Wall clock time and date at job start Tue Mar 31 2020 09:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.50693 * 109.47486 * 179.72204 * 5 3 2 7 7 C 1.38323 * 119.92373 * 89.99585 * 6 5 3 8 8 C 1.38059 * 120.08530 * 179.97438 * 7 6 5 9 9 C 1.39000 * 119.91580 * 0.02842 * 8 7 6 10 10 S 1.76200 * 120.07779 * 180.02562 * 9 8 7 11 11 C 1.81394 * 103.00043 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47396 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99734 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00343 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00028 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99948 * 359.97438 * 14 12 11 17 17 H 1.48511 * 109.46841 * 90.00151 * 16 14 12 18 18 H 1.48497 * 109.47020 * 209.99904 * 16 14 12 19 19 H 1.48496 * 109.47113 * 330.00387 * 16 14 12 20 20 C 1.38946 * 119.84190 * 359.97438 * 9 8 7 21 21 N 1.48002 * 120.04326 * 179.97438 * 20 9 8 22 22 O 1.21797 * 120.00456 * 180.02562 * 21 20 9 23 23 O 1.21800 * 119.99844 * 0.02562 * 21 20 9 24 24 C 1.38115 * 119.92011 * 359.72737 * 20 9 8 25 25 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 29 29 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 30 30 H 1.08004 * 119.95781 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.04067 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47489 * 300.00168 * 11 10 9 33 33 H 1.08997 * 109.47387 * 60.00035 * 11 10 9 34 34 H 0.96996 * 119.99852 * 179.97438 * 15 14 12 35 35 H 1.07997 * 119.95921 * 180.27415 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 3.9935 2.7201 -0.0118 7 6 4.1938 3.3850 1.1845 8 6 4.5858 4.7088 1.1832 9 6 4.7785 5.3736 -0.0222 10 16 5.2793 7.0629 -0.0287 11 6 5.4023 7.4589 1.7372 12 6 5.8280 8.8952 1.9016 13 1 6.0071 9.5083 1.0307 14 6 5.9899 9.4262 3.1636 15 7 6.3619 10.6795 3.3070 16 14 5.6809 8.3655 4.6699 17 1 6.9415 7.6866 5.0642 18 1 5.2081 9.2201 5.7885 19 1 4.6477 7.3467 4.3543 20 6 4.5762 4.7026 -1.2219 21 7 4.7796 5.4063 -2.5079 22 8 4.6017 4.8175 -3.5592 23 8 5.1249 6.5743 -2.5151 24 6 4.1902 3.3765 -1.2129 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 3.9595 0.7833 0.8836 29 1 3.9525 0.7785 -0.8964 30 1 4.0434 2.8680 2.1207 31 1 4.7424 5.2272 2.1177 32 1 4.4319 7.3115 2.2112 33 1 6.1384 6.8056 2.2057 34 1 6.4754 11.0531 4.1949 35 1 4.0371 2.8530 -2.1451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413474713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:32 Heat of formation + Delta-G solvation = -62.897936 kcal Electronic energy + Delta-G solvation = -22565.776891 eV Core-core repulsion = 18851.841910 eV Total energy + Delta-G solvation = -3713.934981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.85799 -40.88790 -39.30093 -36.81223 -36.22649 -33.62024 -33.26031 -31.91957 -29.68130 -29.23046 -27.32732 -26.39977 -23.29394 -22.92626 -21.98432 -21.06213 -18.96932 -18.34949 -18.01574 -17.42035 -17.21810 -16.95620 -16.91406 -16.82185 -15.69021 -15.02876 -14.67305 -14.12632 -14.06064 -13.88982 -13.65472 -13.45623 -12.82026 -12.74380 -12.61796 -12.41590 -12.31490 -11.75561 -11.44147 -11.16908 -11.02096 -11.01381 -10.87970 -10.81222 -10.76201 -10.28358 -9.84312 -9.81362 -9.58255 -9.07558 -8.86681 -7.16743 -6.33511 -4.38903 0.03812 0.77288 1.54815 1.61688 1.85784 1.88008 2.35934 3.06518 3.11544 3.13937 3.21902 3.25034 4.07380 4.15674 4.33159 4.53408 4.58150 4.71153 4.74395 4.82700 4.88893 4.96297 5.04712 5.10800 5.16826 5.46955 5.57465 5.75870 5.96594 6.01524 6.24860 6.28275 6.36601 6.69997 7.20140 7.39128 7.99721 8.10586 8.66857 9.20350 10.77997 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.003982 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.142074 B = 7029.874443 C = 8604.945669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.457 3.543 4 O -0.493 6.493 5 C -0.063 4.063 6 C -0.114 4.114 7 C -0.029 4.029 8 C -0.141 4.141 9 C -0.036 4.036 10 S 0.039 5.961 11 C -0.026 4.026 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.085 3.915 15 N -0.883 5.883 16 Si 0.877 3.123 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.051 4.051 21 N 0.037 4.963 22 O -0.194 6.194 23 O -0.136 6.136 24 C -0.015 4.015 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.271 0.729 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 -23.656 -3.507 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.298 3.702 4 O -0.379 6.379 5 C -0.100 4.100 6 C -0.120 4.120 7 C -0.051 4.051 8 C -0.166 4.166 9 C -0.154 4.154 10 S 0.296 5.704 11 C -0.174 4.174 12 C -0.561 4.561 13 H 0.105 0.895 14 C -0.121 4.121 15 N -0.520 5.520 16 Si 0.703 3.297 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.145 4.145 21 N 0.547 4.453 22 O -0.399 6.399 23 O -0.352 6.352 24 C -0.036 4.036 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.167 0.833 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.276 -22.555 -3.714 23.989 hybrid contribution -0.603 -1.035 1.705 2.084 sum -7.878 -23.590 -2.009 24.951 Atomic orbital electron populations 1.23286 0.76070 1.03720 1.02773 1.86489 1.23648 1.33360 1.84327 1.23736 0.91978 0.81502 0.72950 1.90750 1.66984 1.36252 1.43952 1.20188 0.87977 0.94526 1.07346 1.18946 1.05587 0.94996 0.92444 1.21244 0.92218 0.93760 0.97843 1.21300 1.03374 0.95195 0.96774 1.22504 0.96425 1.02804 0.93666 1.87094 1.74070 0.96836 1.12416 1.22250 1.00500 1.02827 0.91783 1.20301 1.48529 0.92185 0.95038 0.89457 1.24844 0.93865 0.94926 0.98478 1.69848 1.45234 1.13054 1.23848 0.86822 0.79186 0.80793 0.82857 1.19672 1.20538 1.19105 1.20313 1.17583 0.94064 0.82552 1.43463 0.98392 1.01037 1.02366 1.94466 1.56670 1.68629 1.20166 1.94541 1.47873 0.99666 1.93074 1.20602 0.92563 0.90920 0.99469 0.88014 0.91808 0.91766 0.86087 0.86200 0.84357 0.83288 0.93553 0.94004 0.91924 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.02 10.57 -39.26 -0.41 -3.43 16 3 C 0.46 4.45 7.95 36.00 0.29 4.73 16 4 O -0.49 -6.76 15.78 -18.76 -0.30 -7.06 16 5 C -0.06 -0.44 5.94 -29.04 -0.17 -0.61 16 6 C -0.11 -1.23 4.38 -104.58 -0.46 -1.69 16 7 C -0.03 -0.33 9.69 -39.62 -0.38 -0.72 16 8 C -0.14 -2.08 9.36 -39.36 -0.37 -2.45 16 9 C -0.04 -0.63 6.11 -39.04 -0.24 -0.86 16 10 S 0.04 0.81 18.67 -107.50 -2.01 -1.19 16 11 C -0.03 -0.58 3.16 36.01 0.11 -0.47 16 12 C -0.52 -14.11 9.68 -34.44 -0.33 -14.44 16 13 H 0.09 2.59 7.96 -52.48 -0.42 2.18 16 14 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 15 N -0.88 -25.74 13.96 55.43 0.77 -24.96 16 16 Si 0.88 19.76 27.47 -169.99 -4.67 15.09 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.27 -5.61 6.54 56.52 0.37 -5.24 16 20 C -0.05 -0.85 6.87 -79.74 -0.55 -1.39 16 21 N 0.04 0.68 4.45 34.06 0.15 0.83 16 22 O -0.19 -3.46 18.45 -29.46 -0.54 -4.01 16 23 O -0.14 -2.74 15.81 -29.46 -0.47 -3.20 16 24 C -0.02 -0.20 9.20 -39.61 -0.36 -0.56 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.12 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.12 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.15 2.19 5.88 -52.49 -0.31 1.89 16 32 H 0.05 1.01 6.81 -51.92 -0.35 0.66 16 33 H 0.04 0.88 7.17 -51.93 -0.37 0.51 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.15 1.63 7.61 -52.49 -0.40 1.23 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -32.78 326.65 -7.59 -40.37 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.55 Total: -2.41 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -1.50 Total: -14.95 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.93 Total: -24.13 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -1.72 Total: -17.70 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.01 Total: -1.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.78 -7.59 -40.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413474713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.524 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds