Wall clock time and date at job start Tue Mar 31 2020 09:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47127 * 2 1 4 4 N 1.29763 * 126.33903 * 269.97453 * 3 2 1 5 5 O 1.41325 * 109.74627 * 180.02562 * 4 3 2 6 6 C 1.34791 * 109.45169 * 359.97438 * 5 4 3 7 7 N 1.32499 * 133.14807 * 179.97438 * 6 5 4 8 8 C 1.31648 * 121.68942 * 179.70534 * 7 6 5 9 9 C 1.38640 * 121.51030 * 0.61150 * 8 7 6 10 10 S 1.76200 * 120.29921 * 179.70858 * 9 8 7 11 11 O 1.42099 * 106.39883 * 156.18581 * 10 9 8 12 12 O 1.42097 * 106.40257 * 23.27220 * 10 9 8 13 13 N 1.65600 * 107.21938 * 269.72494 * 10 9 8 14 14 C 1.46496 * 119.99728 * 65.00313 * 13 10 9 15 15 C 1.50706 * 109.47106 * 164.99627 * 14 13 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00200 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00139 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47145 * 89.99836 * 19 17 15 21 21 H 1.48496 * 109.47547 * 210.00333 * 19 17 15 22 22 H 1.48499 * 109.47030 * 330.00237 * 19 17 15 23 23 C 1.38186 * 119.39769 * 359.44268 * 9 8 7 24 24 C 1.39809 * 118.05968 * 0.24465 * 23 9 8 25 25 H 1.09005 * 109.47294 * 300.00176 * 1 2 3 26 26 H 1.09001 * 109.46791 * 60.00429 * 1 2 3 27 27 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47209 * 239.99726 * 2 1 3 29 29 H 1.09001 * 109.46791 * 119.99570 * 2 1 3 30 30 H 1.07998 * 119.24632 * 180.32612 * 8 7 6 31 31 H 0.96998 * 120.00167 * 245.00083 * 13 10 9 32 32 H 1.09001 * 109.47001 * 44.99918 * 14 13 10 33 33 H 1.09000 * 109.47574 * 285.00134 * 14 13 10 34 34 H 0.96999 * 120.00061 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.97153 * 180.22854 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1456 -1.0453 5 8 2.7410 3.4224 -0.6417 6 6 2.7626 3.4861 0.7045 7 7 3.0999 4.4388 1.5613 8 6 3.0279 4.2555 2.8630 9 6 2.6067 3.0500 3.4028 10 16 2.5297 2.8369 5.1501 11 8 1.5854 1.8017 5.3869 12 8 2.4123 4.1384 5.7083 13 7 3.9993 2.2497 5.6376 14 6 5.2018 3.0739 5.4934 15 6 6.3147 2.4886 6.3241 16 1 6.1434 1.5921 6.9014 17 6 7.5514 3.0977 6.3472 18 7 8.5227 2.5866 7.0717 19 14 7.8478 4.6479 5.3481 20 1 7.5220 5.8386 6.1735 21 1 9.2733 4.7063 4.9360 22 1 6.9838 4.6314 4.1405 23 6 2.2425 2.0189 2.5579 24 6 2.3212 2.2391 1.1795 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.3077 5.0611 3.5256 31 1 4.0640 1.3601 6.0187 32 1 4.9900 4.0880 5.8325 33 1 5.5034 3.0966 4.4462 34 1 9.3928 3.0149 7.0876 35 1 1.9072 1.0705 2.9509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487354517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:10 Heat of formation + Delta-G solvation = 2.646478 kcal Electronic energy + Delta-G solvation = -23303.564426 eV Core-core repulsion = 19624.764415 eV Total energy + Delta-G solvation = -3678.800011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.41323 -39.13520 -37.10445 -35.98212 -35.70766 -34.95019 -32.98750 -32.32227 -31.65504 -30.92015 -27.53062 -25.16699 -24.47208 -24.24744 -22.18702 -20.71548 -19.80808 -18.57803 -18.17673 -17.60644 -17.20048 -16.75445 -16.26526 -15.81557 -15.69519 -14.86641 -14.63156 -14.48656 -13.92147 -13.68919 -13.67347 -13.60497 -13.34284 -13.05725 -12.60771 -12.40028 -12.22331 -12.17811 -11.96951 -11.85489 -11.73815 -11.59815 -11.32508 -10.97966 -10.74231 -10.10903 -10.05787 -9.97571 -9.68129 -9.62841 -9.05041 -8.65759 -6.27960 -4.30803 0.04189 0.21921 0.59493 1.53241 1.67900 2.93379 3.18679 3.21333 3.24593 3.26815 3.36488 3.48721 3.86840 4.01657 4.22744 4.23832 4.37514 4.43913 4.60466 4.64085 4.67271 4.98373 5.05410 5.14866 5.31905 5.32797 5.35372 5.43501 5.68145 5.79089 5.97491 6.62259 6.66746 6.75330 7.17537 7.24958 7.63734 8.25995 8.72720 9.29254 10.84116 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.004552 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.432234 B = 6149.494961 C = 6809.404161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.060 4.060 3 C 0.158 3.842 4 N -0.275 5.275 5 O -0.080 6.080 6 C 0.331 3.669 7 N -0.487 5.487 8 C 0.271 3.729 9 C -0.762 4.762 10 S 2.700 3.300 11 O -0.966 6.966 12 O -0.951 6.951 13 N -1.090 6.090 14 C 0.214 3.786 15 C -0.534 4.534 16 H 0.084 0.916 17 C 0.077 3.923 18 N -0.889 5.889 19 Si 0.870 3.130 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.119 3.881 24 C -0.271 4.271 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.195 0.805 31 H 0.419 0.581 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.269 0.731 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 -4.347 -11.909 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 C -0.024 4.024 4 N -0.021 5.021 5 O -0.082 6.082 6 C 0.148 3.852 7 N -0.207 5.207 8 C 0.107 3.893 9 C -0.847 4.847 10 S 2.784 3.216 11 O -0.956 6.956 12 O -0.941 6.941 13 N -0.854 5.854 14 C 0.089 3.911 15 C -0.573 4.573 16 H 0.102 0.898 17 C -0.127 4.127 18 N -0.526 5.526 19 Si 0.696 3.304 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.188 1.188 23 C 0.091 3.909 24 C -0.277 4.277 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.212 0.788 31 H 0.255 0.745 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.661 -2.987 -13.282 20.007 hybrid contribution 0.596 -0.275 -0.053 0.658 sum -14.065 -3.262 -13.335 19.654 Atomic orbital electron populations 1.21771 0.92489 1.03470 1.03120 1.20381 0.97453 0.86289 1.05697 1.24599 0.91285 0.97473 0.89013 1.80079 1.16743 0.88085 1.17221 1.89273 1.73914 1.29827 1.15201 1.20752 0.88188 0.89795 0.86416 1.66909 1.20265 1.30942 1.02569 1.22858 0.83079 0.94292 0.89057 1.32361 1.19606 1.02667 1.30081 1.01863 0.73039 0.74007 0.72703 1.93556 1.60138 1.57676 1.84265 1.93595 1.85868 1.40141 1.74466 1.55247 1.24271 1.29444 1.76422 1.19534 0.83262 0.91084 0.97173 1.20984 0.93929 1.13525 1.28886 0.89807 1.24844 0.95698 0.97255 0.94930 1.69863 1.03194 1.40151 1.39405 0.86947 0.78272 0.83991 0.81217 1.19332 1.20721 1.18764 1.20883 0.82891 0.97453 0.89671 1.21411 1.14455 0.95971 0.95900 0.91701 0.91914 0.90449 0.88365 0.87965 0.78830 0.74547 0.94684 0.96378 0.92146 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.06 -0.39 6.54 -27.88 -0.18 -0.57 16 3 C 0.16 1.72 6.72 -80.17 -0.54 1.18 16 4 N -0.28 -3.62 12.81 34.88 0.45 -3.17 16 5 O -0.08 -1.23 12.05 7.78 0.09 -1.14 16 6 C 0.33 5.04 8.64 -16.39 -0.14 4.90 16 7 N -0.49 -7.65 10.38 -12.98 -0.13 -7.78 16 8 C 0.27 3.92 10.66 -17.48 -0.19 3.73 16 9 C -0.76 -10.47 5.96 -39.45 -0.24 -10.70 16 10 S 2.70 40.98 5.75 -107.50 -0.62 40.37 16 11 O -0.97 -15.16 17.35 -57.18 -0.99 -16.15 16 12 O -0.95 -16.77 16.75 -57.18 -0.96 -17.72 16 13 N -1.09 -18.62 5.99 -11.66 -0.07 -18.69 16 14 C 0.21 4.50 5.04 -5.19 -0.03 4.47 16 15 C -0.53 -13.69 9.83 -34.44 -0.34 -14.03 16 16 H 0.08 2.27 7.90 -52.49 -0.41 1.86 16 17 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.89 -25.44 13.96 55.43 0.77 -24.66 16 19 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 23 C 0.12 1.43 9.69 -39.01 -0.38 1.05 16 24 C -0.27 -3.46 6.34 -105.14 -0.67 -4.13 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.20 2.44 7.60 -52.49 -0.40 2.04 16 31 H 0.42 6.58 8.54 -34.47 -0.29 6.28 16 32 H 0.04 0.74 7.18 -51.93 -0.37 0.37 16 33 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.17 1.44 7.70 -52.49 -0.40 1.04 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -32.79 323.18 -7.22 -40.01 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.54 Total: 1.48 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.42 Total: -12.60 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 1.02 Total: -54.31 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.86 Total: -35.02 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Atomic # 16 Polarization: 40.98 SS G_CDS: -0.62 Total: 40.37 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.79 -7.22 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487354517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.653 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds