Wall clock time and date at job start Tue Mar 31 2020 09:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48505 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47006 * 299.99996 * 3 2 1 6 6 H 1.48497 * 109.46972 * 60.00014 * 3 2 1 7 7 C 1.39955 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99953 * 174.31401 * 7 2 1 9 9 C 1.41064 * 120.00081 * 354.31784 * 7 2 1 10 10 C 1.40743 * 120.29176 * 334.32144 * 9 7 2 11 11 C 1.37547 * 119.80879 * 180.02562 * 10 9 7 12 12 Cl 1.73603 * 119.78924 * 179.97438 * 11 10 9 13 13 C 1.39005 * 120.42363 * 0.02562 * 11 10 9 14 14 C 1.38188 * 120.60016 * 359.69709 * 13 11 10 15 15 C 1.38614 * 120.17341 * 0.55601 * 14 13 11 16 16 N 1.39151 * 120.21206 * 179.74705 * 15 14 13 17 17 C 1.34777 * 119.99676 * 335.20912 * 16 15 14 18 18 O 1.21277 * 120.00517 * 354.16095 * 17 16 15 19 19 C 1.50704 * 119.99658 * 174.15420 * 17 16 15 20 20 H 1.09002 * 109.52339 * 304.87293 * 19 17 16 21 21 C 1.53146 * 109.52185 * 65.00149 * 19 17 16 22 22 O 1.43080 * 109.14773 * 175.27584 * 21 19 17 23 23 C 1.43074 * 113.59565 * 302.04953 * 22 21 19 24 24 C 1.53138 * 109.14857 * 57.95443 * 23 22 21 25 25 O 1.43075 * 109.20628 * 304.65240 * 24 23 22 26 26 H 0.96994 * 119.99837 * 0.02562 * 1 2 3 27 27 H 1.07990 * 120.09481 * 0.04336 * 10 9 7 28 28 H 1.08000 * 119.70075 * 179.97438 * 13 11 10 29 29 H 1.08001 * 119.91493 * 180.30555 * 14 13 11 30 30 H 0.96992 * 119.99862 * 155.21106 * 16 15 14 31 31 H 1.09004 * 109.52319 * 55.37996 * 21 19 17 32 32 H 1.08998 * 109.52737 * 295.18403 * 21 19 17 33 33 H 1.08990 * 109.52361 * 298.05215 * 23 22 21 34 34 H 1.09000 * 109.57538 * 177.88715 * 23 22 21 35 35 H 1.08995 * 109.52825 * 64.58830 * 24 23 22 36 36 H 1.09005 * 109.52682 * 184.71903 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0083 -1.2121 0.0005 8 1 3.0844 -1.2144 -0.0921 9 6 1.3082 -2.4306 0.1220 10 6 0.0548 -2.4686 0.7612 11 6 -0.6190 -3.6623 0.8746 12 17 -2.1646 -3.7087 1.6636 13 6 -0.0698 -4.8321 0.3624 14 6 1.1570 -4.8136 -0.2734 15 6 1.8599 -3.6253 -0.3969 16 7 3.0977 -3.6067 -1.0323 17 6 3.8452 -4.7270 -1.0845 18 8 3.4899 -5.7215 -0.4883 19 6 5.1227 -4.7438 -1.8839 20 1 4.9140 -4.4423 -2.9104 21 6 6.1296 -3.7732 -1.2600 22 8 7.3748 -3.8764 -1.9571 23 6 7.9279 -5.1959 -1.9493 24 6 6.9210 -6.1664 -2.5732 25 8 5.6755 -6.0648 -1.8764 26 1 -0.4849 0.8400 -0.0004 27 1 -0.3767 -1.5631 1.1611 28 1 -0.6088 -5.7630 0.4583 29 1 1.5711 -5.7282 -0.6716 30 1 3.4225 -2.7876 -1.4376 31 1 6.2778 -4.0269 -0.2103 32 1 5.7509 -2.7543 -1.3395 33 1 8.1365 -5.4973 -0.9229 34 1 8.8519 -5.2080 -2.5275 35 1 6.7728 -5.9127 -3.6229 36 1 7.3002 -7.1853 -2.4947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568215520.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:43 Heat of formation + Delta-G solvation = -106.942517 kcal Electronic energy + Delta-G solvation = -23394.152607 eV Core-core repulsion = 19676.264003 eV Total energy + Delta-G solvation = -3717.888604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50661 -39.19520 -37.37284 -36.09774 -35.44856 -33.95304 -33.71328 -31.86197 -29.83633 -28.90829 -27.65843 -25.56900 -24.99653 -22.47253 -21.59577 -20.90320 -19.64880 -17.81207 -17.41422 -17.11753 -16.52910 -16.25267 -15.89004 -15.47625 -15.35069 -14.73322 -14.60664 -14.23515 -13.58020 -13.38028 -13.20489 -12.93932 -12.52508 -12.46941 -12.19244 -11.75407 -11.69069 -11.52628 -11.26540 -10.97177 -10.94540 -10.73445 -10.59686 -10.41533 -10.26217 -9.71269 -9.50337 -9.41493 -9.28123 -8.87580 -7.62059 -7.07769 -6.77174 -4.61914 2.28312 2.66991 2.96235 2.99352 3.02513 3.04377 3.14297 3.34164 3.50490 3.75886 4.07655 4.37668 4.44223 4.75117 4.81835 4.85641 4.94262 5.11856 5.27744 5.38810 5.41310 5.54178 5.61392 6.22828 6.34958 6.62705 6.72261 6.74255 6.80578 6.95216 6.98351 7.26048 7.46373 7.66724 7.80752 7.83885 8.16863 8.28924 8.56620 8.62629 8.76558 9.99596 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.004714 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.959106 B = 5937.970202 C = 8036.011582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.143 4.143 11 C -0.016 4.016 12 Cl -0.124 7.124 13 C -0.213 4.213 14 C -0.088 4.088 15 C 0.023 3.977 16 N -0.632 5.632 17 C 0.505 3.495 18 O -0.511 6.511 19 C 0.040 3.960 20 H 0.093 0.907 21 C 0.036 3.964 22 O -0.374 6.374 23 C 0.020 3.980 24 C 0.023 3.977 25 O -0.349 6.349 26 H 0.283 0.717 27 H 0.150 0.850 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.406 0.594 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 -3.025 -4.703 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.098 3.902 10 C -0.163 4.163 11 C -0.043 4.043 12 Cl -0.095 7.095 13 C -0.233 4.233 14 C -0.108 4.108 15 C -0.071 4.071 16 N -0.276 5.276 17 C 0.290 3.710 18 O -0.387 6.387 19 C -0.022 4.022 20 H 0.111 0.889 21 C -0.042 4.042 22 O -0.293 6.293 23 C -0.056 4.056 24 C -0.054 4.054 25 O -0.267 6.267 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.242 0.758 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.878 -3.585 -4.249 11.335 hybrid contribution 0.347 1.118 -0.220 1.191 sum 10.224 -2.467 -4.469 11.428 Atomic orbital electron populations 1.69733 1.07404 1.29324 1.35108 1.25927 0.94946 1.01471 0.92225 0.86135 0.80553 0.80574 0.78803 1.18384 1.19771 1.19623 1.19362 0.94823 0.89887 1.44598 0.90262 1.17256 0.92331 0.90938 0.89652 1.21460 0.96317 0.96115 1.02448 1.20820 0.86418 0.95959 1.01120 1.98254 1.31863 1.98973 1.80445 1.20194 0.97911 0.95873 1.09336 1.20687 0.93369 0.97044 0.99681 1.17778 0.87354 0.95767 1.06173 1.42814 1.17853 1.12113 1.54802 1.19809 0.84464 0.84350 0.82392 1.90665 1.70865 1.33749 1.43395 1.22601 0.93250 0.85700 1.00607 0.88892 1.23206 0.83945 1.00520 0.96491 1.88110 1.36379 1.28555 1.76240 1.23295 0.97001 0.83514 1.01838 1.23316 0.84775 1.01184 0.96160 1.88269 1.36189 1.26165 1.76085 0.90516 0.83289 0.87921 0.85723 0.75812 0.91149 0.86731 0.91868 0.87631 0.91969 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.68 10.40 55.55 0.58 -18.10 16 2 C 0.07 1.62 5.36 -17.32 -0.09 1.53 16 3 Si 0.92 16.87 29.56 -169.99 -5.03 11.84 16 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 6 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 7 C -0.46 -10.54 8.42 -37.87 -0.32 -10.86 16 8 H 0.08 1.68 7.07 -52.48 -0.37 1.31 16 9 C 0.10 2.49 5.62 -106.66 -0.60 1.89 16 10 C -0.14 -3.53 8.47 -38.89 -0.33 -3.86 16 11 C -0.02 -0.38 6.31 -39.55 -0.25 -0.63 16 12 Cl -0.12 -2.54 28.94 -51.86 -1.50 -4.04 16 13 C -0.21 -4.84 9.82 -39.32 -0.39 -5.23 16 14 C -0.09 -2.02 8.70 -39.46 -0.34 -2.36 16 15 C 0.02 0.53 6.46 -83.18 -0.54 -0.01 16 16 N -0.63 -11.90 5.06 -9.48 -0.05 -11.95 16 17 C 0.50 9.27 6.98 -10.98 -0.08 9.20 16 18 O -0.51 -11.36 13.68 -14.23 -0.19 -11.56 16 19 C 0.04 0.57 3.26 -27.81 -0.09 0.48 16 20 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 21 C 0.04 0.45 6.27 37.23 0.23 0.68 16 22 O -0.37 -4.52 10.85 -48.72 -0.53 -5.05 16 23 C 0.02 0.19 7.05 37.23 0.26 0.46 16 24 C 0.02 0.23 7.04 37.23 0.26 0.49 16 25 O -0.35 -5.21 10.05 -62.47 -0.63 -5.84 16 26 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 27 H 0.15 3.83 5.77 -52.49 -0.30 3.53 16 28 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.13 2.87 5.78 -52.49 -0.30 2.57 16 30 H 0.41 6.63 7.23 -40.82 -0.30 6.33 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 1.27 7.88 -51.93 -0.41 0.86 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -28.67 318.54 -8.59 -37.26 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -3.78 Total: 10.86 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.27 Total: -8.22 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: 0.53 Total: -30.05 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.35 Total: -22.45 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -1.50 Total: -4.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.67 -8.59 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568215520.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.681 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds