Wall clock time and date at job start Tue Mar 31 2020 09:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46980 * 139.19885 * 3 2 1 5 5 C 1.37100 * 119.99962 * 263.92607 * 4 3 2 6 6 H 1.07998 * 119.99882 * 199.75792 * 5 4 3 7 7 C 1.38950 * 119.99881 * 19.75511 * 5 4 3 8 8 N 1.31412 * 120.00164 * 21.75098 * 7 5 4 9 9 Si 1.86798 * 119.99812 * 201.74746 * 7 5 4 10 10 H 1.48497 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47099 * 120.00324 * 9 7 5 12 12 H 1.48501 * 109.46999 * 239.99941 * 9 7 5 13 13 C 1.34774 * 120.00071 * 83.92541 * 4 3 2 14 14 O 1.21286 * 120.00219 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99883 * 359.97438 * 13 4 3 16 16 S 1.81400 * 109.47197 * 180.02562 * 15 13 4 17 17 C 1.76194 * 103.00196 * 180.02562 * 16 15 13 18 18 C 1.38955 * 120.04437 * 0.02562 * 17 16 15 19 19 C 1.38123 * 119.98895 * 179.97438 * 18 17 16 20 20 C 1.38428 * 120.07672 * 359.97438 * 19 18 17 21 21 F 1.35100 * 119.95020 * 180.27602 * 20 19 18 22 22 C 1.38671 * 120.09441 * 0.02562 * 20 19 18 23 23 F 1.35098 * 119.99956 * 180.02562 * 22 20 19 24 24 C 1.38303 * 120.00827 * 359.97438 * 22 20 19 25 25 H 4.40648 * 5.51493 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47050 * 19.19512 * 3 2 1 27 27 H 1.08996 * 109.46889 * 259.19843 * 3 2 1 28 28 H 0.96998 * 120.00386 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46803 * 60.00456 * 15 13 4 30 30 H 1.08998 * 109.47438 * 300.00014 * 15 13 4 31 31 H 1.08001 * 120.00798 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.96033 * 180.02562 * 19 18 17 33 33 H 1.08005 * 120.04265 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0464 -0.9025 5 6 3.4809 0.7326 -2.1912 6 1 4.1238 1.3936 -2.7535 7 6 3.0055 -0.4358 -2.7739 8 7 1.9247 -1.0138 -2.2998 9 14 3.9026 -1.1848 -4.2311 10 1 5.0820 -0.3484 -4.5694 11 1 4.3526 -2.5566 -3.8834 12 1 2.9866 -1.2454 -5.3984 13 6 3.2414 2.3170 -0.4660 14 8 3.6448 3.1829 -1.2134 15 6 2.8594 2.6620 0.9503 16 16 3.1133 4.4362 1.2300 17 6 2.6229 4.6470 2.9092 18 6 2.1796 3.5559 3.6467 19 6 1.7960 3.7224 4.9631 20 6 1.8529 4.9751 5.5492 21 9 1.4823 5.1340 6.8386 22 6 2.2948 6.0663 4.8163 23 9 2.3501 7.2879 5.3904 24 6 2.6798 5.9038 3.4979 25 1 -1.0503 -0.0001 0.0003 26 1 3.0097 -0.9697 -0.3379 27 1 3.0092 0.1934 1.0094 28 1 1.5930 -1.8297 -2.7063 29 1 3.4791 2.0923 1.6428 30 1 1.8104 2.4153 1.1141 31 1 2.1351 2.5779 3.1907 32 1 1.4519 2.8740 5.5360 33 1 3.0237 6.7534 2.9264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491012995.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:56 Heat of formation + Delta-G solvation = -39.109900 kcal Electronic energy + Delta-G solvation = -21977.955441 eV Core-core repulsion = 18153.964470 eV Total energy + Delta-G solvation = -3823.990970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.54076 -49.61505 -40.52103 -39.78932 -37.13557 -34.14168 -33.05967 -32.19776 -31.86451 -30.63840 -28.16928 -26.36813 -24.48007 -23.96348 -21.32180 -19.73756 -19.50427 -18.59429 -18.45839 -18.15650 -18.07071 -17.38240 -17.14532 -16.52946 -16.39400 -16.03758 -15.87902 -15.60595 -15.11142 -15.03834 -14.81585 -14.41856 -14.28142 -13.97514 -13.84874 -13.55847 -13.31769 -13.15470 -12.78623 -12.52570 -12.45797 -12.12870 -11.26743 -11.19781 -11.06554 -10.72556 -10.66490 -10.45246 -10.10331 -9.85932 -8.50060 -8.34646 -5.96615 -0.29387 -0.09308 0.21155 1.31047 1.34412 1.45289 1.57357 1.81322 2.11964 2.18623 2.32734 2.38475 2.74711 3.01502 3.06059 3.24678 3.50809 3.81229 3.85207 3.92311 3.98178 4.02368 4.25048 4.38831 4.66392 4.67312 4.78420 4.86795 4.94209 4.97195 5.43058 5.47171 5.60227 6.00393 6.38085 7.09533 7.15580 7.34292 7.88089 8.63389 Molecular weight = 311.05amu Principal moments of inertia in cm(-1) A = 0.028131 B = 0.003155 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.098737 B = 8872.916887 C = 9615.286951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.157 4.157 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.353 4.353 6 H 0.076 0.924 7 C 0.010 3.990 8 N -0.865 5.865 9 Si 0.980 3.020 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.283 1.283 13 C 0.453 3.547 14 O -0.613 6.613 15 C -0.122 4.122 16 S -0.048 6.048 17 C -0.082 4.082 18 C -0.116 4.116 19 C -0.088 4.088 20 C 0.045 3.955 21 F -0.135 7.135 22 C 0.078 3.922 23 F -0.134 7.134 24 C -0.114 4.114 25 H 0.230 0.770 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.273 0.727 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.180 0.820 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 3.034 15.154 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.159 4.159 3 C 0.108 3.892 4 N -0.158 5.158 5 C -0.481 4.481 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.501 5.501 9 Si 0.805 3.195 10 H -0.199 1.199 11 H -0.189 1.189 12 H -0.209 1.209 13 C 0.241 3.759 14 O -0.499 6.499 15 C -0.273 4.273 16 S 0.198 5.802 17 C -0.196 4.196 18 C -0.140 4.140 19 C -0.108 4.108 20 C 0.021 3.979 21 F -0.114 7.114 22 C 0.056 3.944 23 F -0.113 7.113 24 C -0.139 4.139 25 H 0.247 0.753 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.176 0.824 32 H 0.197 0.803 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.235 4.047 13.867 14.498 hybrid contribution -0.510 -0.967 0.140 1.102 sum -1.745 3.080 14.007 14.447 Atomic orbital electron populations 1.25134 0.96349 1.01048 1.03205 1.23347 0.94878 0.99773 0.97894 1.18393 0.84649 0.93179 0.92965 1.43780 1.55410 1.05396 1.11200 1.19576 1.29725 1.07735 0.91022 0.90621 1.25922 0.95172 0.97430 1.00990 1.70160 1.17851 1.19565 1.42565 0.85079 0.78307 0.78419 0.77726 1.19925 1.18896 1.20855 1.19881 0.84324 0.82601 0.89086 1.90549 1.52620 1.47766 1.58996 1.23754 1.07544 0.97158 0.98861 1.86533 1.80195 1.09136 1.04364 1.22046 1.02238 0.96316 0.98998 1.21442 0.99627 0.98968 0.94006 1.21253 0.98696 0.95670 0.95170 1.17794 1.05656 0.94499 0.79909 1.91509 1.89433 1.96334 1.34138 1.17558 1.04601 0.79948 0.92273 1.91512 1.94355 1.40862 1.84538 1.20609 1.02756 0.97935 0.92629 0.75323 0.88962 0.87513 0.91691 0.84395 0.86033 0.82392 0.80301 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.43 19.25 74.32 1.43 -7.00 16 2 C -0.16 -6.10 10.75 31.13 0.33 -5.76 16 3 C 0.23 8.84 4.91 84.58 0.42 9.25 16 4 N -0.44 -20.54 2.60 -645.42 -1.68 -22.22 16 5 C -0.35 -18.72 9.28 84.04 0.78 -17.94 16 6 H 0.08 4.38 7.42 -2.91 -0.02 4.36 16 7 C 0.01 0.47 4.83 84.93 0.41 0.88 16 8 N -0.87 -42.28 9.59 21.66 0.21 -42.07 16 9 Si 0.98 39.94 29.60 68.60 2.03 41.97 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 12 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 13 C 0.45 20.33 7.58 87.66 0.66 20.99 16 14 O -0.61 -32.87 15.53 -3.05 -0.05 -32.92 16 15 C -0.12 -3.81 3.42 71.24 0.24 -3.57 16 16 S -0.05 -1.49 21.06 -56.49 -1.19 -2.68 16 17 C -0.08 -1.93 6.11 22.60 0.14 -1.80 16 18 C -0.12 -2.20 9.36 22.41 0.21 -1.99 16 19 C -0.09 -1.46 10.02 22.29 0.22 -1.24 16 20 C 0.04 0.93 7.30 22.42 0.16 1.09 16 21 F -0.14 -3.00 17.18 44.97 0.77 -2.23 16 22 C 0.08 1.77 7.30 22.39 0.16 1.94 16 23 F -0.13 -3.25 17.18 44.97 0.77 -2.48 16 24 C -0.11 -2.58 9.77 22.45 0.22 -2.36 16 25 H 0.23 6.26 7.80 -4.40 -0.03 6.22 16 26 H 0.09 3.83 6.60 -2.39 -0.02 3.82 16 27 H 0.11 3.02 6.70 -2.39 -0.02 3.00 16 28 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 29 H 0.14 3.30 7.02 -2.39 -0.02 3.28 16 30 H 0.12 3.46 7.10 -2.39 -0.02 3.44 16 31 H 0.16 2.47 5.87 -2.91 -0.02 2.45 16 32 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -64.97 316.88 7.43 -57.54 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.17 Total: 12.58 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.40 Total: -7.50 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -1.47 Total: -64.29 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.05 Total: -32.92 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 1.54 Total: -4.71 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.19 Total: -2.68 kcal Total: -64.97 7.43 -57.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012995.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.427 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds