Wall clock time and date at job start Tue Mar 31 2020 09:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.50693 * 109.47486 * 179.72204 * 5 3 2 7 7 C 1.38323 * 119.92373 * 89.99585 * 6 5 3 8 8 C 1.38059 * 120.08530 * 179.97438 * 7 6 5 9 9 C 1.39000 * 119.91580 * 0.02842 * 8 7 6 10 10 S 1.76200 * 120.07779 * 180.02562 * 9 8 7 11 11 C 1.81394 * 103.00043 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47396 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99734 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00343 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00028 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99948 * 359.97438 * 14 12 11 17 17 H 1.48511 * 109.46841 * 90.00151 * 16 14 12 18 18 H 1.48497 * 109.47020 * 209.99904 * 16 14 12 19 19 H 1.48496 * 109.47113 * 330.00387 * 16 14 12 20 20 C 1.38946 * 119.84190 * 359.97438 * 9 8 7 21 21 N 1.48002 * 120.04326 * 179.97438 * 20 9 8 22 22 O 1.21797 * 120.00456 * 180.02562 * 21 20 9 23 23 O 1.21800 * 119.99844 * 0.02562 * 21 20 9 24 24 C 1.38115 * 119.92011 * 359.72737 * 20 9 8 25 25 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 29 29 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 30 30 H 1.08004 * 119.95781 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.04067 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47489 * 300.00168 * 11 10 9 33 33 H 1.08997 * 109.47387 * 60.00035 * 11 10 9 34 34 H 0.96996 * 119.99852 * 179.97438 * 15 14 12 35 35 H 1.07997 * 119.95921 * 180.27415 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 3.9935 2.7201 -0.0118 7 6 4.1938 3.3850 1.1845 8 6 4.5858 4.7088 1.1832 9 6 4.7785 5.3736 -0.0222 10 16 5.2793 7.0629 -0.0287 11 6 5.4023 7.4589 1.7372 12 6 5.8280 8.8952 1.9016 13 1 6.0071 9.5083 1.0307 14 6 5.9899 9.4262 3.1636 15 7 6.3619 10.6795 3.3070 16 14 5.6809 8.3655 4.6699 17 1 6.9415 7.6866 5.0642 18 1 5.2081 9.2201 5.7885 19 1 4.6477 7.3467 4.3543 20 6 4.5762 4.7026 -1.2219 21 7 4.7796 5.4063 -2.5079 22 8 4.6017 4.8175 -3.5592 23 8 5.1249 6.5743 -2.5151 24 6 4.1902 3.3765 -1.2129 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 3.9595 0.7833 0.8836 29 1 3.9525 0.7785 -0.8964 30 1 4.0434 2.8680 2.1207 31 1 4.7424 5.2272 2.1177 32 1 4.4319 7.3115 2.2112 33 1 6.1384 6.8056 2.2057 34 1 6.4754 11.0531 4.1949 35 1 4.0371 2.8530 -2.1451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413474713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:32 Heat of formation + Delta-G solvation = -82.499873 kcal Electronic energy + Delta-G solvation = -22566.626895 eV Core-core repulsion = 18851.841910 eV Total energy + Delta-G solvation = -3714.784985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.23698 -41.64617 -40.33129 -37.66959 -37.53275 -35.30883 -34.52436 -33.12082 -31.49558 -30.08866 -27.94538 -27.69243 -25.05280 -23.95897 -23.32339 -21.89605 -20.26245 -19.74649 -19.12080 -18.71832 -18.59195 -18.40083 -17.62969 -17.51681 -16.86716 -16.40254 -16.08239 -15.50120 -15.11648 -15.06677 -14.64135 -14.50652 -14.44844 -14.01057 -13.58257 -13.22014 -13.03484 -12.90174 -12.81332 -12.71520 -12.41038 -12.29257 -12.27504 -12.08668 -11.80033 -11.79030 -11.67936 -11.00820 -10.85827 -10.67750 -10.66862 -8.68274 -8.41627 -6.54409 -1.24800 -0.28373 0.23770 0.28521 0.52281 1.18109 1.31169 1.34457 1.43903 1.58792 1.68535 2.26306 2.27333 2.90919 3.20441 3.31481 3.74309 3.79778 3.82185 3.96847 4.24922 4.32996 4.34688 4.41445 4.45449 4.55690 4.59352 4.64094 4.74216 4.77979 5.00779 5.16363 5.24758 5.36834 5.46897 5.99103 6.50503 6.53459 6.72220 7.09187 8.74113 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.003982 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.142074 B = 7029.874443 C = 8604.945669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.460 3.540 4 O -0.542 6.542 5 C -0.059 4.059 6 C -0.092 4.092 7 C -0.012 4.012 8 C -0.149 4.149 9 C -0.050 4.050 10 S -0.029 6.029 11 C -0.011 4.011 12 C -0.537 4.537 13 H 0.036 0.964 14 C 0.021 3.979 15 N -0.938 5.938 16 Si 0.953 3.047 17 H -0.256 1.256 18 H -0.279 1.279 19 H -0.238 1.238 20 C -0.066 4.066 21 N 0.035 4.965 22 O -0.164 6.164 23 O -0.202 6.202 24 C -0.016 4.016 25 H 0.132 0.868 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.186 0.814 31 H 0.150 0.850 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.274 0.726 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -29.490 -1.823 30.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.432 6.432 5 C -0.096 4.096 6 C -0.097 4.097 7 C -0.032 4.032 8 C -0.174 4.174 9 C -0.167 4.167 10 S 0.224 5.776 11 C -0.158 4.158 12 C -0.575 4.575 13 H 0.054 0.946 14 C -0.179 4.179 15 N -0.576 5.576 16 Si 0.774 3.226 17 H -0.181 1.181 18 H -0.204 1.204 19 H -0.161 1.161 20 C -0.159 4.159 21 N 0.542 4.458 22 O -0.380 6.380 23 O -0.402 6.402 24 C -0.036 4.036 25 H 0.150 0.850 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.182 0.818 29 H 0.171 0.829 30 H 0.203 0.797 31 H 0.168 0.832 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.376 -28.336 -2.005 29.616 hybrid contribution -0.379 0.448 1.005 1.164 sum -8.755 -27.888 -1.000 29.247 Atomic orbital electron populations 1.23507 0.75138 1.05599 1.02226 1.86489 1.24575 1.32567 1.83748 1.24191 0.92863 0.81091 0.71441 1.90760 1.68229 1.37740 1.46463 1.20417 0.86111 0.91865 1.11177 1.19458 1.02210 0.96863 0.91159 1.21810 0.89114 0.92155 1.00167 1.21495 1.03585 0.96747 0.95552 1.22328 0.98797 1.00296 0.95302 1.87312 1.77397 1.01596 1.11288 1.21944 1.00823 0.99818 0.93228 1.20517 1.48712 0.94496 0.93824 0.94561 1.25950 0.93174 0.96388 1.02425 1.70020 1.46998 1.15567 1.24999 0.85627 0.80363 0.79229 0.77375 1.18066 1.20434 1.16078 1.20612 1.18985 0.95257 0.81032 1.43839 0.97789 1.00921 1.03209 1.94403 1.54450 1.68085 1.21080 1.94568 1.51338 1.00891 1.93421 1.21054 0.91567 0.89259 1.01729 0.84970 0.92262 0.92504 0.81793 0.82852 0.79687 0.83223 0.92720 0.92384 0.91658 0.81014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -4.35 10.57 -51.41 -0.54 -4.90 16 3 C 0.46 6.73 7.95 71.23 0.57 7.30 16 4 O -0.54 -13.07 15.78 21.94 0.35 -12.72 16 5 C -0.06 -0.43 5.94 29.10 0.17 -0.25 16 6 C -0.09 -1.49 4.38 -19.84 -0.09 -1.58 16 7 C -0.01 -0.21 9.69 22.25 0.22 0.01 16 8 C -0.15 -3.98 9.36 22.41 0.21 -3.77 16 9 C -0.05 -1.72 6.11 22.62 0.14 -1.59 16 10 S -0.03 -1.26 18.67 -56.49 -1.05 -2.31 16 11 C -0.01 -0.48 3.16 71.24 0.23 -0.26 16 12 C -0.54 -30.72 9.68 25.60 0.25 -30.47 16 13 H 0.04 2.37 7.96 -2.91 -0.02 2.34 16 14 C 0.02 1.20 5.47 84.65 0.46 1.66 16 15 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 16 Si 0.95 40.44 27.47 68.60 1.88 42.32 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 20 C -0.07 -2.12 6.87 36.52 0.25 -1.87 16 21 N 0.04 1.33 4.45 -46.14 -0.21 1.13 16 22 O -0.16 -5.72 18.45 18.89 0.35 -5.37 16 23 O -0.20 -8.74 15.81 18.89 0.30 -8.44 16 24 C -0.02 -0.36 9.20 22.25 0.20 -0.15 16 25 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 27 H 0.06 0.64 8.13 -2.38 -0.02 0.62 16 28 H 0.16 -0.04 8.08 -2.38 -0.02 -0.05 16 29 H 0.15 0.27 8.08 -2.39 -0.02 0.25 16 30 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.15 3.98 5.88 -2.91 -0.02 3.97 16 32 H 0.05 2.36 6.81 -2.39 -0.02 2.34 16 33 H 0.06 2.42 7.17 -2.39 -0.02 2.40 16 34 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.17 3.02 7.61 -2.91 -0.02 3.00 16 Total: -1.00 -79.70 326.65 6.26 -73.45 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.08 Total: 3.30 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.80 Total: -29.49 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.09 Total: -55.84 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: 0.45 Total: -31.42 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.88 Total: 42.32 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -1.05 Total: -2.31 kcal Total: -79.70 6.26 -73.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413474713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.051 kcal (2) G-P(sol) polarization free energy of solvation -79.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds