Wall clock time and date at job start Tue Mar 31 2020 10:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 H 1.09001 * 109.47192 * 179.01524 * 3 2 1 5 5 C 1.50691 * 109.47390 * 59.00660 * 3 2 1 6 6 H 1.07997 * 120.00771 * 240.00274 * 5 3 2 7 7 C 1.37886 * 119.99674 * 60.00362 * 5 3 2 8 8 N 1.31508 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99992 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47215 * 59.99503 * 9 7 5 11 11 H 1.48501 * 109.47163 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46866 * 299.99674 * 9 7 5 13 13 N 1.46903 * 109.46937 * 299.01033 * 3 2 1 14 14 C 1.46900 * 111.00113 * 274.24177 * 13 3 2 15 15 C 1.50699 * 109.47327 * 181.52093 * 14 13 3 16 16 C 1.38246 * 119.99284 * 259.99967 * 15 14 13 17 17 C 1.38303 * 119.98842 * 179.97438 * 16 15 14 18 18 Br 1.89098 * 120.00506 * 179.97438 * 17 16 15 19 19 C 1.38343 * 119.97991 * 359.97438 * 17 16 15 20 20 C 1.38191 * 119.99185 * 0.02562 * 19 17 16 21 21 C 1.38218 * 119.99823 * 79.72000 * 15 14 13 22 22 C 1.50705 * 119.98942 * 0.02562 * 21 15 14 23 23 H 1.09001 * 109.47569 * 54.42721 * 1 2 3 24 24 H 1.09009 * 109.47385 * 174.42930 * 1 2 3 25 25 H 1.08998 * 109.47182 * 294.42287 * 1 2 3 26 26 H 1.09005 * 109.46925 * 239.99972 * 2 1 3 27 27 H 1.09001 * 109.47465 * 120.00041 * 2 1 3 28 28 H 0.97005 * 120.00088 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00069 * 150.29083 * 13 3 2 30 30 H 1.09005 * 109.46901 * 301.51780 * 14 13 3 31 31 H 1.09001 * 109.47577 * 61.51224 * 14 13 3 32 32 H 1.07996 * 120.00102 * 359.94860 * 16 15 14 33 33 H 1.08008 * 120.00218 * 180.02562 * 19 17 16 34 34 H 1.08004 * 119.99654 * 180.02562 * 20 19 17 35 35 H 1.08994 * 109.46982 * 90.00221 * 22 21 15 36 36 H 1.09000 * 109.46791 * 209.99658 * 22 21 15 37 37 H 1.08999 * 109.46983 * 330.00134 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 0.0177 5 6 1.5176 2.1600 1.2179 6 1 0.8985 3.0374 1.1037 7 6 1.8303 1.6962 2.4782 8 7 2.5839 0.6274 2.6172 9 14 1.1824 2.5851 3.9879 10 1 -0.3024 2.5845 3.9635 11 1 1.6571 1.8919 5.2123 12 1 1.6768 3.9854 3.9880 13 7 1.5699 2.1280 -1.2113 14 6 2.4817 1.8903 -2.3382 15 6 1.9882 2.6378 -3.5501 16 6 1.2842 1.9698 -4.5347 17 6 0.8308 2.6560 -5.6466 18 35 -0.1316 1.7427 -6.9940 19 6 1.0815 4.0106 -5.7728 20 6 1.7853 4.6775 -4.7881 21 6 2.2343 3.9922 -3.6743 22 6 2.9969 4.7210 -2.5980 23 1 -0.3634 0.5978 -0.8359 24 1 -0.3634 -1.0229 -0.0998 25 1 -0.3633 0.4249 0.9357 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.8042 0.3013 3.5039 29 1 1.4510 3.1160 -1.0445 30 1 3.4806 2.2403 -2.0774 31 1 2.5167 0.8234 -2.5586 32 1 1.0887 0.9123 -4.4357 33 1 0.7273 4.5470 -6.6408 34 1 1.9808 5.7352 -4.8863 35 1 4.0626 4.6919 -2.8246 36 1 2.6629 5.7577 -2.5548 37 1 2.8166 4.2407 -1.6363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578024280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:48 Heat of formation + Delta-G solvation = 12.233793 kcal Electronic energy + Delta-G solvation = -18003.705011 eV Core-core repulsion = 15212.389688 eV Total energy + Delta-G solvation = -2791.315323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61430 -36.33250 -33.76529 -32.66680 -31.34675 -30.40735 -29.89518 -26.91842 -26.09688 -24.27687 -23.08554 -22.03040 -20.37833 -19.02041 -16.67629 -16.09224 -15.80769 -14.99624 -14.69231 -14.08334 -13.94522 -13.52632 -13.26314 -13.13643 -12.72115 -12.49036 -12.33580 -11.99217 -11.90240 -11.55826 -11.04414 -10.98236 -10.90331 -10.69269 -10.57290 -10.40243 -10.27623 -10.09739 -9.73777 -9.37284 -8.87588 -8.74784 -8.49656 -8.39244 -7.29024 -6.04297 -4.10099 1.15511 1.37922 1.65593 3.28943 3.34194 3.36716 3.64030 4.38403 4.77036 4.87879 4.98110 5.26189 5.27040 5.31112 5.52907 5.55281 5.70590 5.76717 5.90385 5.98604 6.16739 6.21835 6.27769 6.41951 6.51798 6.70549 6.73575 6.84938 6.91878 7.23011 7.26798 7.47790 7.71847 7.76364 7.81757 8.23185 8.34206 8.61276 8.98130 9.54843 11.01492 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.003544 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.697992 B = 7898.410508 C = 8606.414466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.095 3.905 15 C -0.060 4.060 16 C -0.071 4.071 17 C -0.096 4.096 18 Br -0.064 7.064 19 C -0.097 4.097 20 C -0.118 4.118 21 C -0.063 4.063 22 C -0.124 4.124 23 H 0.047 0.953 24 H 0.012 0.988 25 H 0.051 0.949 26 H 0.009 0.991 27 H 0.086 0.914 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 5.084 -17.987 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.035 4.035 15 C -0.062 4.062 16 C -0.091 4.091 17 C -0.175 4.175 18 Br 0.021 6.979 19 C -0.117 4.117 20 C -0.137 4.137 21 C -0.064 4.064 22 C -0.180 4.180 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.028 0.972 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.236 4.096 -18.496 19.076 hybrid contribution 0.557 1.133 1.353 1.851 sum -1.679 5.229 -17.143 18.001 Atomic orbital electron populations 1.21441 0.97479 0.97174 1.01603 1.21432 0.95102 0.98164 0.99385 1.19158 0.93159 0.91633 0.85177 0.98096 1.21121 1.31829 1.12040 0.90287 0.92396 1.24867 0.95008 0.94975 0.98841 1.69871 1.36916 1.22821 1.23055 0.86645 0.79403 0.79675 0.82195 1.20201 1.21340 1.20378 1.60826 1.47856 1.16020 1.06334 1.20913 0.94346 0.99013 0.89193 1.19961 0.97029 0.93260 0.95910 1.21008 0.96022 1.00372 0.91695 1.21681 1.04444 0.95332 0.96062 1.96658 1.73726 1.77241 1.50271 1.20967 0.98879 0.92372 0.99521 1.20965 0.99159 0.99839 0.93707 1.19980 0.97299 0.93524 0.95584 1.20941 0.99422 1.00035 0.97625 0.93372 0.96856 0.93008 0.97181 0.89567 0.92875 0.85028 0.94777 0.90838 0.85020 0.85530 0.85489 0.90995 0.91345 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.47 37.16 0.35 -2.33 16 2 C -0.10 -2.43 5.58 -26.73 -0.15 -2.58 16 3 C 0.22 5.17 2.30 -68.87 -0.16 5.01 16 4 H 0.00 0.04 7.76 -51.93 -0.40 -0.37 16 5 C -0.51 -13.38 7.38 -34.44 -0.25 -13.64 16 6 H 0.06 1.50 7.61 -52.49 -0.40 1.10 16 7 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.57 11.33 55.43 0.63 -23.95 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -13.65 5.45 -109.22 -0.60 -14.25 16 14 C 0.09 1.63 4.85 -4.98 -0.02 1.60 16 15 C -0.06 -0.91 5.38 -104.63 -0.56 -1.47 16 16 C -0.07 -1.02 9.41 -39.55 -0.37 -1.40 16 17 C -0.10 -1.27 6.22 -39.52 -0.25 -1.52 16 18 Br -0.06 -0.76 33.70 -68.01 -2.29 -3.05 16 19 C -0.10 -1.16 9.79 -39.56 -0.39 -1.55 16 20 C -0.12 -1.39 9.70 -39.59 -0.38 -1.78 16 21 C -0.06 -0.85 5.85 -104.62 -0.61 -1.46 16 22 C -0.12 -1.53 9.22 36.01 0.33 -1.20 16 23 H 0.05 1.05 7.47 -51.93 -0.39 0.66 16 24 H 0.01 0.26 8.14 -51.92 -0.42 -0.17 16 25 H 0.05 1.24 7.40 -51.93 -0.38 0.86 16 26 H 0.01 0.21 7.51 -51.93 -0.39 -0.18 16 27 H 0.09 2.28 6.10 -51.93 -0.32 1.96 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.33 6.58 6.41 -39.29 -0.25 6.32 16 30 H 0.03 0.59 7.17 -51.93 -0.37 0.22 16 31 H 0.07 1.29 7.37 -51.93 -0.38 0.91 16 32 H 0.13 1.88 8.04 -52.49 -0.42 1.45 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.08 1.15 5.27 -51.93 -0.27 0.88 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -26.84 318.70 -10.27 -37.11 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.23 Total: 4.27 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -2.56 Total: -20.66 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.03 Total: -38.20 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.84 -10.27 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578024280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.343 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds