056 23 C 0.034 3.966 24 C 0.255 3.745 25 N -0.393 5.393 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.281 0.719 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -14.161 0.526 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.216 5.216 3 C 0.109 3.891 4 C -0.486 4.486 5 H 0.103 0.897 6 C -0.146 4.146 7 N -0.359 5.359 8 Si 0.744 3.256 9 H -0.194 1.194 10 H -0.185 1.185 11 H -0.198 1.198 12 N -0.180 5.180 13 N -0.114 5.114 14 C -0.346 4.346 15 S 0.290 5.710 16 C -0.146 4.146 17 C 0.028 3.972 18 C -0.061 4.061 19 N -0.067 5.067 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.079 4.079 23 C 0.028 3.972 24 C -0.061 4.061 25 N -0.068 5.068 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.670 -13.800 0.485 13.825 hybrid contribution -0.093 1.506 0.050 1.510 sum 0.577 -12.294 0.535 12.319 Atomic orbital electron populations 1.21523 0.78462 1.02728 1.01783 1.45980 1.06074 1.05108 1.64398 1.21600 0.84710 0.88358 0.94436 1.18123 0.95379 0.86448 1.48666 0.89685 1.25793 0.94296 1.01392 0.93095 1.69984 1.01686 1.35220 1.28988 0.86102 0.79456 0.80752 0.79260 1.19413 1.18523 1.19824 1.75449 1.15279 0.97790 1.29461 1.74533 1.14759 1.07581 1.14554 1.25267 0.91951 0.92089 1.25327 1.83459 1.00925 0.91677 1.94919 1.21840 0.99932 0.99993 0.92852 1.16122 0.94351 1.00790 0.85891 1.25150 0.93992 0.94386 0.92616 1.81169 1.07205 1.06724 1.11625 1.21399 0.91975 0.94728 0.99747 1.21104 1.00239 0.98963 0.90929 1.21397 0.91951 0.94743 0.99793 1.16124 0.94384 1.00795 0.85919 1.25181 0.93943 0.94347 0.92635 1.81193 1.07220 1.06802 1.11596 0.92342 0.91728 0.90141 0.90848 0.83734 0.83452 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.89 59.85 0.65 2.52 16 2 N -0.51 -12.52 3.26 -123.19 -0.40 -12.92 16 3 C 0.35 9.85 7.50 -154.86 -1.16 8.69 16 4 C -0.45 -11.84 9.05 -38.32 -0.35 -12.18 16 5 H 0.09 2.05 7.26 -52.49 -0.38 1.67 16 6 C 0.08 2.05 5.49 -17.30 -0.09 1.95 16 7 N -0.74 -20.09 12.00 55.56 0.67 -19.42 16 8 Si 0.92 18.56 29.57 -169.99 -5.03 13.53 16 9 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 10 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 N -0.33 -9.86 10.56 31.25 0.33 -9.53 16 13 N -0.27 -7.17 11.60 30.89 0.36 -6.81 16 14 C 0.02 0.57 8.07 -87.31 -0.70 -0.14 16 15 S 0.06 1.03 19.75 -107.50 -2.12 -1.09 16 16 C -0.03 -0.44 5.08 -37.95 -0.19 -0.64 16 17 C 0.03 0.47 5.75 -106.64 -0.61 -0.14 16 18 C 0.26 4.08 14.27 -22.48 -0.32 3.76 16 19 N -0.39 -7.05 18.54 41.83 0.78 -6.28 16 20 C -0.06 -0.51 9.74 -39.12 -0.38 -0.89 16 21 C -0.09 -0.67 10.00 -39.68 -0.40 -1.07 16 22 C -0.06 -0.51 9.74 -39.12 -0.38 -0.89 16 23 C 0.03 0.46 5.75 -106.64 -0.61 -0.15 16 24 C 0.26 4.05 14.28 -22.46 -0.32 3.73 16 25 N -0.39 -6.99 18.54 41.85 0.78 -6.21 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.07 7.85 -51.93 -0.41 0.66 16 28 H 0.08 1.41 7.48 -51.93 -0.39 1.02 16 29 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -35.77 323.94 -6.64 -42.41 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -2.00 Total: -3.13 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -4.88 Total: 4.56 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 2.50 Total: -61.16 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.12 Total: -1.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.77 -6.64 -42.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360106341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.701 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds