Wall clock time and date at job start Tue Mar 31 2020 10:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 H 1.09001 * 109.47192 * 179.01524 * 3 2 1 5 5 C 1.50691 * 109.47390 * 59.00660 * 3 2 1 6 6 H 1.07997 * 120.00771 * 240.00274 * 5 3 2 7 7 C 1.37886 * 119.99674 * 60.00362 * 5 3 2 8 8 N 1.31508 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99992 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47215 * 59.99503 * 9 7 5 11 11 H 1.48501 * 109.47163 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46866 * 299.99674 * 9 7 5 13 13 N 1.46903 * 109.46937 * 299.01033 * 3 2 1 14 14 C 1.46900 * 111.00113 * 274.24177 * 13 3 2 15 15 C 1.50699 * 109.47327 * 181.52093 * 14 13 3 16 16 C 1.38246 * 119.99284 * 259.99967 * 15 14 13 17 17 C 1.38303 * 119.98842 * 179.97438 * 16 15 14 18 18 Br 1.89098 * 120.00506 * 179.97438 * 17 16 15 19 19 C 1.38343 * 119.97991 * 359.97438 * 17 16 15 20 20 C 1.38191 * 119.99185 * 0.02562 * 19 17 16 21 21 C 1.38218 * 119.99823 * 79.72000 * 15 14 13 22 22 C 1.50705 * 119.98942 * 0.02562 * 21 15 14 23 23 H 1.09001 * 109.47569 * 54.42721 * 1 2 3 24 24 H 1.09009 * 109.47385 * 174.42930 * 1 2 3 25 25 H 1.08998 * 109.47182 * 294.42287 * 1 2 3 26 26 H 1.09005 * 109.46925 * 239.99972 * 2 1 3 27 27 H 1.09001 * 109.47465 * 120.00041 * 2 1 3 28 28 H 0.97005 * 120.00088 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00069 * 150.29083 * 13 3 2 30 30 H 1.09005 * 109.46901 * 301.51780 * 14 13 3 31 31 H 1.09001 * 109.47577 * 61.51224 * 14 13 3 32 32 H 1.07996 * 120.00102 * 359.94860 * 16 15 14 33 33 H 1.08008 * 120.00218 * 180.02562 * 19 17 16 34 34 H 1.08004 * 119.99654 * 180.02562 * 20 19 17 35 35 H 1.08994 * 109.46982 * 90.00221 * 22 21 15 36 36 H 1.09000 * 109.46791 * 209.99658 * 22 21 15 37 37 H 1.08999 * 109.46983 * 330.00134 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 0.0177 5 6 1.5176 2.1600 1.2179 6 1 0.8985 3.0374 1.1037 7 6 1.8303 1.6962 2.4782 8 7 2.5839 0.6274 2.6172 9 14 1.1824 2.5851 3.9879 10 1 -0.3024 2.5845 3.9635 11 1 1.6571 1.8919 5.2123 12 1 1.6768 3.9854 3.9880 13 7 1.5699 2.1280 -1.2113 14 6 2.4817 1.8903 -2.3382 15 6 1.9882 2.6378 -3.5501 16 6 1.2842 1.9698 -4.5347 17 6 0.8308 2.6560 -5.6466 18 35 -0.1316 1.7427 -6.9940 19 6 1.0815 4.0106 -5.7728 20 6 1.7853 4.6775 -4.7881 21 6 2.2343 3.9922 -3.6743 22 6 2.9969 4.7210 -2.5980 23 1 -0.3634 0.5978 -0.8359 24 1 -0.3634 -1.0229 -0.0998 25 1 -0.3633 0.4249 0.9357 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.8042 0.3013 3.5039 29 1 1.4510 3.1160 -1.0445 30 1 3.4806 2.2403 -2.0774 31 1 2.5167 0.8234 -2.5586 32 1 1.0887 0.9123 -4.4357 33 1 0.7273 4.5470 -6.6408 34 1 1.9808 5.7352 -4.8863 35 1 4.0626 4.6919 -2.8246 36 1 2.6629 5.7577 -2.5548 37 1 2.8166 4.2407 -1.6363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578024280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:47 Heat of formation + Delta-G solvation = -0.836153 kcal Electronic energy + Delta-G solvation = -18004.271766 eV Core-core repulsion = 15212.389688 eV Total energy + Delta-G solvation = -2791.882078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68862 -38.02842 -35.18112 -33.99738 -33.00350 -31.55493 -31.24341 -28.53011 -27.34091 -25.80936 -24.90161 -23.10367 -21.54803 -20.86281 -18.44843 -17.20188 -17.14242 -16.69615 -15.98509 -15.54127 -15.46216 -15.09512 -14.63460 -14.24012 -14.05535 -13.97061 -13.56779 -13.47635 -13.23422 -13.03466 -12.79388 -12.69927 -12.40853 -12.13025 -12.06081 -11.82479 -11.57703 -11.52739 -11.30482 -11.18422 -10.79605 -10.51849 -9.85202 -9.43236 -8.98416 -8.07982 -6.20058 0.13197 0.34905 0.66978 1.43753 1.45522 1.52183 2.43497 2.60756 3.21183 3.65560 3.83517 3.96807 4.00075 4.22209 4.29245 4.46066 4.61965 4.66847 4.76951 4.78089 4.81134 4.83600 4.95315 5.02346 5.18809 5.26995 5.30594 5.34679 5.40109 5.56972 5.66157 5.72477 5.81696 5.89026 5.90969 6.29223 6.49495 6.79230 7.03445 7.48672 8.96823 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.003544 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.697992 B = 7898.410508 C = 8606.414466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.223 3.777 4 H -0.032 1.032 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.102 3.898 15 C -0.079 4.079 16 C -0.082 4.082 17 C -0.106 4.106 18 Br -0.053 7.053 19 C -0.091 4.091 20 C -0.112 4.112 21 C -0.069 4.069 22 C -0.121 4.121 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.260 0.740 29 H 0.333 0.667 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 6.755 -19.290 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.115 3.885 4 H -0.014 1.014 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.305 5.305 14 C -0.027 4.027 15 C -0.080 4.080 16 C -0.103 4.103 17 C -0.185 4.185 18 Br 0.032 6.968 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.070 4.070 22 C -0.177 4.177 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.051 5.776 -19.817 20.866 hybrid contribution 0.821 0.621 1.651 1.945 sum -2.230 6.396 -18.167 19.389 Atomic orbital electron populations 1.21295 0.96153 0.98380 1.00579 1.21324 0.96161 0.97846 0.98459 1.18923 0.91058 0.92123 0.86413 1.01434 1.21382 1.31512 1.12015 0.91247 0.92545 1.25581 0.95255 0.95626 1.01495 1.70007 1.37998 1.24056 1.23439 0.85708 0.78774 0.78828 0.78906 1.19914 1.21289 1.19575 1.60723 1.48414 1.15862 1.05536 1.20793 0.93734 0.98944 0.89219 1.19754 0.98813 0.94114 0.95359 1.21000 0.96575 1.00322 0.92379 1.21824 1.04594 0.96101 0.95980 1.96665 1.73388 1.77284 1.49433 1.21332 0.97776 0.91843 1.00165 1.21297 0.97896 1.01264 0.92547 1.20153 0.97365 0.92918 0.96554 1.20927 1.00091 1.00828 0.95897 0.92868 0.94814 0.95059 0.96153 0.92365 0.93043 0.84837 0.95215 0.91679 0.85626 0.82978 0.82300 0.90004 0.89159 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.47 71.98 0.68 -4.07 16 2 C -0.10 -4.81 5.58 30.59 0.17 -4.64 16 3 C 0.22 10.96 2.30 44.16 0.10 11.07 16 4 H -0.03 -1.75 7.76 -2.39 -0.02 -1.77 16 5 C -0.52 -27.60 7.38 25.60 0.19 -27.41 16 6 H 0.06 2.94 7.61 -2.91 -0.02 2.91 16 7 C 0.02 1.07 5.30 84.66 0.45 1.51 16 8 N -0.92 -51.75 11.33 21.45 0.24 -51.51 16 9 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 N -0.67 -27.52 5.45 -499.47 -2.72 -30.24 16 14 C 0.10 3.59 4.85 85.56 0.41 4.00 16 15 C -0.08 -2.35 5.38 -19.87 -0.11 -2.46 16 16 C -0.08 -2.33 9.41 22.29 0.21 -2.12 16 17 C -0.11 -2.60 6.22 22.31 0.14 -2.46 16 18 Br -0.05 -1.16 33.70 -20.37 -0.69 -1.85 16 19 C -0.09 -1.90 9.79 22.28 0.22 -1.68 16 20 C -0.11 -2.27 9.70 22.26 0.22 -2.06 16 21 C -0.07 -1.75 5.85 -19.86 -0.12 -1.86 16 22 C -0.12 -2.82 9.22 71.24 0.66 -2.17 16 23 H 0.05 2.29 7.47 -2.39 -0.02 2.27 16 24 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.03 1.49 7.40 -2.39 -0.02 1.47 16 26 H 0.02 0.91 7.51 -2.38 -0.02 0.89 16 27 H 0.06 3.16 6.10 -2.39 -0.01 3.15 16 28 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 29 H 0.33 13.37 6.41 -89.70 -0.57 12.79 16 30 H 0.03 1.06 7.17 -2.38 -0.02 1.05 16 31 H 0.06 2.35 7.37 -2.39 -0.02 2.33 16 32 H 0.13 3.59 8.04 -2.91 -0.02 3.57 16 33 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 37 H 0.05 1.52 5.27 -2.39 -0.01 1.50 16 Total: -1.00 -57.54 318.70 2.57 -54.97 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.49 Total: 18.25 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.22 Total: -34.35 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.48 Total: -81.75 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -0.69 Total: -1.85 kcal Total: -57.54 2.57 -54.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578024280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.130 kcal (2) G-P(sol) polarization free energy of solvation -57.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds